Wall clock time and date at job start Tue Mar 31 2020 15:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00018 * 2 1 4 4 H 1.48497 * 109.46939 * 270.00142 * 3 2 1 5 5 H 1.48504 * 109.46726 * 30.00151 * 3 2 1 6 6 H 1.48494 * 109.46936 * 149.99899 * 3 2 1 7 7 C 1.38809 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00058 * 168.79992 * 7 2 1 9 9 N 1.36940 * 120.00124 * 348.52463 * 7 2 1 10 10 C 1.46923 * 120.62892 * 328.91133 * 9 7 2 11 11 C 1.53195 * 108.77256 * 233.58292 * 10 9 7 12 12 C 1.53033 * 109.31509 * 305.36526 * 11 10 9 13 13 C 1.53048 * 109.53956 * 61.36846 * 12 11 10 14 14 C 1.46930 * 120.63084 * 148.62719 * 9 7 2 15 15 H 1.08993 * 109.58898 * 246.20059 * 14 9 7 16 16 C 1.53007 * 109.58457 * 6.63280 * 14 9 7 17 17 N 1.46499 * 109.46613 * 300.02715 * 16 14 9 18 18 C 1.34781 * 119.99633 * 180.02562 * 17 16 14 19 19 O 1.21635 * 120.00062 * 359.97438 * 18 17 16 20 20 C 1.47157 * 120.00041 * 180.02562 * 18 17 16 21 21 C 1.36054 * 123.46396 * 0.02562 * 20 18 17 22 22 S 1.70445 * 110.82743 * 180.02562 * 21 20 18 23 23 C 1.75504 * 92.45994 * 0.02562 * 22 21 20 24 24 C 1.32843 * 110.57574 * 359.71264 * 23 22 21 25 25 Cl 1.73607 * 123.46586 * 180.24769 * 24 23 22 26 26 H 0.96998 * 120.00021 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.58897 * 353.37061 * 10 9 7 28 28 H 1.08999 * 109.58339 * 113.65697 * 10 9 7 29 29 H 1.09002 * 109.49517 * 65.31559 * 11 10 9 30 30 H 1.08998 * 109.49762 * 185.38121 * 11 10 9 31 31 H 1.09004 * 109.46428 * 181.38466 * 12 11 10 32 32 H 1.09000 * 109.46488 * 301.35695 * 12 11 10 33 33 H 1.08996 * 109.49787 * 58.58360 * 13 12 11 34 34 H 1.08995 * 109.49764 * 178.65763 * 13 12 11 35 35 H 1.08989 * 109.47461 * 60.02820 * 16 14 9 36 36 H 1.09002 * 109.46516 * 180.02562 * 16 14 9 37 37 H 0.96999 * 120.00647 * 359.97438 * 17 16 14 38 38 H 1.07995 * 124.58595 * 0.02562 * 21 20 18 39 39 H 1.07998 * 124.70704 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0748 -1.2110 -0.1822 9 7 1.3461 -2.3763 0.2349 10 6 0.1672 -2.4068 1.1113 11 6 0.3844 -3.4699 2.1928 12 6 0.7081 -4.8097 1.5279 13 6 1.9974 -4.6788 0.7137 14 6 1.7951 -3.6285 -0.3891 15 1 1.0406 -3.9762 -1.0947 16 6 3.1168 -3.3909 -1.1224 17 7 2.9247 -2.3719 -2.1573 18 6 3.9598 -1.9984 -2.9355 19 8 5.0535 -2.5069 -2.7783 20 6 3.7670 -0.9745 -3.9747 21 6 2.5765 -0.3594 -4.2102 22 16 2.7173 0.7668 -5.4819 23 6 4.4200 0.4086 -5.7115 24 6 4.8234 -0.5156 -4.8468 25 17 6.4513 -1.1147 -4.7758 26 1 -0.4850 0.8400 -0.0004 27 1 0.0344 -1.4314 1.5791 28 1 -0.7176 -2.6545 0.5250 29 1 1.2140 -3.1722 2.8341 30 1 -0.5208 -3.5697 2.7917 31 1 0.8389 -5.5734 2.2946 32 1 -0.1109 -5.0947 0.8675 33 1 2.8117 -4.3697 1.3690 34 1 2.2401 -5.6395 0.2598 35 1 3.8701 -3.0500 -0.4123 36 1 3.4478 -4.3208 -1.5849 37 1 2.0524 -1.9666 -2.2830 38 1 1.6656 -0.5578 -3.6651 39 1 5.0531 0.8783 -6.4497 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024497625.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:58 Heat of formation + Delta-G solvation = 9.856034 kcal Electronic energy + Delta-G solvation = -24267.666413 eV Core-core repulsion = 20749.320437 eV Total energy + Delta-G solvation = -3518.345976 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -39.48225 -37.91689 -36.94147 -35.68147 -34.15333 -33.10260 -31.05354 -29.95747 -29.45351 -26.15360 -25.15364 -24.14952 -22.16874 -21.26294 -20.52794 -19.26519 -18.84242 -18.08813 -16.91695 -16.27375 -15.63583 -15.09678 -14.67034 -14.46262 -14.05960 -13.89540 -13.47283 -13.17471 -13.12920 -13.10794 -12.80702 -12.78266 -12.42451 -12.01999 -11.73101 -11.43400 -11.30972 -11.20566 -10.97492 -10.79057 -10.60459 -10.57109 -10.31997 -10.17210 -10.01781 -9.56976 -9.46311 -9.21589 -8.91411 -8.62878 -8.38123 -8.14036 -6.69480 -5.88732 -3.36313 0.81576 1.30301 1.75732 1.95680 2.71213 3.27865 3.36889 3.42576 3.72280 3.87010 4.38863 4.74656 5.20770 5.27498 5.33214 5.39482 5.50454 5.51552 5.63054 5.66613 5.91321 5.95108 5.98224 6.06812 6.14264 6.31057 6.35072 6.40905 6.58490 6.69394 6.72004 6.84309 6.96173 7.16171 7.36814 7.64711 7.74934 8.24192 8.36884 8.85196 9.12256 9.73079 10.31204 11.17235 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013349 B = 0.004903 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.006185 B = 5709.929420 C = 6880.544612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.008 3.992 3 Si 0.887 3.113 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.248 4.248 8 H 0.070 0.930 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.032 0.968 16 C 0.137 3.863 17 N -0.687 5.687 18 C 0.566 3.434 19 O -0.543 6.543 20 C -0.144 4.144 21 C -0.191 4.191 22 S 0.213 5.787 23 C -0.246 4.246 24 C -0.003 4.003 25 Cl -0.024 7.024 26 H 0.254 0.746 27 H 0.087 0.913 28 H 0.018 0.982 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.412 0.588 38 H 0.184 0.816 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.437 -2.000 -8.758 9.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.191 4.191 3 Si 0.717 3.283 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.088 0.912 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.183 4.183 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.013 3.987 17 N -0.338 5.338 18 C 0.350 3.650 19 O -0.422 6.422 20 C -0.161 4.161 21 C -0.330 4.330 22 S 0.478 5.522 23 C -0.382 4.382 24 C -0.042 4.042 25 Cl 0.004 6.996 26 H 0.064 0.936 27 H 0.106 0.894 28 H 0.036 0.964 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.250 0.750 38 H 0.202 0.798 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.226 -1.292 -9.319 9.668 hybrid contribution 1.030 0.197 0.868 1.362 sum 3.257 -1.095 -8.451 9.122 Atomic orbital electron populations 1.69983 1.05053 1.25444 1.54054 1.25058 0.95203 0.97948 1.00856 0.86515 0.79499 0.84176 0.78148 1.21017 1.21524 1.20421 1.19235 0.91470 0.83685 1.43392 0.91219 1.44097 1.32829 1.02699 1.51672 1.20789 0.87900 0.97350 0.89251 1.22195 0.99802 0.96699 0.99650 1.21362 0.97375 0.97390 0.98364 1.22009 0.98014 0.98141 0.98496 1.20837 0.92975 0.88615 0.92314 0.95010 1.21289 0.98284 0.89780 0.89383 1.45857 1.13099 1.41085 1.33746 1.17363 0.84829 0.81774 0.81077 1.90780 1.24586 1.56075 1.70791 1.20085 0.91893 1.02987 1.01143 1.25795 1.02711 1.01259 1.03221 1.83015 1.03024 1.37694 1.28494 1.25339 1.00646 1.05438 1.06781 1.20651 0.88226 0.97964 0.97401 1.98376 1.16401 1.87096 1.97688 0.93603 0.89447 0.96436 0.92861 0.93577 0.93746 0.92913 0.92049 0.93051 0.91443 0.92486 0.74955 0.79837 0.80733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.55 11.08 55.49 0.61 -22.94 16 2 C 0.01 0.21 5.03 -17.43 -0.09 0.12 16 3 Si 0.89 20.74 29.57 -169.99 -5.03 15.71 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.25 -6.04 6.95 -15.06 -0.10 -6.15 16 8 H 0.07 1.78 5.87 -52.48 -0.31 1.47 16 9 N -0.59 -13.09 2.97 -164.51 -0.49 -13.58 16 10 C 0.17 3.80 5.25 -3.71 -0.02 3.78 16 11 C -0.14 -2.63 6.08 -26.61 -0.16 -2.80 16 12 C -0.11 -1.73 5.88 -26.69 -0.16 -1.89 16 13 C -0.13 -2.10 5.40 -26.38 -0.14 -2.24 16 14 C 0.16 3.02 3.03 -67.37 -0.20 2.81 16 15 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 16 C 0.14 2.56 4.44 -4.04 -0.02 2.54 16 17 N -0.69 -13.15 3.81 -61.47 -0.23 -13.39 16 18 C 0.57 11.12 7.79 -12.64 -0.10 11.02 16 19 O -0.54 -11.81 15.05 5.25 0.08 -11.73 16 20 C -0.14 -2.49 5.98 -104.61 -0.63 -3.12 16 21 C -0.19 -2.92 10.38 29.95 0.31 -2.61 16 22 S 0.21 2.56 23.02 -107.50 -2.47 0.08 16 23 C -0.25 -3.10 11.00 28.88 0.32 -2.79 16 24 C 0.00 -0.05 6.49 -38.99 -0.25 -0.30 16 25 Cl -0.02 -0.39 27.24 -51.86 -1.41 -1.80 16 26 H 0.25 6.55 8.31 -40.82 -0.34 6.21 16 27 H 0.09 2.19 6.11 -51.93 -0.32 1.87 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.39 7.43 -51.94 -0.39 1.01 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.41 8.02 5.87 -40.82 -0.24 7.79 16 38 H 0.18 2.79 7.01 -52.49 -0.37 2.42 16 39 H 0.18 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 339.71 15.07 5.12 5.12 Total: -1.00 -27.70 339.71 -10.05 -37.75 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -4.98 Total: 6.38 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -1.24 Total: -1.61 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -0.11 Total: -49.90 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.08 Total: -11.73 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -2.47 Total: 0.08 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.41 Total: -1.80 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.70 -10.05 -37.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024497625.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.606 kcal (2) G-P(sol) polarization free energy of solvation -27.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds