Wall clock time and date at job start Tue Mar 31 2020 15:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00060 * 2 1 4 4 H 1.48505 * 109.47342 * 269.99794 * 3 2 1 5 5 H 1.48498 * 109.47323 * 29.99851 * 3 2 1 6 6 H 1.48508 * 109.47185 * 150.00178 * 3 2 1 7 7 C 1.38809 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00463 * 190.07015 * 7 2 1 9 9 N 1.36936 * 120.00198 * 10.34287 * 7 2 1 10 10 C 1.46932 * 120.62809 * 32.50558 * 9 7 2 11 11 C 1.53182 * 108.77558 * 126.37184 * 10 9 7 12 12 C 1.53047 * 109.31677 * 54.63575 * 11 10 9 13 13 C 1.53035 * 109.53325 * 298.63574 * 12 11 10 14 14 C 1.46922 * 120.63558 * 212.22842 * 9 7 2 15 15 H 1.09008 * 109.58980 * 113.84000 * 14 9 7 16 16 C 1.53002 * 109.58631 * 353.41870 * 14 9 7 17 17 N 1.46494 * 109.47337 * 60.10450 * 16 14 9 18 18 C 1.34775 * 120.00336 * 180.02562 * 17 16 14 19 19 O 1.21721 * 119.99535 * 0.02562 * 18 17 16 20 20 C 1.46444 * 120.00125 * 179.97438 * 18 17 16 21 21 S 1.75819 * 125.46253 * 359.69630 * 20 18 17 22 22 C 1.70616 * 91.58700 * 179.91135 * 21 20 18 23 23 C 1.33773 * 110.99232 * 0.35376 * 22 21 20 24 24 C 1.36797 * 125.45857 * 180.02562 * 20 18 17 25 25 Cl 1.73599 * 123.37967 * 359.97438 * 24 20 18 26 26 H 0.97001 * 119.99734 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.58854 * 246.16048 * 10 9 7 28 28 H 1.09002 * 109.58818 * 6.43931 * 10 9 7 29 29 H 1.09002 * 109.50181 * 174.58451 * 11 10 9 30 30 H 1.09007 * 109.49953 * 294.68535 * 11 10 9 31 31 H 1.09003 * 109.45672 * 58.65272 * 12 11 10 32 32 H 1.08993 * 109.46460 * 178.62694 * 12 11 10 33 33 H 1.09007 * 109.49678 * 181.30950 * 13 12 11 34 34 H 1.08999 * 109.50214 * 301.37420 * 13 12 11 35 35 H 1.09000 * 109.47501 * 180.10584 * 16 14 9 36 36 H 1.09001 * 109.46862 * 300.10453 * 16 14 9 37 37 H 0.97004 * 120.00098 * 359.97438 * 17 16 14 38 38 H 1.08000 * 124.50215 * 180.02562 * 22 21 20 39 39 H 1.07994 * 122.44504 * 179.74138 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0778 -1.2094 0.1630 9 7 1.3423 -2.3783 -0.2140 10 6 0.1669 -2.4225 -1.0945 11 6 0.3845 -3.5080 -2.1532 12 6 0.7007 -4.8353 -1.4598 13 6 1.9870 -4.6923 -0.6432 14 6 1.7909 -3.6212 0.4283 15 1 1.0383 -3.9560 1.1422 16 6 3.1157 -3.3749 1.1530 17 7 2.9288 -2.3414 2.1744 18 6 3.9674 -1.9574 2.9426 19 8 5.0610 -2.4690 2.7874 20 6 3.7807 -0.9240 3.9632 21 16 2.2725 -0.0864 4.3027 22 6 3.0064 0.8332 5.5383 23 6 4.3009 0.5204 5.6640 24 6 4.7532 -0.4510 4.8009 25 17 6.3930 -1.0202 4.7782 26 1 -0.4850 0.8401 -0.0004 27 1 -0.7209 -2.6575 -0.5074 28 1 0.0379 -1.4555 -1.5807 29 1 -0.5189 -3.6174 -2.7533 30 1 1.2177 -3.2265 -2.7971 31 1 -0.1222 -5.1039 -0.7973 32 1 0.8319 -5.6148 -2.2102 33 1 2.2242 -5.6444 -0.1683 34 1 2.8053 -4.4001 -1.3013 35 1 3.4477 -4.2984 1.6272 36 1 3.8666 -3.0447 0.4352 37 1 2.0575 -1.9330 2.2973 38 1 2.4950 1.5735 6.1357 39 1 4.9440 0.9958 6.3898 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024453839.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:18 Heat of formation + Delta-G solvation = 11.066309 kcal Electronic energy + Delta-G solvation = -24257.869158 eV Core-core repulsion = 20739.575663 eV Total energy + Delta-G solvation = -3518.293495 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.37686 -38.06929 -37.31297 -35.85034 -34.16419 -33.10590 -31.06383 -29.97406 -29.50734 -26.20862 -25.17647 -24.12923 -22.17977 -21.23839 -20.48792 -19.32059 -19.13839 -18.25375 -16.54982 -16.06197 -15.66269 -15.36934 -14.71430 -14.52718 -14.06707 -13.91312 -13.47944 -13.41161 -13.17480 -13.16862 -12.82925 -12.65777 -12.43250 -12.04426 -11.74389 -11.32147 -11.23582 -11.05864 -10.94903 -10.82487 -10.58399 -10.56614 -10.30200 -10.15317 -10.01182 -9.60141 -9.48431 -9.32389 -8.83804 -8.60910 -8.37527 -8.22981 -6.67414 -5.88003 -3.36755 0.54727 1.35317 1.84915 2.32059 2.66444 3.29228 3.37355 3.41973 3.57309 3.76125 4.39253 4.93689 5.13605 5.20843 5.28878 5.32897 5.48425 5.62215 5.66965 5.71253 5.93651 5.97574 6.01428 6.07005 6.13801 6.29780 6.35006 6.40025 6.58300 6.69412 6.72116 6.84139 6.94969 7.09931 7.37134 7.65056 7.75479 8.14733 8.38254 8.74487 9.13241 9.73335 10.32214 11.18290 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013715 B = 0.005139 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.007336 B = 5447.162609 C = 6582.044759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.014 3.986 3 Si 0.881 3.119 4 H -0.286 1.286 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.252 4.252 8 H 0.069 0.931 9 N -0.588 5.588 10 C 0.173 3.827 11 C -0.145 4.145 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.032 0.968 16 C 0.136 3.864 17 N -0.688 5.688 18 C 0.577 3.423 19 O -0.534 6.534 20 C -0.251 4.251 21 S 0.275 5.725 22 C -0.243 4.243 23 C -0.145 4.145 24 C 0.004 3.996 25 Cl -0.025 7.025 26 H 0.255 0.745 27 H 0.018 0.982 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.412 0.588 38 H 0.174 0.826 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.110 -2.226 8.256 8.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.186 4.186 3 Si 0.710 3.290 4 H -0.213 1.213 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.382 4.382 8 H 0.086 0.914 9 N -0.313 5.313 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.013 3.987 17 N -0.339 5.339 18 C 0.361 3.639 19 O -0.413 6.413 20 C -0.373 4.373 21 S 0.542 5.458 22 C -0.382 4.382 23 C -0.176 4.176 24 C -0.038 4.038 25 Cl 0.004 6.996 26 H 0.065 0.935 27 H 0.036 0.964 28 H 0.105 0.895 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.250 0.750 38 H 0.191 0.809 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.412 -2.557 7.546 8.092 hybrid contribution 1.557 1.417 0.592 2.187 sum 2.969 -1.140 8.139 8.738 Atomic orbital electron populations 1.69969 1.05024 1.25481 1.53674 1.25058 0.95193 0.97851 1.00479 0.86593 0.79719 0.84386 0.78258 1.21252 1.21299 1.20001 1.19208 0.91171 0.83591 1.44205 0.91370 1.44054 1.32932 1.03118 1.51158 1.20783 0.88043 0.96978 0.89428 1.22203 0.99828 0.96810 0.99544 1.21358 0.97362 0.97410 0.98341 1.21864 0.98120 0.98101 0.98618 1.20659 0.92909 0.88707 0.92441 0.95024 1.21334 0.98464 0.89352 0.89598 1.45889 1.12734 1.40358 1.34869 1.16735 0.85078 0.81460 0.80595 1.90819 1.24583 1.56017 1.69919 1.24768 0.98548 1.07724 1.06249 1.83793 1.07579 1.28486 1.25924 1.25264 0.99477 1.07714 1.05708 1.19660 0.95853 0.99829 1.02303 1.20246 0.87891 0.97967 0.97745 1.98372 1.15632 1.87901 1.97693 0.93526 0.96363 0.89544 0.93564 0.92871 0.92874 0.93726 0.92964 0.92066 0.92323 0.91298 0.75012 0.80852 0.83313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.45 11.12 55.49 0.62 -22.83 16 2 C 0.01 0.35 5.05 -17.43 -0.09 0.26 16 3 Si 0.88 20.67 29.57 -169.99 -5.03 15.64 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.25 -6.16 6.91 -15.06 -0.10 -6.26 16 8 H 0.07 1.74 5.92 -52.48 -0.31 1.43 16 9 N -0.59 -13.12 2.98 -165.03 -0.49 -13.61 16 10 C 0.17 3.80 5.25 -3.71 -0.02 3.78 16 11 C -0.14 -2.63 6.08 -26.61 -0.16 -2.79 16 12 C -0.11 -1.72 5.89 -26.69 -0.16 -1.87 16 13 C -0.13 -2.10 5.34 -26.84 -0.14 -2.24 16 14 C 0.16 3.03 3.00 -67.82 -0.20 2.82 16 15 H 0.03 0.62 8.14 -51.92 -0.42 0.19 16 16 C 0.14 2.56 4.42 -4.04 -0.02 2.55 16 17 N -0.69 -13.43 3.86 -61.69 -0.24 -13.67 16 18 C 0.58 11.51 7.78 -12.96 -0.10 11.41 16 19 O -0.53 -11.67 15.09 5.17 0.08 -11.60 16 20 C -0.25 -4.44 6.45 -36.80 -0.24 -4.67 16 21 S 0.28 4.13 22.15 -107.50 -2.38 1.74 16 22 C -0.24 -2.97 10.92 29.17 0.32 -2.65 16 23 C -0.14 -1.89 10.06 -41.38 -0.42 -2.31 16 24 C 0.00 0.06 6.40 -40.34 -0.26 -0.19 16 25 Cl -0.02 -0.40 27.24 -51.86 -1.41 -1.82 16 26 H 0.25 6.55 8.31 -40.82 -0.34 6.21 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.09 2.15 6.18 -51.93 -0.32 1.83 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.41 7.42 -51.93 -0.39 1.03 16 37 H 0.41 8.25 6.49 -40.82 -0.26 7.99 16 38 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 39 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 340.57 15.07 5.13 5.13 Total: -1.00 -27.66 340.57 -10.38 -38.04 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.07 Total: 5.13 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -1.59 Total: -2.16 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: -0.11 Total: -50.11 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.08 Total: -11.60 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Atomic # 16 Polarization: 4.13 SS G_CDS: -2.38 Total: 1.74 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.41 Total: -1.82 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.66 -10.38 -38.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024453839.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.107 kcal (2) G-P(sol) polarization free energy of solvation -27.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds