Wall clock time and date at job start Tue Mar 31 2020 15:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00060 * 2 1 4 4 H 1.48505 * 109.47342 * 269.99794 * 3 2 1 5 5 H 1.48498 * 109.47323 * 29.99851 * 3 2 1 6 6 H 1.48508 * 109.47185 * 150.00178 * 3 2 1 7 7 C 1.38809 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00463 * 190.07015 * 7 2 1 9 9 N 1.36936 * 120.00198 * 10.34287 * 7 2 1 10 10 C 1.46932 * 120.62809 * 32.50558 * 9 7 2 11 11 C 1.53182 * 108.77558 * 126.37184 * 10 9 7 12 12 C 1.53047 * 109.31677 * 54.63575 * 11 10 9 13 13 C 1.53035 * 109.53325 * 298.63574 * 12 11 10 14 14 C 1.46922 * 120.63558 * 212.22842 * 9 7 2 15 15 H 1.09008 * 109.58980 * 113.84000 * 14 9 7 16 16 C 1.53002 * 109.58631 * 353.41870 * 14 9 7 17 17 N 1.46494 * 109.47337 * 60.10450 * 16 14 9 18 18 C 1.34775 * 120.00336 * 180.02562 * 17 16 14 19 19 O 1.21721 * 119.99535 * 0.02562 * 18 17 16 20 20 C 1.46444 * 120.00125 * 179.97438 * 18 17 16 21 21 S 1.75819 * 125.46253 * 359.69630 * 20 18 17 22 22 C 1.70616 * 91.58700 * 179.91135 * 21 20 18 23 23 C 1.33773 * 110.99232 * 0.35376 * 22 21 20 24 24 C 1.36797 * 125.45857 * 180.02562 * 20 18 17 25 25 Cl 1.73599 * 123.37967 * 359.97438 * 24 20 18 26 26 H 0.97001 * 119.99734 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.58854 * 246.16048 * 10 9 7 28 28 H 1.09002 * 109.58818 * 6.43931 * 10 9 7 29 29 H 1.09002 * 109.50181 * 174.58451 * 11 10 9 30 30 H 1.09007 * 109.49953 * 294.68535 * 11 10 9 31 31 H 1.09003 * 109.45672 * 58.65272 * 12 11 10 32 32 H 1.08993 * 109.46460 * 178.62694 * 12 11 10 33 33 H 1.09007 * 109.49678 * 181.30950 * 13 12 11 34 34 H 1.08999 * 109.50214 * 301.37420 * 13 12 11 35 35 H 1.09000 * 109.47501 * 180.10584 * 16 14 9 36 36 H 1.09001 * 109.46862 * 300.10453 * 16 14 9 37 37 H 0.97004 * 120.00098 * 359.97438 * 17 16 14 38 38 H 1.08000 * 124.50215 * 180.02562 * 22 21 20 39 39 H 1.07994 * 122.44504 * 179.74138 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0778 -1.2094 0.1630 9 7 1.3423 -2.3783 -0.2140 10 6 0.1669 -2.4225 -1.0945 11 6 0.3845 -3.5080 -2.1532 12 6 0.7007 -4.8353 -1.4598 13 6 1.9870 -4.6923 -0.6432 14 6 1.7909 -3.6212 0.4283 15 1 1.0383 -3.9560 1.1422 16 6 3.1157 -3.3749 1.1530 17 7 2.9288 -2.3414 2.1744 18 6 3.9674 -1.9574 2.9426 19 8 5.0610 -2.4690 2.7874 20 6 3.7807 -0.9240 3.9632 21 16 2.2725 -0.0864 4.3027 22 6 3.0064 0.8332 5.5383 23 6 4.3009 0.5204 5.6640 24 6 4.7532 -0.4510 4.8009 25 17 6.3930 -1.0202 4.7782 26 1 -0.4850 0.8401 -0.0004 27 1 -0.7209 -2.6575 -0.5074 28 1 0.0379 -1.4555 -1.5807 29 1 -0.5189 -3.6174 -2.7533 30 1 1.2177 -3.2265 -2.7971 31 1 -0.1222 -5.1039 -0.7973 32 1 0.8319 -5.6148 -2.2102 33 1 2.2242 -5.6444 -0.1683 34 1 2.8053 -4.4001 -1.3013 35 1 3.4477 -4.2984 1.6272 36 1 3.8666 -3.0447 0.4352 37 1 2.0575 -1.9330 2.2973 38 1 2.4950 1.5735 6.1357 39 1 4.9440 0.9958 6.3898 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024453839.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:17 Heat of formation + Delta-G solvation = -3.723344 kcal Electronic energy + Delta-G solvation = -24258.510486 eV Core-core repulsion = 20739.575663 eV Total energy + Delta-G solvation = -3518.934822 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.86948 -39.49992 -38.67257 -37.07102 -35.70279 -34.89256 -32.58065 -31.70370 -30.77438 -27.76274 -26.76083 -25.46605 -23.80165 -22.65757 -22.00042 -20.75432 -20.45934 -19.65697 -18.23050 -17.45637 -17.30112 -16.81365 -16.20695 -15.99715 -15.73283 -15.47958 -14.85539 -14.67672 -14.57484 -14.47866 -14.40130 -14.03189 -13.83442 -13.57525 -13.38360 -12.87116 -12.79265 -12.57028 -12.51169 -12.32896 -12.20461 -12.00934 -11.80808 -11.76417 -11.51003 -11.17387 -11.07756 -10.87373 -10.50584 -10.11349 -9.74667 -9.55080 -8.51418 -7.81050 -5.29990 -0.65900 0.14282 0.75889 1.20393 1.38477 1.43290 1.44878 1.50495 2.09529 2.31614 2.49270 3.34131 3.59278 3.80446 3.98540 4.02403 4.16071 4.24136 4.28936 4.44104 4.56112 4.64836 4.67434 4.76415 4.88514 4.91887 5.01228 5.01999 5.16109 5.23962 5.30187 5.38108 5.48321 5.57005 5.66973 5.77106 5.87922 6.47644 6.59920 7.20508 7.23227 7.89879 8.43937 9.22935 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013715 B = 0.005139 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.007336 B = 5447.162609 C = 6582.044759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.019 4.019 3 Si 0.919 3.081 4 H -0.294 1.294 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.055 0.945 9 N -0.601 5.601 10 C 0.178 3.822 11 C -0.136 4.136 12 C -0.102 4.102 13 C -0.122 4.122 14 C 0.159 3.841 15 H 0.034 0.966 16 C 0.140 3.860 17 N -0.690 5.690 18 C 0.573 3.427 19 O -0.563 6.563 20 C -0.295 4.295 21 S 0.259 5.741 22 C -0.209 4.209 23 C -0.151 4.151 24 C 0.006 3.994 25 Cl -0.031 7.031 26 H 0.250 0.750 27 H 0.003 0.997 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.409 0.591 38 H 0.217 0.783 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.982 -2.505 9.368 9.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.217 4.217 3 Si 0.749 3.251 4 H -0.222 1.222 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.369 4.369 8 H 0.072 0.928 9 N -0.325 5.325 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.139 4.139 13 C -0.161 4.161 14 C 0.053 3.947 15 H 0.052 0.948 16 C 0.017 3.983 17 N -0.340 5.340 18 C 0.360 3.640 19 O -0.445 6.445 20 C -0.416 4.416 21 S 0.526 5.474 22 C -0.347 4.347 23 C -0.181 4.181 24 C -0.038 4.038 25 Cl -0.002 7.002 26 H 0.060 0.940 27 H 0.021 0.979 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.065 0.935 37 H 0.246 0.754 38 H 0.233 0.767 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.282 -2.852 8.658 9.205 hybrid contribution 1.616 1.516 0.309 2.237 sum 2.898 -1.337 8.966 9.517 Atomic orbital electron populations 1.70058 1.05621 1.25356 1.55326 1.25376 0.95557 0.99323 1.01405 0.86006 0.78694 0.82914 0.77472 1.22190 1.20697 1.20746 1.19132 0.90565 0.84569 1.42593 0.92755 1.44216 1.32793 1.03682 1.51846 1.20600 0.87469 0.96702 0.89957 1.22063 1.00356 0.96713 0.98397 1.21339 0.97095 0.96640 0.98872 1.21820 0.98231 0.98340 0.97757 1.20811 0.92651 0.87995 0.93195 0.94802 1.21322 0.97864 0.89910 0.89250 1.45917 1.12571 1.40528 1.34986 1.17078 0.84560 0.81602 0.80790 1.90781 1.25392 1.57303 1.71026 1.24630 1.00446 1.09127 1.07408 1.83862 1.06919 1.29133 1.27493 1.25741 0.98855 1.06462 1.03674 1.19950 0.96636 0.99167 1.02373 1.20676 0.87352 0.98098 0.97693 1.98367 1.16107 1.88088 1.97680 0.94009 0.97876 0.92966 0.91770 0.93793 0.92314 0.90829 0.89923 0.92895 0.90507 0.93461 0.75410 0.76656 0.80077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.91 11.12 21.65 0.24 -48.67 16 2 C -0.02 -0.99 5.05 84.86 0.43 -0.57 16 3 Si 0.92 43.01 29.57 68.60 2.03 45.04 16 4 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 7 C -0.24 -11.85 6.91 84.03 0.58 -11.27 16 8 H 0.05 2.86 5.92 -2.91 -0.02 2.84 16 9 N -0.60 -26.99 2.98 -676.02 -2.01 -29.00 16 10 C 0.18 7.89 5.25 86.36 0.45 8.34 16 11 C -0.14 -4.77 6.08 30.67 0.19 -4.58 16 12 C -0.10 -2.98 5.89 30.62 0.18 -2.80 16 13 C -0.12 -3.75 5.34 30.53 0.16 -3.59 16 14 C 0.16 5.94 3.00 44.83 0.13 6.07 16 15 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 16 C 0.14 5.29 4.42 86.38 0.38 5.67 16 17 N -0.69 -27.42 3.86 -467.31 -1.80 -29.22 16 18 C 0.57 23.28 7.78 86.38 0.67 23.95 16 19 O -0.56 -25.13 15.09 -4.42 -0.07 -25.20 16 20 C -0.29 -10.37 6.45 24.07 0.16 -10.21 16 21 S 0.26 7.50 22.15 -56.49 -1.25 6.25 16 22 C -0.21 -4.39 10.92 66.80 0.73 -3.66 16 23 C -0.15 -3.51 10.06 21.10 0.21 -3.29 16 24 C 0.01 0.18 6.40 21.78 0.14 0.31 16 25 Cl -0.03 -1.00 27.24 -2.72 -0.07 -1.07 16 26 H 0.25 13.12 8.31 -92.71 -0.77 12.35 16 27 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 28 H 0.05 2.67 6.18 -2.39 -0.01 2.65 16 29 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.05 1.98 7.42 -2.39 -0.02 1.96 16 37 H 0.41 16.72 6.49 -92.71 -0.60 16.12 16 38 H 0.22 2.66 8.06 -2.91 -0.02 2.64 16 39 H 0.18 3.01 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -61.29 340.57 1.96 -59.34 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.48 Total: 18.17 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 4.42 Total: 4.37 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -3.57 Total: -106.89 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.07 Total: -25.20 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 7.50 SS G_CDS: -1.25 Total: 6.25 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -0.07 Total: -1.07 kcal Total: -61.29 1.96 -59.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024453839.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.613 kcal (2) G-P(sol) polarization free energy of solvation -61.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds