Wall clock time and date at job start Tue Mar 31 2020 15:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00018 * 2 1 4 4 H 1.48497 * 109.46939 * 270.00142 * 3 2 1 5 5 H 1.48504 * 109.46726 * 30.00151 * 3 2 1 6 6 H 1.48494 * 109.46936 * 149.99899 * 3 2 1 7 7 C 1.38809 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00058 * 168.79992 * 7 2 1 9 9 N 1.36940 * 120.00124 * 348.52463 * 7 2 1 10 10 C 1.46923 * 120.62892 * 328.91133 * 9 7 2 11 11 C 1.53195 * 108.77256 * 233.58292 * 10 9 7 12 12 C 1.53033 * 109.31509 * 305.36526 * 11 10 9 13 13 C 1.53048 * 109.53956 * 61.36846 * 12 11 10 14 14 C 1.46930 * 120.63084 * 148.62719 * 9 7 2 15 15 H 1.08993 * 109.58898 * 246.20059 * 14 9 7 16 16 C 1.53007 * 109.58457 * 6.63280 * 14 9 7 17 17 N 1.46499 * 109.46613 * 300.02715 * 16 14 9 18 18 C 1.34781 * 119.99633 * 180.02562 * 17 16 14 19 19 O 1.21635 * 120.00062 * 359.97438 * 18 17 16 20 20 C 1.47157 * 120.00041 * 180.02562 * 18 17 16 21 21 C 1.36054 * 123.46396 * 0.02562 * 20 18 17 22 22 S 1.70445 * 110.82743 * 180.02562 * 21 20 18 23 23 C 1.75504 * 92.45994 * 0.02562 * 22 21 20 24 24 C 1.32843 * 110.57574 * 359.71264 * 23 22 21 25 25 Cl 1.73607 * 123.46586 * 180.24769 * 24 23 22 26 26 H 0.96998 * 120.00021 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.58897 * 353.37061 * 10 9 7 28 28 H 1.08999 * 109.58339 * 113.65697 * 10 9 7 29 29 H 1.09002 * 109.49517 * 65.31559 * 11 10 9 30 30 H 1.08998 * 109.49762 * 185.38121 * 11 10 9 31 31 H 1.09004 * 109.46428 * 181.38466 * 12 11 10 32 32 H 1.09000 * 109.46488 * 301.35695 * 12 11 10 33 33 H 1.08996 * 109.49787 * 58.58360 * 13 12 11 34 34 H 1.08995 * 109.49764 * 178.65763 * 13 12 11 35 35 H 1.08989 * 109.47461 * 60.02820 * 16 14 9 36 36 H 1.09002 * 109.46516 * 180.02562 * 16 14 9 37 37 H 0.96999 * 120.00647 * 359.97438 * 17 16 14 38 38 H 1.07995 * 124.58595 * 0.02562 * 21 20 18 39 39 H 1.07998 * 124.70704 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0748 -1.2110 -0.1822 9 7 1.3461 -2.3763 0.2349 10 6 0.1672 -2.4068 1.1113 11 6 0.3844 -3.4699 2.1928 12 6 0.7081 -4.8097 1.5279 13 6 1.9974 -4.6788 0.7137 14 6 1.7951 -3.6285 -0.3891 15 1 1.0406 -3.9762 -1.0947 16 6 3.1168 -3.3909 -1.1224 17 7 2.9247 -2.3719 -2.1573 18 6 3.9598 -1.9984 -2.9355 19 8 5.0535 -2.5069 -2.7783 20 6 3.7670 -0.9745 -3.9747 21 6 2.5765 -0.3594 -4.2102 22 16 2.7173 0.7668 -5.4819 23 6 4.4200 0.4086 -5.7115 24 6 4.8234 -0.5156 -4.8468 25 17 6.4513 -1.1147 -4.7758 26 1 -0.4850 0.8400 -0.0004 27 1 0.0344 -1.4314 1.5791 28 1 -0.7176 -2.6545 0.5250 29 1 1.2140 -3.1722 2.8341 30 1 -0.5208 -3.5697 2.7917 31 1 0.8389 -5.5734 2.2946 32 1 -0.1109 -5.0947 0.8675 33 1 2.8117 -4.3697 1.3690 34 1 2.2401 -5.6395 0.2598 35 1 3.8701 -3.0500 -0.4123 36 1 3.4478 -4.3208 -1.5849 37 1 2.0524 -1.9666 -2.2830 38 1 1.6656 -0.5578 -3.6651 39 1 5.0531 0.8783 -6.4497 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024497625.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:57 Heat of formation + Delta-G solvation = -4.962164 kcal Electronic energy + Delta-G solvation = -24268.308978 eV Core-core repulsion = 20749.320437 eV Total energy + Delta-G solvation = -3518.988542 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.94275 -39.42202 -38.23002 -36.87726 -35.68250 -34.89030 -32.54169 -31.68183 -30.69490 -27.74252 -26.75041 -25.51555 -23.79465 -22.64716 -21.99816 -20.78767 -20.22559 -19.33284 -18.34836 -17.85870 -17.33522 -16.55063 -16.14736 -15.94003 -15.68714 -15.45255 -14.87898 -14.65160 -14.47345 -14.38821 -14.31453 -14.03113 -13.87739 -13.55265 -13.37442 -12.83540 -12.80095 -12.58238 -12.54085 -12.46270 -12.31795 -12.04243 -11.79903 -11.75556 -11.52507 -11.13965 -11.08350 -10.72665 -10.50550 -10.07232 -9.82599 -9.34595 -8.53631 -7.81855 -5.29671 -0.34211 0.25890 0.63096 0.73110 1.38450 1.44635 1.51162 1.59616 2.27817 2.43554 2.49480 3.32889 3.58074 3.63826 4.00424 4.02760 4.23037 4.27282 4.28352 4.39866 4.44593 4.55840 4.66093 4.72520 4.78980 4.87636 4.90953 5.00951 5.15415 5.23176 5.29364 5.38885 5.47661 5.63216 5.66646 5.76455 5.86860 6.46055 6.71221 7.21137 7.33810 7.89424 8.42706 9.21639 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013349 B = 0.004903 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.006185 B = 5709.929420 C = 6880.544612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.026 4.026 3 Si 0.926 3.074 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.292 1.292 7 C -0.234 4.234 8 H 0.057 0.943 9 N -0.601 5.601 10 C 0.178 3.822 11 C -0.136 4.136 12 C -0.102 4.102 13 C -0.122 4.122 14 C 0.160 3.840 15 H 0.035 0.965 16 C 0.142 3.858 17 N -0.688 5.688 18 C 0.561 3.439 19 O -0.572 6.572 20 C -0.173 4.173 21 C -0.208 4.208 22 S 0.297 5.703 23 C -0.230 4.230 24 C -0.034 4.034 25 Cl -0.037 7.037 26 H 0.249 0.751 27 H 0.053 0.947 28 H 0.003 0.997 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.410 0.590 38 H 0.178 0.822 39 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.187 -2.261 -9.897 10.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.223 4.223 3 Si 0.756 3.244 4 H -0.201 1.201 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.364 4.364 8 H 0.074 0.926 9 N -0.325 5.325 10 C 0.052 3.948 11 C -0.175 4.175 12 C -0.140 4.140 13 C -0.161 4.161 14 C 0.054 3.946 15 H 0.053 0.947 16 C 0.018 3.982 17 N -0.338 5.338 18 C 0.346 3.654 19 O -0.454 6.454 20 C -0.191 4.191 21 C -0.347 4.347 22 S 0.562 5.438 23 C -0.366 4.366 24 C -0.072 4.072 25 Cl -0.008 7.008 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.021 0.979 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.247 0.753 38 H 0.196 0.804 39 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 1.971 -1.563 -10.466 10.765 hybrid contribution 1.068 0.311 1.163 1.609 sum 3.039 -1.253 -9.304 9.867 Atomic orbital electron populations 1.70079 1.05683 1.25282 1.55724 1.25393 0.95578 0.99487 1.01811 0.85913 0.77926 0.82384 0.78201 1.20106 1.22006 1.21782 1.19168 0.90876 0.84648 1.41749 0.92552 1.44254 1.32668 1.03279 1.52318 1.20605 0.87364 0.96940 0.89870 1.22059 1.00329 0.96719 0.98407 1.21342 0.97101 0.96545 0.98973 1.21965 0.98113 0.98485 0.97562 1.20985 0.92732 0.87798 0.93118 0.94708 1.21250 0.97620 0.90328 0.89037 1.45873 1.12975 1.41184 1.33788 1.17788 0.84293 0.81935 0.81352 1.90744 1.25473 1.57316 1.71829 1.20014 0.93432 1.03793 1.01877 1.25925 1.01905 1.02257 1.04577 1.82768 1.01481 1.34430 1.25095 1.25821 1.01663 1.03420 1.05662 1.20717 0.87733 0.99878 0.98896 1.98361 1.17117 1.87490 1.97827 0.94146 0.92898 0.97934 0.93821 0.91783 0.90870 0.92320 0.92961 0.90049 0.93747 0.90824 0.75251 0.80443 0.77441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.08 11.08 21.65 0.24 -48.84 16 2 C -0.03 -1.34 5.03 84.86 0.43 -0.91 16 3 Si 0.93 43.04 29.57 68.60 2.03 45.07 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 7 C -0.23 -11.59 6.95 84.03 0.58 -11.01 16 8 H 0.06 2.95 5.87 -2.91 -0.02 2.94 16 9 N -0.60 -26.89 2.97 -674.40 -2.00 -28.90 16 10 C 0.18 7.88 5.25 86.36 0.45 8.33 16 11 C -0.14 -4.79 6.08 30.67 0.19 -4.60 16 12 C -0.10 -3.00 5.88 30.62 0.18 -2.82 16 13 C -0.12 -3.77 5.40 30.82 0.17 -3.60 16 14 C 0.16 5.92 3.03 45.12 0.14 6.06 16 15 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 16 C 0.14 5.32 4.44 86.38 0.38 5.71 16 17 N -0.69 -26.80 3.81 -466.62 -1.78 -28.57 16 18 C 0.56 22.44 7.79 86.58 0.67 23.12 16 19 O -0.57 -25.45 15.05 -4.14 -0.06 -25.51 16 20 C -0.17 -5.97 5.98 -19.86 -0.12 -6.09 16 21 C -0.21 -6.14 10.38 67.31 0.70 -5.44 16 22 S 0.30 6.23 23.02 -56.49 -1.30 4.93 16 23 C -0.23 -5.14 11.00 66.64 0.73 -4.41 16 24 C -0.03 -1.03 6.49 22.68 0.15 -0.89 16 25 Cl -0.04 -1.16 27.24 -2.72 -0.07 -1.23 16 26 H 0.25 13.09 8.31 -92.71 -0.77 12.32 16 27 H 0.05 2.71 6.11 -2.39 -0.01 2.70 16 28 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 31 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.04 1.87 7.43 -2.39 -0.02 1.85 16 36 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.41 16.28 5.87 -92.71 -0.54 15.73 16 38 H 0.18 5.38 7.01 -2.91 -0.02 5.36 16 39 H 0.21 3.16 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -61.12 339.71 2.24 -58.88 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.54 Total: 20.74 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 4.65 Total: 3.44 kcal Atomic # 7 Polarization: -102.77 SS G_CDS: -3.54 Total: -106.31 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.06 Total: -25.51 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: 6.23 SS G_CDS: -1.30 Total: 4.93 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.07 Total: -1.23 kcal Total: -61.12 2.24 -58.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024497625.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.914 kcal (2) G-P(sol) polarization free energy of solvation -61.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds