Wall clock time and date at job start Tue Mar 31 2020 15:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99511 * 2 1 4 4 H 1.48500 * 109.46793 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46662 * 299.99199 * 3 2 1 6 6 H 1.48503 * 109.47394 * 59.99348 * 3 2 1 7 7 C 1.38813 * 120.00286 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99790 * 193.78069 * 7 2 1 9 9 N 1.36931 * 119.99860 * 13.79009 * 7 2 1 10 10 C 1.46928 * 120.63515 * 31.18447 * 9 7 2 11 11 C 1.53191 * 108.77523 * 126.36851 * 10 9 7 12 12 C 1.53043 * 109.31131 * 54.64017 * 11 10 9 13 13 C 1.53044 * 109.53734 * 298.63365 * 12 11 10 14 14 C 1.46929 * 120.62880 * 211.16395 * 9 7 2 15 15 H 1.09007 * 109.58636 * 113.69680 * 14 9 7 16 16 C 1.52998 * 109.58734 * 353.41565 * 14 9 7 17 17 N 1.46502 * 109.46898 * 60.21786 * 16 14 9 18 18 C 1.34781 * 119.99957 * 180.02562 * 17 16 14 19 19 O 1.21656 * 119.99703 * 0.02562 * 18 17 16 20 20 C 1.47041 * 119.99956 * 179.97438 * 18 17 16 21 21 C 1.44508 * 123.49514 * 0.02562 * 20 18 17 22 22 C 1.32687 * 113.10219 * 179.97438 * 21 20 18 23 23 S 1.75496 * 110.62967 * 359.74143 * 22 21 20 24 24 C 1.36227 * 123.49240 * 179.97438 * 20 18 17 25 25 Cl 1.73596 * 124.60343 * 0.03561 * 24 20 18 26 26 H 0.96992 * 120.00750 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.58769 * 246.16129 * 10 9 7 28 28 H 1.09001 * 109.58529 * 6.44119 * 10 9 7 29 29 H 1.09004 * 109.49604 * 174.58499 * 11 10 9 30 30 H 1.08997 * 109.49893 * 294.68567 * 11 10 9 31 31 H 1.08998 * 109.45968 * 58.65267 * 12 11 10 32 32 H 1.09003 * 109.46009 * 178.62803 * 12 11 10 33 33 H 1.09001 * 109.49545 * 301.41539 * 13 12 11 34 34 H 1.08995 * 109.49329 * 181.32073 * 13 12 11 35 35 H 1.08997 * 109.47357 * 300.22296 * 16 14 9 36 36 H 1.08997 * 109.47181 * 180.21028 * 16 14 9 37 37 H 0.96998 * 120.00506 * 359.97438 * 17 16 14 38 38 H 1.08004 * 123.44938 * 359.97438 * 21 20 18 39 39 H 1.08009 * 124.68725 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2127 6 1 1.8912 2.3966 1.2124 7 6 2.0104 -1.2021 0.0005 8 1 3.0671 -1.2154 0.2234 9 7 1.3554 -2.3710 -0.2816 10 6 0.2092 -2.3839 -1.2008 11 6 0.4661 -3.4251 -2.2947 12 6 0.7662 -4.7780 -1.6453 13 6 2.0249 -4.6635 -0.7822 14 6 1.7856 -3.6364 0.3288 15 1 1.0101 -3.9988 1.0036 16 6 3.0824 -3.4143 1.1098 17 7 2.8537 -2.4230 2.1640 18 6 3.8624 -2.0661 2.9837 19 8 4.9628 -2.5668 2.8477 20 6 3.6330 -1.0708 4.0414 21 6 2.3587 -0.4289 4.2697 22 6 2.3834 0.4339 5.2775 23 16 3.9808 0.4929 6.0019 24 6 4.5997 -0.6589 4.9085 25 17 6.2376 -1.2342 4.9046 26 1 -0.4851 0.8399 -0.0004 27 1 -0.6959 -2.6455 -0.6526 28 1 0.0913 -1.3986 -1.6517 29 1 -0.4169 -3.5133 -2.9277 30 1 1.3183 -3.1147 -2.8994 31 1 -0.0762 -5.0760 -1.0212 32 1 0.9255 -5.5262 -2.4219 33 1 2.8623 -4.3415 -1.4012 34 1 2.2513 -5.6331 -0.3388 35 1 3.8567 -3.0529 0.4332 36 1 3.4018 -4.3547 1.5586 37 1 1.9767 -2.0229 2.2717 38 1 1.4764 -0.6307 3.6804 39 1 1.5364 1.0164 5.6089 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024691207.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:28 Heat of formation + Delta-G solvation = -3.913022 kcal Electronic energy + Delta-G solvation = -24283.190026 eV Core-core repulsion = 20764.246978 eV Total energy + Delta-G solvation = -3518.943047 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.95601 -39.42502 -38.10800 -37.41516 -35.68018 -34.87942 -32.36232 -31.66528 -30.58152 -27.97687 -26.88662 -25.03196 -23.78770 -22.58757 -22.18078 -20.81319 -20.28195 -19.46258 -18.40968 -17.59569 -17.28406 -16.79635 -16.16089 -15.75949 -15.53906 -15.34993 -14.93871 -14.84957 -14.61605 -14.41441 -14.35816 -14.04299 -13.97478 -13.60434 -13.36612 -12.84507 -12.79588 -12.60832 -12.55601 -12.29737 -12.15190 -12.03298 -12.01754 -11.78519 -11.51989 -11.13204 -11.07077 -10.73389 -10.50241 -9.97628 -9.78895 -9.45021 -8.53392 -7.81352 -5.27658 -0.47960 0.00005 0.67466 0.94574 1.17551 1.38351 1.45474 1.52535 2.30884 2.48190 2.53220 3.33712 3.59768 3.77182 4.00022 4.01678 4.20559 4.24712 4.28856 4.44741 4.56581 4.66421 4.68249 4.81823 4.88856 4.97224 5.01440 5.09179 5.15889 5.23513 5.29667 5.39540 5.47933 5.63782 5.65799 5.78070 5.86139 6.46667 6.71614 7.22162 7.32810 7.90381 8.43872 9.22829 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013956 B = 0.004791 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.851686 B = 5843.186599 C = 7002.383959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.024 4.024 3 Si 0.927 3.073 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.282 1.282 7 C -0.234 4.234 8 H 0.057 0.943 9 N -0.600 5.600 10 C 0.178 3.822 11 C -0.136 4.136 12 C -0.102 4.102 13 C -0.122 4.122 14 C 0.160 3.840 15 H 0.035 0.965 16 C 0.141 3.859 17 N -0.686 5.686 18 C 0.559 3.441 19 O -0.574 6.574 20 C -0.166 4.166 21 C -0.114 4.114 22 C -0.215 4.215 23 S 0.281 5.719 24 C -0.151 4.151 25 Cl 0.004 6.996 26 H 0.249 0.751 27 H 0.003 0.997 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.412 0.588 38 H 0.154 0.846 39 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.384 -2.761 9.864 10.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.221 4.221 3 Si 0.758 3.242 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.208 1.208 7 C -0.364 4.364 8 H 0.074 0.926 9 N -0.325 5.325 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.140 4.140 13 C -0.161 4.161 14 C 0.054 3.946 15 H 0.052 0.948 16 C 0.017 3.983 17 N -0.335 5.335 18 C 0.345 3.655 19 O -0.456 6.456 20 C -0.186 4.186 21 C -0.142 4.142 22 C -0.350 4.350 23 S 0.545 5.455 24 C -0.298 4.298 25 Cl 0.032 6.968 26 H 0.058 0.942 27 H 0.021 0.979 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.249 0.751 38 H 0.172 0.828 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 3.792 -2.235 10.957 11.808 hybrid contribution -0.458 0.505 -1.616 1.753 sum 3.335 -1.729 9.342 10.069 Atomic orbital electron populations 1.70096 1.05662 1.25232 1.55579 1.25356 0.95514 0.99460 1.01768 0.85822 0.78292 0.82885 0.77225 1.21415 1.22286 1.20801 1.19182 0.91392 0.84913 1.40941 0.92568 1.44244 1.35521 1.02713 1.49983 1.20581 0.87865 0.96952 0.89303 1.22058 1.00401 0.96686 0.98363 1.21342 0.97328 0.96467 0.98817 1.21890 0.98254 0.98621 0.97374 1.20888 0.92972 0.87678 0.93044 0.94764 1.21271 0.97665 0.90884 0.88530 1.45884 1.13800 1.42589 1.31267 1.17765 0.84359 0.81719 0.81623 1.90749 1.24517 1.56912 1.73429 1.20441 0.94489 1.03480 1.00182 1.21226 0.96416 0.97434 0.99098 1.25944 1.02421 1.05139 1.01472 1.82687 1.00845 1.34003 1.28005 1.25556 0.92429 1.06569 1.05209 1.98375 1.13368 1.87410 1.97612 0.94161 0.97875 0.93195 0.91735 0.93753 0.92307 0.90828 0.92937 0.90010 0.93771 0.90823 0.75052 0.82823 0.77464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.19 11.22 21.65 0.24 -48.94 16 2 C -0.02 -1.25 4.97 84.86 0.42 -0.82 16 3 Si 0.93 43.57 29.58 68.60 2.03 45.60 16 4 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.23 -11.64 6.96 84.03 0.59 -11.06 16 8 H 0.06 2.97 5.86 -2.91 -0.02 2.95 16 9 N -0.60 -26.94 2.97 -675.22 -2.01 -28.94 16 10 C 0.18 7.91 5.27 86.36 0.46 8.37 16 11 C -0.14 -4.77 6.08 30.67 0.19 -4.58 16 12 C -0.10 -2.99 5.88 30.62 0.18 -2.81 16 13 C -0.12 -3.77 5.37 30.67 0.16 -3.60 16 14 C 0.16 5.96 3.01 44.97 0.14 6.09 16 15 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 16 C 0.14 5.31 4.43 86.38 0.38 5.69 16 17 N -0.69 -26.92 3.82 -466.73 -1.78 -28.70 16 18 C 0.56 22.52 7.79 86.55 0.67 23.19 16 19 O -0.57 -25.51 14.91 -4.21 -0.06 -25.57 16 20 C -0.17 -5.77 5.98 -19.84 -0.12 -5.89 16 21 C -0.11 -3.39 9.90 22.70 0.22 -3.16 16 22 C -0.21 -4.83 11.11 66.65 0.74 -4.09 16 23 S 0.28 6.02 23.02 -56.49 -1.30 4.72 16 24 C -0.15 -4.65 6.87 67.35 0.46 -4.19 16 25 Cl 0.00 0.11 27.20 -2.72 -0.07 0.04 16 26 H 0.25 13.10 8.31 -92.71 -0.77 12.33 16 27 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 28 H 0.05 2.55 6.19 -2.39 -0.01 2.54 16 29 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 30 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.04 1.87 7.42 -2.39 -0.02 1.85 16 36 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.41 16.56 5.93 -92.71 -0.55 16.01 16 38 H 0.15 4.80 7.10 -2.91 -0.02 4.78 16 39 H 0.21 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -61.21 339.83 2.07 -59.14 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.53 Total: 19.55 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 4.50 Total: 3.13 kcal Atomic # 7 Polarization: -103.04 SS G_CDS: -3.55 Total: -106.59 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.06 Total: -25.57 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 6.02 SS G_CDS: -1.30 Total: 4.72 kcal Atomic # 17 Polarization: 0.11 SS G_CDS: -0.07 Total: 0.04 kcal Total: -61.21 2.07 -59.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024691207.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.224 kcal (2) G-P(sol) polarization free energy of solvation -61.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds