Wall clock time and date at job start Tue Mar 31 2020 15:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00215 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99800 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.49453 * 325.00019 * 10 9 7 12 12 C 1.53043 * 109.49889 * 204.93418 * 10 9 7 13 13 C 1.53041 * 109.53788 * 178.68066 * 12 10 9 14 14 C 1.53183 * 109.31293 * 61.36577 * 13 12 10 15 15 N 1.46929 * 108.77910 * 305.36396 * 14 13 12 16 16 C 1.34769 * 120.63241 * 233.61041 * 15 14 13 17 17 O 1.21283 * 120.00097 * 179.97438 * 16 15 14 18 18 C 1.50700 * 120.00116 * 359.97438 * 16 15 14 19 19 C 1.50700 * 109.47221 * 179.97438 * 18 16 15 20 20 C 1.33356 * 125.18564 * 89.72323 * 19 18 16 21 21 C 1.38474 * 114.92698 * 179.79472 * 20 19 18 22 22 C 1.33510 * 114.88214 * 0.49151 * 21 20 19 23 23 Cl 1.73601 * 125.20492 * 179.71361 * 22 21 20 24 24 S 1.75880 * 125.19116 * 270.02368 * 19 18 16 25 25 C 1.46933 * 118.76219 * 53.58375 * 15 14 13 26 26 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 27 27 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 28 28 H 1.08997 * 109.45828 * 298.70214 * 12 10 9 29 29 H 1.09004 * 109.45670 * 58.67707 * 12 10 9 30 30 H 1.09003 * 109.49409 * 181.32068 * 13 12 10 31 31 H 1.09002 * 109.49549 * 301.38135 * 13 12 10 32 32 H 1.09003 * 109.58721 * 65.14912 * 14 13 12 33 33 H 1.09004 * 109.58828 * 185.43274 * 14 13 12 34 34 H 1.09003 * 109.47034 * 299.99749 * 18 16 15 35 35 H 1.09003 * 109.47140 * 59.99578 * 18 16 15 36 36 H 1.07994 * 122.53562 * 359.97259 * 20 19 18 37 37 H 1.07997 * 122.55906 * 180.23144 * 21 20 19 38 38 H 1.09002 * 109.61577 * 186.64475 * 25 15 14 39 39 H 1.08999 * 109.55901 * 66.21882 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 2.0579 -3.6568 0.0047 11 1 2.9665 -3.5523 -0.5884 12 6 1.1780 -4.7546 -0.5977 13 6 1.9540 -6.0733 -0.6283 14 6 2.3210 -6.4786 0.8026 15 7 3.0432 -5.3682 1.4383 16 6 4.2487 -5.5688 2.0063 17 8 4.8351 -4.6438 2.5274 18 6 4.8684 -6.9425 1.9938 19 6 6.2055 -6.8967 2.6873 20 6 6.4021 -7.0954 3.9912 21 6 7.7215 -7.0082 4.4025 22 6 8.5949 -6.7282 3.4324 23 17 10.3083 -6.5509 3.6488 24 16 7.7439 -6.5657 1.9018 25 6 2.4268 -4.0344 1.4428 26 1 -0.4849 0.8401 0.0004 27 1 0.3555 -2.3880 0.0092 28 1 0.2810 -4.8751 0.0097 29 1 0.8946 -4.4766 -1.6128 30 1 1.3351 -6.8492 -1.0789 31 1 2.8635 -5.9466 -1.2156 32 1 1.4128 -6.6937 1.3657 33 1 2.9555 -7.3647 0.7802 34 1 4.2129 -7.6414 2.5134 35 1 5.0049 -7.2701 0.9632 36 1 5.5938 -7.3110 4.6742 37 1 8.0206 -7.1514 5.4303 38 1 3.1329 -3.3063 1.8421 39 1 1.5275 -4.0501 2.0585 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000404611.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:43 Heat of formation + Delta-G solvation = -17.424691 kcal Electronic energy + Delta-G solvation = -22917.060956 eV Core-core repulsion = 19397.531998 eV Total energy + Delta-G solvation = -3519.528957 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.23287 -39.17174 -38.48369 -37.56429 -36.20328 -34.04141 -33.02385 -32.68361 -30.08014 -28.16466 -26.12871 -25.86575 -24.29706 -23.21815 -21.76586 -20.58379 -19.97193 -19.12755 -18.50226 -18.19071 -16.98954 -16.76599 -16.59115 -16.22877 -15.59909 -15.42814 -15.21434 -14.92437 -14.69994 -14.41984 -14.12445 -14.02601 -13.84645 -13.66386 -13.63159 -13.07827 -12.89794 -12.75622 -12.53307 -12.43050 -12.26608 -12.07123 -11.97271 -11.86880 -11.70676 -11.64376 -11.32678 -11.11320 -10.83988 -9.71168 -9.56402 -9.50474 -9.01141 -8.00097 -5.28962 -0.23412 0.11732 0.82412 1.21506 1.42888 1.45568 1.51733 1.58966 1.65714 2.12209 2.52554 3.33119 3.52297 3.66885 3.82004 4.04315 4.09159 4.17170 4.26995 4.33347 4.37501 4.41711 4.50602 4.58791 4.67907 4.80198 4.90960 4.93420 4.96367 5.06664 5.11147 5.18429 5.36760 5.40252 5.44101 5.49847 5.60565 6.23065 6.51391 7.22080 7.29506 8.02705 8.27191 9.22392 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013929 B = 0.002921 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.685160 B = 9582.445795 C =11050.493378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.067 4.067 3 Si 0.966 3.034 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.246 4.246 8 H 0.063 0.937 9 N -0.730 5.730 10 C 0.167 3.833 11 H 0.029 0.971 12 C -0.120 4.120 13 C -0.123 4.123 14 C 0.099 3.901 15 N -0.605 5.605 16 C 0.502 3.498 17 O -0.587 6.587 18 C -0.061 4.061 19 C -0.157 4.157 20 C -0.127 4.127 21 C -0.116 4.116 22 C -0.167 4.167 23 Cl -0.017 7.017 24 S 0.136 5.864 25 C 0.109 3.891 26 H 0.253 0.747 27 H 0.377 0.623 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.111 0.889 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.126 0.874 34 H 0.156 0.844 35 H 0.134 0.866 36 H 0.167 0.833 37 H 0.166 0.834 38 H 0.044 0.956 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.489 -25.149 4.444 28.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.260 4.260 3 Si 0.795 3.205 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.378 4.378 8 H 0.081 0.919 9 N -0.370 5.370 10 C 0.057 3.943 11 H 0.047 0.953 12 C -0.158 4.158 13 C -0.161 4.161 14 C -0.022 4.022 15 N -0.338 5.338 16 C 0.291 3.709 17 O -0.467 6.467 18 C -0.102 4.102 19 C -0.275 4.275 20 C -0.157 4.157 21 C -0.148 4.148 22 C -0.310 4.310 23 Cl 0.011 6.989 24 S 0.400 5.600 25 C -0.017 4.017 26 H 0.062 0.938 27 H 0.210 0.790 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.130 0.870 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.144 0.856 34 H 0.173 0.827 35 H 0.152 0.848 36 H 0.184 0.816 37 H 0.183 0.817 38 H 0.063 0.937 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.542 -24.201 3.221 27.448 hybrid contribution -0.163 1.555 1.573 2.217 sum 12.379 -22.647 4.794 26.251 Atomic orbital electron populations 1.69778 1.06278 1.26253 1.59038 1.25463 0.96381 1.00741 1.03383 0.85329 0.77415 0.79709 0.78039 1.20351 1.21455 1.21092 1.19464 0.90965 0.85570 1.41778 0.91857 1.42517 1.05515 1.00674 1.88344 1.20669 0.94555 0.86034 0.93028 0.95281 1.21753 0.98528 0.94765 1.00749 1.21892 1.00862 0.96524 0.96849 1.22182 0.98385 0.88546 0.93070 1.48323 1.18794 1.10376 1.56304 1.21266 0.80637 0.91534 0.77464 1.90731 1.62682 1.46261 1.47005 1.20369 0.91219 0.94106 1.04543 1.24181 0.97648 1.07745 0.97940 1.20205 0.97269 1.03324 0.94868 1.20435 0.91878 1.01511 1.01001 1.25340 0.90384 1.15801 0.99510 1.98356 1.07471 1.96336 1.96713 1.84424 0.97904 1.69859 1.07830 1.22143 0.96511 0.83506 0.99547 0.93792 0.79036 0.91528 0.92364 0.87043 0.91757 0.89526 0.85631 0.82656 0.84838 0.81585 0.81663 0.93734 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.12 13.06 21.65 0.28 -58.84 16 2 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 3 Si 0.97 47.70 29.55 68.60 2.03 49.73 16 4 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 5 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 7 C -0.25 -14.16 9.93 84.03 0.83 -13.32 16 8 H 0.06 3.66 7.83 -2.91 -0.02 3.63 16 9 N -0.73 -37.15 5.12 -322.57 -1.65 -38.81 16 10 C 0.17 6.58 2.92 45.07 0.13 6.71 16 11 H 0.03 1.26 8.08 -2.39 -0.02 1.24 16 12 C -0.12 -3.42 5.36 30.62 0.16 -3.25 16 13 C -0.12 -2.17 6.08 30.67 0.19 -1.98 16 14 C 0.10 1.51 6.34 86.36 0.55 2.06 16 15 N -0.60 -16.09 2.97 -818.90 -2.43 -18.53 16 16 C 0.50 13.88 7.69 87.66 0.67 14.55 16 17 O -0.59 -23.04 15.45 -3.04 -0.05 -23.09 16 18 C -0.06 -0.95 4.54 29.10 0.13 -0.82 16 19 C -0.16 -3.12 5.00 24.58 0.12 -3.00 16 20 C -0.13 -2.36 10.05 21.22 0.21 -2.14 16 21 C -0.12 -2.20 10.13 21.25 0.22 -1.99 16 22 C -0.17 -3.56 7.10 66.75 0.47 -3.09 16 23 Cl -0.02 -0.34 29.29 -2.72 -0.08 -0.42 16 24 S 0.14 2.98 23.33 -56.49 -1.32 1.67 16 25 C 0.11 4.09 6.02 86.36 0.52 4.61 16 26 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 27 H 0.38 20.13 7.80 -92.71 -0.72 19.40 16 28 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.13 0.83 5.95 -2.39 -0.01 0.81 16 34 H 0.16 1.16 7.94 -2.39 -0.02 1.14 16 35 H 0.13 1.36 7.69 -2.39 -0.02 1.34 16 36 H 0.17 2.32 8.06 -2.91 -0.02 2.29 16 37 H 0.17 2.41 8.06 -2.91 -0.02 2.38 16 38 H 0.04 2.07 7.01 -2.39 -0.02 2.05 16 39 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -76.48 352.31 1.81 -74.67 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.35 Total: 18.73 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: 4.68 Total: -5.12 kcal Atomic # 7 Polarization: -112.37 SS G_CDS: -3.80 Total: -116.17 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.05 Total: -23.09 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.73 kcal Atomic # 16 Polarization: 2.98 SS G_CDS: -1.32 Total: 1.67 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -0.08 Total: -0.42 kcal Total: -76.48 1.81 -74.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000404611.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.245 kcal (2) G-P(sol) polarization free energy of solvation -76.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds