Wall clock time and date at job start Tue Mar 31 2020 15:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00215 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99800 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.49453 * 325.00019 * 10 9 7 12 12 C 1.53043 * 109.49889 * 204.93418 * 10 9 7 13 13 C 1.53041 * 109.53788 * 178.68066 * 12 10 9 14 14 C 1.53183 * 109.31293 * 61.36577 * 13 12 10 15 15 N 1.46929 * 108.77910 * 305.36396 * 14 13 12 16 16 C 1.34769 * 120.63241 * 233.61041 * 15 14 13 17 17 O 1.21283 * 120.00097 * 179.97438 * 16 15 14 18 18 C 1.50700 * 120.00116 * 359.97438 * 16 15 14 19 19 C 1.50700 * 109.47221 * 179.97438 * 18 16 15 20 20 C 1.33356 * 125.18564 * 89.72323 * 19 18 16 21 21 C 1.38474 * 114.92698 * 179.79472 * 20 19 18 22 22 C 1.33510 * 114.88214 * 0.49151 * 21 20 19 23 23 Cl 1.73601 * 125.20492 * 179.71361 * 22 21 20 24 24 S 1.75880 * 125.19116 * 270.02368 * 19 18 16 25 25 C 1.46933 * 118.76219 * 53.58375 * 15 14 13 26 26 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 27 27 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 28 28 H 1.08997 * 109.45828 * 298.70214 * 12 10 9 29 29 H 1.09004 * 109.45670 * 58.67707 * 12 10 9 30 30 H 1.09003 * 109.49409 * 181.32068 * 13 12 10 31 31 H 1.09002 * 109.49549 * 301.38135 * 13 12 10 32 32 H 1.09003 * 109.58721 * 65.14912 * 14 13 12 33 33 H 1.09004 * 109.58828 * 185.43274 * 14 13 12 34 34 H 1.09003 * 109.47034 * 299.99749 * 18 16 15 35 35 H 1.09003 * 109.47140 * 59.99578 * 18 16 15 36 36 H 1.07994 * 122.53562 * 359.97259 * 20 19 18 37 37 H 1.07997 * 122.55906 * 180.23144 * 21 20 19 38 38 H 1.09002 * 109.61577 * 186.64475 * 25 15 14 39 39 H 1.08999 * 109.55901 * 66.21882 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 2.0579 -3.6568 0.0047 11 1 2.9665 -3.5523 -0.5884 12 6 1.1780 -4.7546 -0.5977 13 6 1.9540 -6.0733 -0.6283 14 6 2.3210 -6.4786 0.8026 15 7 3.0432 -5.3682 1.4383 16 6 4.2487 -5.5688 2.0063 17 8 4.8351 -4.6438 2.5274 18 6 4.8684 -6.9425 1.9938 19 6 6.2055 -6.8967 2.6873 20 6 6.4021 -7.0954 3.9912 21 6 7.7215 -7.0082 4.4025 22 6 8.5949 -6.7282 3.4324 23 17 10.3083 -6.5509 3.6488 24 16 7.7439 -6.5657 1.9018 25 6 2.4268 -4.0344 1.4428 26 1 -0.4849 0.8401 0.0004 27 1 0.3555 -2.3880 0.0092 28 1 0.2810 -4.8751 0.0097 29 1 0.8946 -4.4766 -1.6128 30 1 1.3351 -6.8492 -1.0789 31 1 2.8635 -5.9466 -1.2156 32 1 1.4128 -6.6937 1.3657 33 1 2.9555 -7.3647 0.7802 34 1 4.2129 -7.6414 2.5134 35 1 5.0049 -7.2701 0.9632 36 1 5.5938 -7.3110 4.6742 37 1 8.0206 -7.1514 5.4303 38 1 3.1329 -3.3063 1.8421 39 1 1.5275 -4.0501 2.0585 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000404611.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:44 Heat of formation + Delta-G solvation = 3.060824 kcal Electronic energy + Delta-G solvation = -22916.172637 eV Core-core repulsion = 19397.531998 eV Total energy + Delta-G solvation = -3518.640639 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.08486 -38.25911 -37.30647 -36.71410 -34.52297 -32.59237 -32.03500 -31.14544 -28.50043 -27.18500 -25.01617 -24.03630 -23.37183 -21.92449 -20.43688 -19.69654 -18.85751 -17.64003 -17.11711 -17.08206 -16.07214 -15.49795 -15.36820 -14.66902 -14.25826 -14.10381 -13.88777 -13.72100 -13.55711 -13.28641 -13.24309 -13.02743 -12.68708 -12.44782 -12.35136 -11.91811 -11.67418 -11.38388 -11.27027 -11.05717 -10.89207 -10.84077 -10.69385 -10.60635 -10.24290 -9.85876 -9.79708 -9.60835 -9.08577 -8.73264 -8.67544 -8.37527 -7.01414 -5.79664 -3.09583 0.59046 0.92048 1.62859 2.02864 2.40319 2.74599 3.20347 3.45903 3.49560 3.51759 4.35089 4.55056 4.59680 4.83575 4.86259 5.02957 5.06684 5.16375 5.20688 5.30470 5.46409 5.51067 5.58126 5.71258 5.75992 5.86220 5.90438 5.99752 6.12401 6.13534 6.18166 6.31529 6.46308 6.69444 6.80640 6.98165 7.60571 7.70565 8.33191 8.39002 9.50391 10.04006 10.39142 11.42502 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013929 B = 0.002921 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.685160 B = 9582.445795 C =11050.493378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.169 3.831 11 H 0.050 0.950 12 C -0.127 4.127 13 C -0.131 4.131 14 C 0.105 3.895 15 N -0.606 5.606 16 C 0.509 3.491 17 O -0.529 6.529 18 C -0.072 4.072 19 C -0.147 4.147 20 C -0.124 4.124 21 C -0.114 4.114 22 C -0.154 4.154 23 Cl -0.020 7.020 24 S 0.165 5.835 25 C 0.093 3.907 26 H 0.256 0.744 27 H 0.385 0.615 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.090 0.910 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.439 -22.187 4.379 25.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.057 3.943 11 H 0.068 0.932 12 C -0.165 4.165 13 C -0.169 4.169 14 C -0.018 4.018 15 N -0.340 5.340 16 C 0.294 3.706 17 O -0.405 6.405 18 C -0.114 4.114 19 C -0.266 4.266 20 C -0.154 4.154 21 C -0.147 4.147 22 C -0.298 4.298 23 Cl 0.008 6.992 24 S 0.428 5.572 25 C -0.032 4.032 26 H 0.066 0.934 27 H 0.219 0.781 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.132 0.868 35 H 0.123 0.877 36 H 0.164 0.836 37 H 0.165 0.835 38 H 0.109 0.891 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.472 -21.162 3.175 24.768 hybrid contribution -0.191 0.691 1.562 1.719 sum 12.281 -20.471 4.738 24.338 Atomic orbital electron populations 1.69652 1.05125 1.25903 1.57377 1.24742 0.95512 0.97754 1.02588 0.86269 0.78573 0.83359 0.78034 1.21168 1.21655 1.21091 1.19225 0.91069 0.83987 1.43196 0.91109 1.42368 1.05787 0.99582 1.88121 1.20487 0.94862 0.86463 0.92454 0.93189 1.21829 0.98699 0.94084 1.01882 1.21887 1.00960 0.98299 0.95785 1.21760 0.97019 0.88902 0.94102 1.48289 1.18493 1.11158 1.56085 1.20331 0.81250 0.90052 0.78921 1.90751 1.61274 1.43904 1.44547 1.20267 0.91776 0.97122 1.02248 1.23941 0.97532 1.07510 0.97578 1.19877 0.96716 1.04083 0.94678 1.20125 0.91866 1.02439 1.00231 1.25200 0.89973 1.15094 0.99492 1.98360 1.07730 1.96309 1.96756 1.84390 0.96666 1.69246 1.06858 1.22801 0.97787 0.81512 1.01053 0.93398 0.78069 0.92008 0.91381 0.90937 0.91578 0.91251 0.90337 0.86835 0.87720 0.83615 0.83491 0.89122 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.96 13.06 55.49 0.72 -27.24 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 22.72 29.55 -169.99 -5.02 17.69 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.24 -6.79 9.93 -15.06 -0.15 -6.94 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.72 -17.66 5.12 -53.31 -0.27 -17.93 16 10 C 0.17 3.26 2.92 -67.81 -0.20 3.07 16 11 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 12 C -0.13 -1.89 5.36 -26.69 -0.14 -2.04 16 13 C -0.13 -1.41 6.08 -26.62 -0.16 -1.57 16 14 C 0.11 1.05 6.34 -3.71 -0.02 1.02 16 15 N -0.61 -8.62 2.97 -172.77 -0.51 -9.13 16 16 C 0.51 7.45 7.69 -10.99 -0.08 7.36 16 17 O -0.53 -10.24 15.45 5.56 0.09 -10.16 16 18 C -0.07 -0.70 4.54 -29.04 -0.13 -0.83 16 19 C -0.15 -1.64 5.00 -36.01 -0.18 -1.82 16 20 C -0.12 -1.29 10.05 -41.20 -0.41 -1.71 16 21 C -0.11 -1.18 10.13 -41.15 -0.42 -1.60 16 22 C -0.15 -1.71 7.10 29.08 0.21 -1.51 16 23 Cl -0.02 -0.20 29.29 -51.86 -1.52 -1.72 16 24 S 0.17 1.87 23.33 -107.50 -2.51 -0.63 16 25 C 0.09 1.71 6.02 -3.71 -0.02 1.69 16 26 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.39 9.96 7.80 -40.82 -0.32 9.64 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.53 5.95 -51.93 -0.31 0.22 16 34 H 0.11 0.77 7.94 -51.93 -0.41 0.36 16 35 H 0.10 0.80 7.69 -51.93 -0.40 0.40 16 36 H 0.15 1.26 8.06 -52.49 -0.42 0.83 16 37 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.09 1.99 7.01 -51.93 -0.36 1.63 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 352.31 15.07 5.31 5.31 Total: -1.00 -32.86 352.31 -10.68 -43.55 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.15 Total: 5.52 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -1.82 Total: -5.24 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.06 Total: -54.31 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.51 Total: -0.63 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.52 Total: -1.72 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.86 -10.68 -43.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000404611.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.607 kcal (2) G-P(sol) polarization free energy of solvation -32.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds