Wall clock time and date at job start Tue Mar 31 2020 15:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86793 * 120.00174 * 2 1 4 4 H 1.48499 * 109.47270 * 90.00187 * 3 2 1 5 5 H 1.48507 * 109.47162 * 210.00246 * 3 2 1 6 6 H 1.48497 * 109.47308 * 329.99896 * 3 2 1 7 7 C 1.38814 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99916 * 193.83762 * 7 2 1 9 9 N 1.36931 * 120.00271 * 13.82524 * 7 2 1 10 10 C 1.46933 * 120.62791 * 31.18435 * 9 7 2 11 11 C 1.53195 * 108.77184 * 126.36395 * 10 9 7 12 12 C 1.53039 * 109.31275 * 54.63969 * 11 10 9 13 13 C 1.53043 * 109.53716 * 298.63185 * 12 11 10 14 14 C 1.46926 * 120.63258 * 210.90161 * 9 7 2 15 15 H 1.09006 * 109.58282 * 113.84869 * 14 9 7 16 16 C 1.52996 * 109.58804 * 353.42409 * 14 9 7 17 17 N 1.46498 * 109.47235 * 60.20972 * 16 14 9 18 18 C 1.34782 * 119.99890 * 179.97438 * 17 16 14 19 19 O 1.21634 * 119.99778 * 0.02562 * 18 17 16 20 20 C 1.47158 * 119.99400 * 180.02562 * 18 17 16 21 21 C 1.36041 * 123.47053 * 359.71423 * 20 18 17 22 22 S 1.70447 * 110.82876 * 179.85747 * 21 20 18 23 23 C 1.75497 * 92.45918 * 0.33993 * 22 21 20 24 24 C 1.32844 * 110.58277 * 359.80941 * 23 22 21 25 25 Cl 1.73596 * 123.47154 * 179.97438 * 24 23 22 26 26 H 0.97003 * 120.00106 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.58229 * 246.15277 * 10 9 7 28 28 H 1.08996 * 109.58659 * 6.43764 * 10 9 7 29 29 H 1.09001 * 109.49429 * 174.58200 * 11 10 9 30 30 H 1.08993 * 109.50275 * 294.68303 * 11 10 9 31 31 H 1.08998 * 109.46177 * 58.64894 * 12 11 10 32 32 H 1.09001 * 109.46334 * 178.62413 * 12 11 10 33 33 H 1.09006 * 109.49459 * 181.31687 * 13 12 11 34 34 H 1.08998 * 109.49528 * 301.41132 * 13 12 11 35 35 H 1.08998 * 109.46969 * 180.21518 * 16 14 9 36 36 H 1.08997 * 109.47304 * 300.21145 * 16 14 9 37 37 H 0.97001 * 119.99778 * 0.02562 * 17 16 14 38 38 H 1.08000 * 124.58587 * 359.97438 * 21 20 18 39 39 H 1.08005 * 124.71163 * 179.81741 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 1.4000 5 1 3.5477 1.4401 -0.7001 6 1 1.4477 2.6526 -0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0667 -1.2159 0.2232 9 7 1.3553 -2.3708 -0.2844 10 6 0.2096 -2.3824 -1.2043 11 6 0.4672 -3.4221 -2.2995 12 6 0.7669 -4.7759 -1.6517 13 6 2.0250 -4.6626 -0.7878 14 6 1.7887 -3.6378 0.3202 15 1 1.0146 -4.0046 0.9943 16 6 3.0877 -3.4171 1.0977 17 7 2.8617 -2.4296 2.1560 18 6 3.8725 -2.0754 2.9742 19 8 4.9724 -2.5754 2.8337 20 6 3.6452 -1.0839 4.0376 21 6 2.4470 -0.4772 4.2541 22 16 2.5448 0.6072 5.5654 23 6 4.2425 0.2506 5.8315 24 6 4.6734 -0.6502 4.9554 25 17 6.3039 -1.2445 4.9167 26 1 -0.4850 0.8401 -0.0004 27 1 -0.6957 -2.6447 -0.6569 28 1 0.0920 -1.3965 -1.6539 29 1 -0.4155 -3.5095 -2.9330 30 1 1.3196 -3.1111 -2.9033 31 1 -0.0759 -5.0747 -1.0284 32 1 0.9265 -5.5231 -2.4291 33 1 2.2511 -5.6328 -0.3454 34 1 2.8628 -4.3398 -1.4058 35 1 3.4095 -4.3589 1.5422 36 1 3.8596 -3.0529 0.4198 37 1 1.9844 -2.0313 2.2683 38 1 1.5539 -0.6596 3.6747 39 1 4.8522 0.7008 6.6009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024497619.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:54 Heat of formation + Delta-G solvation = -5.276851 kcal Electronic energy + Delta-G solvation = -24258.614514 eV Core-core repulsion = 20739.612327 eV Total energy + Delta-G solvation = -3519.002188 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.94714 -39.45092 -38.23024 -36.87563 -35.68292 -34.89799 -32.55282 -31.71265 -30.70085 -27.73226 -26.75086 -25.51270 -23.82049 -22.64778 -21.99996 -20.78332 -20.22088 -19.33085 -18.34622 -17.85682 -17.33682 -16.55116 -16.15116 -15.94497 -15.69247 -15.45885 -14.88166 -14.65070 -14.47696 -14.38353 -14.31696 -14.03893 -13.87713 -13.57416 -13.37206 -12.83292 -12.80748 -12.58786 -12.54814 -12.46254 -12.31543 -12.05110 -11.79140 -11.75319 -11.52695 -11.13831 -11.08176 -10.72361 -10.51046 -10.07038 -9.82694 -9.34235 -8.54631 -7.82724 -5.28773 -0.33835 0.26268 0.63522 0.73214 1.38482 1.44700 1.51272 1.59880 2.28127 2.43692 2.49651 3.32331 3.57800 3.63870 3.99594 4.02907 4.22636 4.27621 4.28988 4.40209 4.44100 4.55665 4.66052 4.72859 4.79239 4.87663 4.90942 5.00779 5.15189 5.22710 5.28817 5.38748 5.47061 5.63231 5.64750 5.76661 5.85114 6.45224 6.71277 7.20788 7.33878 7.89268 8.42736 9.21430 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013263 B = 0.004888 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.559061 B = 5726.752750 C = 6888.071836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.025 4.025 3 Si 0.925 3.075 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.235 4.235 8 H 0.057 0.943 9 N -0.600 5.600 10 C 0.178 3.822 11 C -0.136 4.136 12 C -0.102 4.102 13 C -0.123 4.123 14 C 0.160 3.840 15 H 0.034 0.966 16 C 0.141 3.859 17 N -0.688 5.688 18 C 0.561 3.439 19 O -0.572 6.572 20 C -0.173 4.173 21 C -0.207 4.207 22 S 0.298 5.702 23 C -0.230 4.230 24 C -0.034 4.034 25 Cl -0.037 7.037 26 H 0.249 0.751 27 H 0.003 0.997 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.044 0.956 37 H 0.410 0.590 38 H 0.178 0.822 39 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.875 -2.605 9.829 10.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.222 4.222 3 Si 0.755 3.245 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.220 1.220 7 C -0.366 4.366 8 H 0.075 0.925 9 N -0.325 5.325 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.139 4.139 13 C -0.162 4.162 14 C 0.055 3.945 15 H 0.052 0.948 16 C 0.017 3.983 17 N -0.338 5.338 18 C 0.346 3.654 19 O -0.454 6.454 20 C -0.191 4.191 21 C -0.346 4.346 22 S 0.563 5.437 23 C -0.366 4.366 24 C -0.072 4.072 25 Cl -0.008 7.008 26 H 0.058 0.942 27 H 0.021 0.979 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.247 0.753 38 H 0.196 0.804 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 1.636 -1.930 10.419 10.722 hybrid contribution 1.110 0.355 -1.159 1.644 sum 2.746 -1.575 9.259 9.786 Atomic orbital electron populations 1.70094 1.05692 1.25318 1.55505 1.25363 0.95522 0.99496 1.01826 0.85924 0.78010 0.82440 0.78089 1.20323 1.21729 1.21965 1.19158 0.91429 0.84960 1.41009 0.92539 1.44230 1.35487 1.02599 1.50138 1.20582 0.87882 0.96960 0.89278 1.22057 1.00404 0.96691 0.98368 1.21340 0.97319 0.96464 0.98823 1.21827 0.98280 0.98673 0.97436 1.20795 0.92971 0.87638 0.93146 0.94814 1.21263 0.97619 0.90949 0.88430 1.45871 1.13619 1.43029 1.31310 1.17791 0.84358 0.81650 0.81562 1.90743 1.24548 1.56709 1.73372 1.20012 0.93677 1.04311 1.01126 1.25924 1.01716 1.02323 1.04666 1.82765 1.02239 1.36673 1.22030 1.25823 1.01462 1.03681 1.05635 1.20719 0.87882 1.00215 0.98415 1.98360 1.16912 1.87573 1.97958 0.94153 0.97874 0.93195 0.91725 0.93767 0.92305 0.90819 0.89962 0.92963 0.90829 0.93747 0.75253 0.80441 0.77454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.03 11.23 21.65 0.24 -48.79 16 2 C -0.03 -1.30 4.97 84.86 0.42 -0.88 16 3 Si 0.93 43.14 29.58 68.60 2.03 45.17 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 7 C -0.23 -11.66 6.98 84.03 0.59 -11.07 16 8 H 0.06 2.96 5.85 -2.91 -0.02 2.94 16 9 N -0.60 -26.85 2.98 -676.01 -2.01 -28.86 16 10 C 0.18 7.89 5.27 86.36 0.46 8.35 16 11 C -0.14 -4.77 6.08 30.67 0.19 -4.58 16 12 C -0.10 -2.99 5.89 30.62 0.18 -2.81 16 13 C -0.12 -3.79 5.34 30.53 0.16 -3.62 16 14 C 0.16 5.95 2.99 44.83 0.13 6.09 16 15 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 16 C 0.14 5.32 4.42 86.38 0.38 5.70 16 17 N -0.69 -26.82 3.81 -466.64 -1.78 -28.60 16 18 C 0.56 22.46 7.79 86.58 0.67 23.13 16 19 O -0.57 -25.47 15.05 -4.14 -0.06 -25.53 16 20 C -0.17 -5.97 5.98 -19.86 -0.12 -6.09 16 21 C -0.21 -6.12 10.38 67.31 0.70 -5.43 16 22 S 0.30 6.23 23.02 -56.49 -1.30 4.93 16 23 C -0.23 -5.15 11.00 66.64 0.73 -4.42 16 24 C -0.03 -1.04 6.49 22.68 0.15 -0.89 16 25 Cl -0.04 -1.16 27.24 -2.72 -0.07 -1.24 16 26 H 0.25 13.09 8.31 -92.71 -0.77 12.32 16 27 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 28 H 0.05 2.55 6.19 -2.39 -0.01 2.53 16 29 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.04 1.87 7.42 -2.39 -0.02 1.86 16 37 H 0.41 16.30 5.89 -92.71 -0.55 15.75 16 38 H 0.18 5.39 7.01 -2.91 -0.02 5.37 16 39 H 0.21 3.16 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -61.22 339.82 2.23 -58.99 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.54 Total: 20.44 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 4.64 Total: 3.48 kcal Atomic # 7 Polarization: -102.70 SS G_CDS: -3.55 Total: -106.25 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.06 Total: -25.53 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: 6.23 SS G_CDS: -1.30 Total: 4.93 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.07 Total: -1.24 kcal Total: -61.22 2.23 -58.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024497619.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.716 kcal (2) G-P(sol) polarization free energy of solvation -61.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds