Wall clock time and date at job start Tue Mar 31 2020 15:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 120.00096 * 2 1 4 4 H 1.48493 * 109.47394 * 240.00059 * 3 2 1 5 5 H 1.48502 * 109.46882 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46892 * 119.99561 * 3 2 1 7 7 C 1.38812 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99714 * 180.02562 * 7 2 1 9 9 N 1.36929 * 119.99989 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99896 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.63999 * 323.31092 * 10 9 7 12 12 C 1.55151 * 110.72087 * 86.45124 * 10 9 7 13 13 C 1.54912 * 101.58027 * 154.04195 * 12 10 9 14 14 N 1.47429 * 104.83294 * 322.99323 * 13 12 10 15 15 C 1.34779 * 125.64773 * 204.09206 * 14 13 12 16 16 O 1.21280 * 119.99738 * 180.02562 * 15 14 13 17 17 C 1.50701 * 119.99725 * 0.02562 * 15 14 13 18 18 C 1.53000 * 109.46763 * 180.02562 * 17 15 14 19 19 C 1.50708 * 109.47145 * 180.02562 * 18 17 15 20 20 C 1.33399 * 125.19819 * 89.99881 * 19 18 17 21 21 C 1.38480 * 114.91340 * 180.02562 * 20 19 18 22 22 Cl 1.73599 * 122.54901 * 179.97438 * 21 20 19 23 23 C 1.33439 * 114.89797 * 0.27387 * 21 20 19 24 24 S 1.75873 * 125.19426 * 270.02258 * 19 18 17 25 25 C 1.47015 * 108.70133 * 24.35376 * 14 13 12 26 26 H 0.96998 * 119.99642 * 0.02562 * 1 2 3 27 27 H 0.96999 * 120.00508 * 0.02562 * 9 7 2 28 28 H 1.09002 * 111.00762 * 35.97257 * 12 10 9 29 29 H 1.08992 * 111.00755 * 272.11728 * 12 10 9 30 30 H 1.09001 * 110.36754 * 204.15186 * 13 12 10 31 31 H 1.08998 * 110.46137 * 81.87672 * 13 12 10 32 32 H 1.08996 * 109.47145 * 60.00574 * 17 15 14 33 33 H 1.08998 * 109.47628 * 300.00274 * 17 15 14 34 34 H 1.09001 * 109.47322 * 60.00180 * 18 17 15 35 35 H 1.09002 * 109.47272 * 299.99938 * 18 17 15 36 36 H 1.08000 * 122.54157 * 359.97438 * 20 19 18 37 37 H 1.07994 * 125.20246 * 179.72481 * 23 21 20 38 38 H 1.08997 * 109.88393 * 118.13514 * 25 14 13 39 39 H 1.09004 * 109.88123 * 239.29354 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9591 -3.5808 -0.6071 12 6 2.4093 -4.0866 1.4505 13 6 2.5180 -5.6247 1.3008 14 7 1.4627 -5.9856 0.3367 15 6 0.8733 -7.1932 0.2329 16 8 0.0126 -7.3781 -0.6013 17 6 1.2836 -8.3136 1.1535 18 6 0.4677 -9.5661 0.8276 19 6 0.8776 -10.6864 1.7486 20 6 0.3252 -10.9482 2.9343 21 6 0.8689 -12.0310 3.6048 22 17 0.3010 -12.5460 5.1624 23 6 1.8666 -12.6444 2.9655 24 16 2.1577 -11.8481 1.4245 25 6 1.1643 -4.8120 -0.4968 26 1 -0.4849 0.8401 -0.0004 27 1 0.3556 -2.3880 -0.0002 28 1 1.6113 -3.8169 2.1424 29 1 3.3597 -3.6566 1.7661 30 1 2.3396 -6.1126 2.2590 31 1 3.4979 -5.9013 0.9118 32 1 1.1015 -8.0197 2.1872 33 1 2.3441 -8.5256 1.0176 34 1 0.6502 -9.8599 -0.2061 35 1 -0.5929 -9.3544 0.9633 36 1 -0.4840 -10.3597 3.3408 37 1 2.4106 -13.5004 3.3364 38 1 1.3876 -5.0322 -1.5407 39 1 0.1145 -4.5387 -0.3900 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019444146.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:53 Heat of formation + Delta-G solvation = -1.073347 kcal Electronic energy + Delta-G solvation = -22118.193156 eV Core-core repulsion = 18599.373246 eV Total energy + Delta-G solvation = -3518.819910 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.94878 -38.68036 -37.44202 -36.54948 -34.17233 -33.81767 -31.57063 -29.63532 -29.36512 -27.74148 -25.49841 -23.74877 -22.98742 -22.37083 -20.09164 -19.75441 -19.04991 -17.92893 -17.42466 -16.81786 -16.24479 -16.07383 -15.43732 -14.97936 -14.47868 -14.17214 -13.79917 -13.60865 -13.48006 -13.35754 -13.12337 -12.85627 -12.72957 -12.46958 -12.26264 -11.87131 -11.69412 -11.58315 -11.51175 -11.38309 -11.19977 -11.01621 -10.86235 -10.73771 -10.38178 -10.13813 -9.82733 -9.73995 -9.12590 -8.99452 -8.79017 -8.45693 -7.07800 -5.84712 -3.15687 0.42821 0.90317 1.31182 2.06901 2.20919 2.70878 3.10211 3.39416 3.44131 3.45292 4.22501 4.51876 4.55210 4.69841 4.77798 4.83052 4.97615 5.00399 5.22835 5.27701 5.30709 5.39808 5.51607 5.56171 5.57497 5.68197 5.72884 5.78009 5.88319 5.92604 6.10805 6.21140 6.33565 6.52641 6.56171 6.86748 7.61750 7.67650 8.24753 8.32695 9.43945 9.98062 10.32684 11.37367 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.025780 B = 0.001963 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.865993 B =14257.555593 C =14610.293140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.716 5.716 10 C 0.171 3.829 11 H 0.063 0.937 12 C -0.155 4.155 13 C 0.097 3.903 14 N -0.612 5.612 15 C 0.524 3.476 16 O -0.547 6.547 17 C -0.131 4.131 18 C -0.035 4.035 19 C -0.158 4.158 20 C -0.137 4.137 21 C -0.040 4.040 22 Cl -0.053 7.053 23 C -0.218 4.218 24 S 0.146 5.854 25 C 0.100 3.900 26 H 0.257 0.743 27 H 0.386 0.614 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.151 0.849 37 H 0.173 0.827 38 H 0.065 0.935 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.313 -26.592 7.130 28.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.357 5.357 10 C 0.060 3.940 11 H 0.081 0.919 12 C -0.196 4.196 13 C -0.026 4.026 14 N -0.346 5.346 15 C 0.313 3.687 16 O -0.425 6.425 17 C -0.171 4.171 18 C -0.075 4.075 19 C -0.275 4.275 20 C -0.167 4.167 21 C -0.080 4.080 22 Cl -0.025 7.025 23 C -0.355 4.355 24 S 0.409 5.591 25 C -0.023 4.023 26 H 0.067 0.933 27 H 0.221 0.779 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.114 0.886 36 H 0.169 0.831 37 H 0.191 0.809 38 H 0.084 0.916 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.876 -26.877 5.608 28.077 hybrid contribution -0.751 1.055 1.541 2.013 sum 5.124 -25.822 7.149 27.279 Atomic orbital electron populations 1.69657 1.05168 1.26037 1.56864 1.24786 0.95539 0.97853 1.02499 0.86236 0.78515 0.83321 0.77881 1.21164 1.21655 1.21170 1.19153 0.91013 0.83792 1.43725 0.91004 1.42348 1.05802 0.99349 1.88155 1.21176 0.94123 0.85691 0.93038 0.91885 1.23561 1.02745 0.91548 1.01729 1.22425 0.90417 0.97740 0.92014 1.48507 1.39038 1.10772 1.36262 1.20163 0.81511 0.82379 0.84663 1.90710 1.32133 1.82100 1.37558 1.21644 1.01837 0.93109 1.00547 1.19937 1.01182 0.88911 0.97445 1.24503 1.01168 1.02320 0.99554 1.19901 1.03539 0.98470 0.94756 1.19788 0.99039 0.98722 0.90446 1.98375 1.88523 1.90131 1.25484 1.25560 1.03603 1.06784 0.99538 1.84487 1.34587 1.23666 1.16376 1.22289 1.01012 0.84809 0.94157 0.93274 0.77943 0.90593 0.90507 0.91264 0.91559 0.88475 0.88789 0.89455 0.88608 0.83112 0.80943 0.91615 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.49 13.06 55.49 0.72 -26.76 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.25 -6.53 9.98 -15.06 -0.15 -6.68 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -17.19 5.25 -51.65 -0.27 -17.46 16 10 C 0.17 3.19 3.57 -66.09 -0.24 2.95 16 11 H 0.06 1.16 8.12 -51.93 -0.42 0.74 16 12 C -0.15 -2.40 6.77 -24.58 -0.17 -2.57 16 13 C 0.10 1.18 6.69 -2.53 -0.02 1.16 16 14 N -0.61 -8.92 3.33 -170.51 -0.57 -9.48 16 15 C 0.52 7.43 7.85 -10.98 -0.09 7.35 16 16 O -0.55 -9.73 16.31 5.56 0.09 -9.64 16 17 C -0.13 -1.25 4.69 -27.88 -0.13 -1.38 16 18 C -0.04 -0.32 5.00 -27.88 -0.14 -0.46 16 19 C -0.16 -1.31 5.76 -36.00 -0.21 -1.52 16 20 C -0.14 -1.15 9.94 -41.18 -0.41 -1.56 16 21 C -0.04 -0.34 6.27 -41.17 -0.26 -0.59 16 22 Cl -0.05 -0.44 29.11 -51.86 -1.51 -1.95 16 23 C -0.22 -1.59 11.08 29.05 0.32 -1.27 16 24 S 0.15 1.06 23.33 -107.50 -2.51 -1.45 16 25 C 0.10 1.74 6.63 -3.06 -0.02 1.72 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.39 10.01 7.53 -40.82 -0.31 9.71 16 28 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.07 0.69 7.48 -51.93 -0.39 0.30 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 0.82 7.85 -51.93 -0.41 0.41 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 35 H 0.10 0.94 8.10 -51.93 -0.42 0.52 16 36 H 0.15 1.16 8.06 -52.49 -0.42 0.73 16 37 H 0.17 0.93 8.06 -52.49 -0.42 0.50 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.07 1.36 7.70 -51.93 -0.40 0.96 16 LS Contribution 358.82 15.07 5.41 5.41 Total: -1.00 -30.89 358.82 -10.52 -41.41 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -5.27 Total: 6.46 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -1.60 Total: -3.26 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -0.11 Total: -53.71 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.51 Total: -1.45 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.51 Total: -1.95 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.89 -10.52 -41.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019444146.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.341 kcal (2) G-P(sol) polarization free energy of solvation -30.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds