Wall clock time and date at job start Tue Mar 31 2020 15:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86793 * 120.00174 * 2 1 4 4 H 1.48499 * 109.47270 * 90.00187 * 3 2 1 5 5 H 1.48507 * 109.47162 * 210.00246 * 3 2 1 6 6 H 1.48497 * 109.47308 * 329.99896 * 3 2 1 7 7 C 1.38814 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99916 * 193.83762 * 7 2 1 9 9 N 1.36931 * 120.00271 * 13.82524 * 7 2 1 10 10 C 1.46933 * 120.62791 * 31.18435 * 9 7 2 11 11 C 1.53195 * 108.77184 * 126.36395 * 10 9 7 12 12 C 1.53039 * 109.31275 * 54.63969 * 11 10 9 13 13 C 1.53043 * 109.53716 * 298.63185 * 12 11 10 14 14 C 1.46926 * 120.63258 * 210.90161 * 9 7 2 15 15 H 1.09006 * 109.58282 * 113.84869 * 14 9 7 16 16 C 1.52996 * 109.58804 * 353.42409 * 14 9 7 17 17 N 1.46498 * 109.47235 * 60.20972 * 16 14 9 18 18 C 1.34782 * 119.99890 * 179.97438 * 17 16 14 19 19 O 1.21634 * 119.99778 * 0.02562 * 18 17 16 20 20 C 1.47158 * 119.99400 * 180.02562 * 18 17 16 21 21 C 1.36041 * 123.47053 * 359.71423 * 20 18 17 22 22 S 1.70447 * 110.82876 * 179.85747 * 21 20 18 23 23 C 1.75497 * 92.45918 * 0.33993 * 22 21 20 24 24 C 1.32844 * 110.58277 * 359.80941 * 23 22 21 25 25 Cl 1.73596 * 123.47154 * 179.97438 * 24 23 22 26 26 H 0.97003 * 120.00106 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.58229 * 246.15277 * 10 9 7 28 28 H 1.08996 * 109.58659 * 6.43764 * 10 9 7 29 29 H 1.09001 * 109.49429 * 174.58200 * 11 10 9 30 30 H 1.08993 * 109.50275 * 294.68303 * 11 10 9 31 31 H 1.08998 * 109.46177 * 58.64894 * 12 11 10 32 32 H 1.09001 * 109.46334 * 178.62413 * 12 11 10 33 33 H 1.09006 * 109.49459 * 181.31687 * 13 12 11 34 34 H 1.08998 * 109.49528 * 301.41132 * 13 12 11 35 35 H 1.08998 * 109.46969 * 180.21518 * 16 14 9 36 36 H 1.08997 * 109.47304 * 300.21145 * 16 14 9 37 37 H 0.97001 * 119.99778 * 0.02562 * 17 16 14 38 38 H 1.08000 * 124.58587 * 359.97438 * 21 20 18 39 39 H 1.08005 * 124.71163 * 179.81741 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 1.4000 5 1 3.5477 1.4401 -0.7001 6 1 1.4477 2.6526 -0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0667 -1.2159 0.2232 9 7 1.3553 -2.3708 -0.2844 10 6 0.2096 -2.3824 -1.2043 11 6 0.4672 -3.4221 -2.2995 12 6 0.7669 -4.7759 -1.6517 13 6 2.0250 -4.6626 -0.7878 14 6 1.7887 -3.6378 0.3202 15 1 1.0146 -4.0046 0.9943 16 6 3.0877 -3.4171 1.0977 17 7 2.8617 -2.4296 2.1560 18 6 3.8725 -2.0754 2.9742 19 8 4.9724 -2.5754 2.8337 20 6 3.6452 -1.0839 4.0376 21 6 2.4470 -0.4772 4.2541 22 16 2.5448 0.6072 5.5654 23 6 4.2425 0.2506 5.8315 24 6 4.6734 -0.6502 4.9554 25 17 6.3039 -1.2445 4.9167 26 1 -0.4850 0.8401 -0.0004 27 1 -0.6957 -2.6447 -0.6569 28 1 0.0920 -1.3965 -1.6539 29 1 -0.4155 -3.5095 -2.9330 30 1 1.3196 -3.1111 -2.9033 31 1 -0.0759 -5.0747 -1.0284 32 1 0.9265 -5.5231 -2.4291 33 1 2.2511 -5.6328 -0.3454 34 1 2.8628 -4.3398 -1.4058 35 1 3.4095 -4.3589 1.5422 36 1 3.8596 -3.0529 0.4198 37 1 1.9844 -2.0313 2.2683 38 1 1.5539 -0.6596 3.6747 39 1 4.8522 0.7008 6.6009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024497619.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:55 Heat of formation + Delta-G solvation = 9.605258 kcal Electronic energy + Delta-G solvation = -24257.969177 eV Core-core repulsion = 20739.612327 eV Total energy + Delta-G solvation = -3518.356851 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.48539 -37.94792 -36.94483 -35.68013 -34.15433 -33.10894 -31.06822 -29.98127 -29.46511 -26.14593 -25.15319 -24.14772 -22.19474 -21.26363 -20.53176 -19.26544 -18.83599 -18.08682 -16.91513 -16.27210 -15.63994 -15.09719 -14.67377 -14.46068 -14.06650 -13.90380 -13.47511 -13.17101 -13.13487 -13.11017 -12.80988 -12.78192 -12.43028 -12.04203 -11.73285 -11.43266 -11.30575 -11.21232 -10.98870 -10.79195 -10.60337 -10.57072 -10.31486 -10.17535 -10.02503 -9.57104 -9.46472 -9.21392 -8.91241 -8.62655 -8.38183 -8.14049 -6.70315 -5.89340 -3.35275 0.81882 1.30579 1.76035 1.95801 2.71439 3.28431 3.37387 3.43141 3.72652 3.87132 4.39329 4.74903 5.19572 5.27924 5.33510 5.39693 5.49137 5.51847 5.61946 5.67063 5.91269 5.95141 5.97698 6.06807 6.14437 6.31534 6.34497 6.40396 6.57969 6.68468 6.70996 6.83239 6.95834 7.16260 7.34759 7.61367 7.75397 8.24344 8.36034 8.85340 9.11850 9.73196 10.31361 11.17212 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013263 B = 0.004888 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.559061 B = 5726.752750 C = 6888.071836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.009 3.991 3 Si 0.887 3.113 4 H -0.284 1.284 5 H -0.279 1.279 6 H -0.289 1.289 7 C -0.250 4.250 8 H 0.070 0.930 9 N -0.588 5.588 10 C 0.173 3.827 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.031 0.969 16 C 0.136 3.864 17 N -0.687 5.687 18 C 0.566 3.434 19 O -0.543 6.543 20 C -0.144 4.144 21 C -0.191 4.191 22 S 0.214 5.786 23 C -0.246 4.246 24 C -0.003 4.003 25 Cl -0.024 7.024 26 H 0.254 0.746 27 H 0.018 0.982 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.412 0.588 38 H 0.185 0.815 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.164 -2.302 8.728 9.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.190 4.190 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.204 1.204 6 H -0.215 1.215 7 C -0.379 4.379 8 H 0.088 0.912 9 N -0.312 5.312 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.049 0.951 16 C 0.012 3.988 17 N -0.338 5.338 18 C 0.350 3.650 19 O -0.422 6.422 20 C -0.161 4.161 21 C -0.330 4.330 22 S 0.478 5.522 23 C -0.382 4.382 24 C -0.043 4.043 25 Cl 0.004 6.996 26 H 0.064 0.936 27 H 0.036 0.964 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.251 0.749 38 H 0.202 0.798 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.930 -1.616 9.311 9.645 hybrid contribution 1.063 0.229 -0.879 1.399 sum 2.993 -1.387 8.432 9.054 Atomic orbital electron populations 1.70005 1.05074 1.25479 1.53802 1.25032 0.95148 0.97982 1.00848 0.86528 0.79540 0.84198 0.78120 1.21067 1.20424 1.21524 1.19222 0.92038 0.84002 1.42663 0.91216 1.44070 1.35648 1.01980 1.49526 1.20758 0.88433 0.97468 0.88542 1.22193 0.99962 0.96596 0.99607 1.21359 0.97543 0.97367 0.98206 1.21867 0.98238 0.98255 0.98368 1.20649 0.93197 0.88524 0.92298 0.95098 1.21301 0.98320 0.90408 0.88731 1.45854 1.13754 1.42934 1.31252 1.17363 0.84888 0.81551 0.81229 1.90779 1.23636 1.55449 1.72373 1.20085 0.92145 1.03385 1.00498 1.25796 1.02540 1.01421 1.03203 1.83014 1.03806 1.39930 1.25476 1.25339 1.00526 1.05778 1.06574 1.20655 0.88321 0.98247 0.97028 1.98375 1.16170 1.87180 1.97839 0.93620 0.96383 0.89750 0.93549 0.92832 0.92887 0.93709 0.92964 0.92066 0.92490 0.91434 0.74949 0.79812 0.80740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.52 11.23 55.49 0.62 -22.90 16 2 C 0.01 0.23 4.97 -17.43 -0.09 0.14 16 3 Si 0.89 20.77 29.58 -169.99 -5.03 15.74 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.25 -6.08 6.98 -15.06 -0.11 -6.19 16 8 H 0.07 1.78 5.85 -52.48 -0.31 1.47 16 9 N -0.59 -13.07 2.98 -165.02 -0.49 -13.56 16 10 C 0.17 3.81 5.27 -3.71 -0.02 3.79 16 11 C -0.14 -2.63 6.08 -26.61 -0.16 -2.79 16 12 C -0.11 -1.72 5.89 -26.69 -0.16 -1.88 16 13 C -0.13 -2.11 5.34 -26.83 -0.14 -2.25 16 14 C 0.16 3.03 2.99 -67.82 -0.20 2.82 16 15 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 16 C 0.14 2.56 4.42 -4.04 -0.02 2.54 16 17 N -0.69 -13.16 3.81 -61.47 -0.23 -13.39 16 18 C 0.57 11.12 7.79 -12.64 -0.10 11.02 16 19 O -0.54 -11.82 15.05 5.25 0.08 -11.74 16 20 C -0.14 -2.49 5.98 -104.61 -0.63 -3.12 16 21 C -0.19 -2.91 10.38 29.94 0.31 -2.60 16 22 S 0.21 2.55 23.02 -107.50 -2.47 0.08 16 23 C -0.25 -3.10 11.00 28.88 0.32 -2.79 16 24 C 0.00 -0.05 6.49 -38.98 -0.25 -0.31 16 25 Cl -0.02 -0.39 27.24 -51.86 -1.41 -1.80 16 26 H 0.25 6.55 8.31 -40.82 -0.34 6.21 16 27 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 2.10 6.19 -51.93 -0.32 1.78 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.39 7.42 -51.93 -0.39 1.01 16 37 H 0.41 8.03 5.89 -40.82 -0.24 7.79 16 38 H 0.18 2.80 7.01 -52.49 -0.37 2.43 16 39 H 0.18 1.69 8.06 -52.48 -0.42 1.26 16 LS Contribution 339.82 15.07 5.12 5.12 Total: -1.00 -27.74 339.82 -10.04 -37.79 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -4.98 Total: 6.25 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -1.24 Total: -1.59 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: -0.10 Total: -49.85 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.08 Total: -11.74 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.74 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -2.47 Total: 0.08 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.41 Total: -1.80 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.74 -10.04 -37.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024497619.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.394 kcal (2) G-P(sol) polarization free energy of solvation -27.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds