Wall clock time and date at job start Tue Mar 31 2020 15:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 120.00096 * 2 1 4 4 H 1.48493 * 109.47394 * 240.00059 * 3 2 1 5 5 H 1.48502 * 109.46882 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46892 * 119.99561 * 3 2 1 7 7 C 1.38812 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99714 * 180.02562 * 7 2 1 9 9 N 1.36929 * 119.99989 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99896 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.63999 * 323.31092 * 10 9 7 12 12 C 1.55151 * 110.72087 * 86.45124 * 10 9 7 13 13 C 1.54912 * 101.58027 * 154.04195 * 12 10 9 14 14 N 1.47429 * 104.83294 * 322.99323 * 13 12 10 15 15 C 1.34779 * 125.64773 * 204.09206 * 14 13 12 16 16 O 1.21280 * 119.99738 * 180.02562 * 15 14 13 17 17 C 1.50701 * 119.99725 * 0.02562 * 15 14 13 18 18 C 1.53000 * 109.46763 * 180.02562 * 17 15 14 19 19 C 1.50708 * 109.47145 * 180.02562 * 18 17 15 20 20 C 1.33399 * 125.19819 * 89.99881 * 19 18 17 21 21 C 1.38480 * 114.91340 * 180.02562 * 20 19 18 22 22 Cl 1.73599 * 122.54901 * 179.97438 * 21 20 19 23 23 C 1.33439 * 114.89797 * 0.27387 * 21 20 19 24 24 S 1.75873 * 125.19426 * 270.02258 * 19 18 17 25 25 C 1.47015 * 108.70133 * 24.35376 * 14 13 12 26 26 H 0.96998 * 119.99642 * 0.02562 * 1 2 3 27 27 H 0.96999 * 120.00508 * 0.02562 * 9 7 2 28 28 H 1.09002 * 111.00762 * 35.97257 * 12 10 9 29 29 H 1.08992 * 111.00755 * 272.11728 * 12 10 9 30 30 H 1.09001 * 110.36754 * 204.15186 * 13 12 10 31 31 H 1.08998 * 110.46137 * 81.87672 * 13 12 10 32 32 H 1.08996 * 109.47145 * 60.00574 * 17 15 14 33 33 H 1.08998 * 109.47628 * 300.00274 * 17 15 14 34 34 H 1.09001 * 109.47322 * 60.00180 * 18 17 15 35 35 H 1.09002 * 109.47272 * 299.99938 * 18 17 15 36 36 H 1.08000 * 122.54157 * 359.97438 * 20 19 18 37 37 H 1.07994 * 125.20246 * 179.72481 * 23 21 20 38 38 H 1.08997 * 109.88393 * 118.13514 * 25 14 13 39 39 H 1.09004 * 109.88123 * 239.29354 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9591 -3.5808 -0.6071 12 6 2.4093 -4.0866 1.4505 13 6 2.5180 -5.6247 1.3008 14 7 1.4627 -5.9856 0.3367 15 6 0.8733 -7.1932 0.2329 16 8 0.0126 -7.3781 -0.6013 17 6 1.2836 -8.3136 1.1535 18 6 0.4677 -9.5661 0.8276 19 6 0.8776 -10.6864 1.7486 20 6 0.3252 -10.9482 2.9343 21 6 0.8689 -12.0310 3.6048 22 17 0.3010 -12.5460 5.1624 23 6 1.8666 -12.6444 2.9655 24 16 2.1577 -11.8481 1.4245 25 6 1.1643 -4.8120 -0.4968 26 1 -0.4849 0.8401 -0.0004 27 1 0.3556 -2.3880 -0.0002 28 1 1.6113 -3.8169 2.1424 29 1 3.3597 -3.6566 1.7661 30 1 2.3396 -6.1126 2.2590 31 1 3.4979 -5.9013 0.9118 32 1 1.1015 -8.0197 2.1872 33 1 2.3441 -8.5256 1.0176 34 1 0.6502 -9.8599 -0.2061 35 1 -0.5929 -9.3544 0.9633 36 1 -0.4840 -10.3597 3.3408 37 1 2.4106 -13.5004 3.3364 38 1 1.3876 -5.0322 -1.5407 39 1 0.1145 -4.5387 -0.3900 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019444146.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:53 Heat of formation + Delta-G solvation = -18.983268 kcal Electronic energy + Delta-G solvation = -22118.969789 eV Core-core repulsion = 18599.373246 eV Total energy + Delta-G solvation = -3519.596542 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.11454 -39.34007 -38.70930 -37.18392 -35.91223 -34.61541 -33.28743 -31.05332 -30.27120 -29.03292 -26.46972 -25.35438 -24.14811 -23.23236 -21.55951 -20.36389 -20.15311 -19.32664 -18.66319 -17.79102 -17.41029 -16.80181 -16.55247 -16.53013 -15.79902 -15.36440 -14.97028 -14.83763 -14.61460 -14.26576 -14.08301 -13.97536 -13.63382 -13.42776 -13.27200 -13.15793 -13.02728 -12.93565 -12.64052 -12.36030 -12.22346 -12.17787 -12.12169 -12.03007 -11.75160 -11.67533 -11.63014 -10.95850 -10.92207 -9.73366 -9.67612 -9.35687 -9.04286 -7.94479 -5.24924 -0.16049 0.33878 0.72082 1.45229 1.49599 1.52521 1.58428 1.60562 1.62814 1.98152 2.57660 3.34487 3.42155 3.76477 3.78497 3.88875 3.99320 4.05405 4.10104 4.22973 4.29978 4.41001 4.42419 4.54139 4.57075 4.65099 4.74474 4.88014 4.95894 5.02695 5.04901 5.09409 5.19744 5.23893 5.28190 5.45881 5.54297 6.25888 6.55598 7.12143 7.32159 8.04507 8.27812 9.28878 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.025780 B = 0.001963 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.865993 B =14257.555593 C =14610.293140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.976 3.024 4 H -0.277 1.277 5 H -0.300 1.300 6 H -0.274 1.274 7 C -0.239 4.239 8 H 0.084 0.916 9 N -0.733 5.733 10 C 0.164 3.836 11 H 0.069 0.931 12 C -0.146 4.146 13 C 0.105 3.895 14 N -0.614 5.614 15 C 0.520 3.480 16 O -0.590 6.590 17 C -0.119 4.119 18 C -0.030 4.030 19 C -0.168 4.168 20 C -0.140 4.140 21 C -0.057 4.057 22 Cl -0.057 7.057 23 C -0.213 4.213 24 S 0.169 5.831 25 C 0.109 3.891 26 H 0.250 0.750 27 H 0.371 0.629 28 H 0.054 0.946 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.153 0.847 37 H 0.191 0.809 38 H 0.061 0.939 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.914 -28.302 8.221 30.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.805 3.195 4 H -0.203 1.203 5 H -0.227 1.227 6 H -0.200 1.200 7 C -0.370 4.370 8 H 0.102 0.898 9 N -0.372 5.372 10 C 0.054 3.946 11 H 0.087 0.913 12 C -0.187 4.187 13 C -0.016 4.016 14 N -0.348 5.348 15 C 0.311 3.689 16 O -0.471 6.471 17 C -0.158 4.158 18 C -0.070 4.070 19 C -0.285 4.285 20 C -0.170 4.170 21 C -0.097 4.097 22 Cl -0.029 7.029 23 C -0.350 4.350 24 S 0.433 5.567 25 C -0.015 4.015 26 H 0.059 0.941 27 H 0.203 0.797 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.171 0.829 37 H 0.209 0.791 38 H 0.080 0.920 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.547 -28.638 6.720 30.633 hybrid contribution -1.536 1.459 1.172 2.421 sum 7.010 -27.179 7.892 29.157 Atomic orbital electron populations 1.69832 1.06812 1.26161 1.59428 1.25624 0.96335 1.01339 1.03713 0.85180 0.77095 0.78950 0.78323 1.20337 1.22701 1.20006 1.19592 0.91661 0.84671 1.41100 0.89797 1.42547 1.05340 1.00794 1.88532 1.21393 0.93812 0.83962 0.95384 0.91303 1.23361 1.02467 0.94468 0.98406 1.22569 0.90937 0.94963 0.93169 1.48609 1.39751 1.10133 1.36264 1.21039 0.80475 0.82843 0.84550 1.90693 1.34047 1.82812 1.39595 1.21662 1.03167 0.91037 0.99980 1.19803 1.00582 0.89244 0.97340 1.24356 1.02132 1.02646 0.99391 1.19995 1.03573 0.98599 0.94866 1.19864 0.99843 0.99279 0.90682 1.98372 1.88643 1.90158 1.25721 1.25862 1.02975 1.06831 0.99289 1.84430 1.33507 1.22852 1.15923 1.21955 0.99057 0.85890 0.94628 0.94095 0.79704 0.92666 0.89268 0.87939 0.88563 0.86568 0.86188 0.90145 0.89792 0.82931 0.79150 0.92030 0.93954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.16 13.06 21.65 0.28 -58.88 16 2 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 3 Si 0.98 44.98 29.55 68.60 2.03 47.01 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.24 -12.68 9.98 84.03 0.84 -11.84 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.73 -35.79 5.25 -317.31 -1.67 -37.46 16 10 C 0.16 6.01 3.57 46.18 0.17 6.18 16 11 H 0.07 2.45 8.12 -2.39 -0.02 2.43 16 12 C -0.15 -4.26 6.77 31.99 0.22 -4.05 16 13 C 0.11 2.16 6.69 86.86 0.58 2.74 16 14 N -0.61 -16.88 3.33 -811.77 -2.70 -19.58 16 15 C 0.52 14.01 7.85 87.66 0.69 14.70 16 16 O -0.59 -21.13 16.31 -3.03 -0.05 -21.18 16 17 C -0.12 -1.93 4.69 29.85 0.14 -1.79 16 18 C -0.03 -0.51 5.00 29.85 0.15 -0.36 16 19 C -0.17 -2.44 5.76 24.59 0.14 -2.29 16 20 C -0.14 -2.11 9.94 21.23 0.21 -1.90 16 21 C -0.06 -0.84 6.27 21.24 0.13 -0.71 16 22 Cl -0.06 -0.86 29.11 -2.72 -0.08 -0.94 16 23 C -0.21 -2.56 11.08 66.73 0.74 -1.82 16 24 S 0.17 2.01 23.33 -56.49 -1.32 0.69 16 25 C 0.11 3.80 6.63 86.73 0.58 4.37 16 26 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 27 H 0.37 20.07 7.53 -92.71 -0.70 19.37 16 28 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.10 1.52 7.48 -2.39 -0.02 1.50 16 31 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.12 1.52 7.85 -2.39 -0.02 1.50 16 33 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 1.46 8.10 -2.39 -0.02 1.44 16 35 H 0.08 1.61 8.10 -2.39 -0.02 1.59 16 36 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 37 H 0.19 1.49 8.06 -2.91 -0.02 1.47 16 38 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.04 1.71 7.70 -2.38 -0.02 1.69 16 Total: -1.00 -68.73 358.82 1.91 -66.82 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 0.37 Total: 24.21 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 5.05 Total: -0.68 kcal Atomic # 7 Polarization: -111.83 SS G_CDS: -4.08 Total: -115.92 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.05 Total: -21.18 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -1.32 Total: 0.69 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -68.73 1.91 -66.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019444146.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.832 kcal (2) G-P(sol) polarization free energy of solvation -68.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds