Wall clock time and date at job start Tue Mar 31 2020 15:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00155 * 2 1 4 4 H 1.48502 * 109.47079 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46988 * 300.00107 * 3 2 1 6 6 H 1.48495 * 109.47054 * 60.00256 * 3 2 1 7 7 C 1.38817 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00027 * 165.78509 * 7 2 1 9 9 N 1.36938 * 119.99881 * 345.51063 * 7 2 1 10 10 C 1.46930 * 120.63042 * 329.12927 * 9 7 2 11 11 C 1.53188 * 108.77583 * 233.58779 * 10 9 7 12 12 C 1.53043 * 109.31336 * 305.36554 * 11 10 9 13 13 C 1.53037 * 109.53888 * 61.36026 * 12 11 10 14 14 C 1.46918 * 120.63177 * 148.84690 * 9 7 2 15 15 H 1.08995 * 109.59295 * 246.20083 * 14 9 7 16 16 C 1.52999 * 109.58642 * 6.63186 * 14 9 7 17 17 N 1.46502 * 109.46948 * 299.82034 * 16 14 9 18 18 C 1.34777 * 120.00148 * 180.02562 * 17 16 14 19 19 O 1.21652 * 119.99867 * 0.02562 * 18 17 16 20 20 C 1.47041 * 120.00008 * 180.02562 * 18 17 16 21 21 C 1.44511 * 123.49214 * 359.72752 * 20 18 17 22 22 C 1.32700 * 113.09632 * 179.76356 * 21 20 18 23 23 S 1.75490 * 110.62978 * 0.48803 * 22 21 20 24 24 C 1.36228 * 123.49420 * 180.02562 * 20 18 17 25 25 Cl 1.73602 * 124.60215 * 0.02562 * 24 20 18 26 26 H 0.96998 * 120.00071 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.58679 * 353.37313 * 10 9 7 28 28 H 1.08998 * 109.58961 * 113.65652 * 10 9 7 29 29 H 1.08999 * 109.50286 * 65.31537 * 11 10 9 30 30 H 1.09001 * 109.50029 * 185.38328 * 11 10 9 31 31 H 1.08997 * 109.46249 * 181.38858 * 12 11 10 32 32 H 1.09005 * 109.45585 * 301.36103 * 12 11 10 33 33 H 1.09010 * 109.49355 * 58.59103 * 13 12 11 34 34 H 1.08996 * 109.49746 * 178.65340 * 13 12 11 35 35 H 1.09001 * 109.47345 * 59.81931 * 16 14 9 36 36 H 1.08997 * 109.47239 * 179.82533 * 16 14 9 37 37 H 0.97003 * 119.99535 * 0.02562 * 17 16 14 38 38 H 1.07996 * 123.44992 * 0.02562 * 21 20 18 39 39 H 1.08000 * 124.67844 * 180.19610 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0654 -1.2164 -0.2302 9 7 1.3582 -2.3694 0.2957 10 6 0.2175 -2.3754 1.2217 11 6 0.4815 -3.4074 2.3226 12 6 0.7787 -4.7654 1.6825 13 6 2.0321 -4.6573 0.8111 14 6 1.7821 -3.6384 -0.3112 15 1 0.9990 -4.0060 -0.9743 16 6 3.0713 -3.4215 -1.1061 17 7 2.8330 -2.4358 -2.1634 18 6 3.8335 -2.0848 -2.9955 19 8 4.9343 -2.5869 -2.8688 20 6 3.5945 -1.0951 -4.0563 21 6 2.3172 -0.4565 -4.2781 22 6 2.3343 0.4055 -5.2868 23 16 3.9258 0.4630 -6.0240 24 6 4.5525 -0.6893 -4.9356 25 17 6.1893 -1.2679 -4.9466 26 1 -0.4850 0.8400 0.0004 27 1 0.1032 -1.3871 1.6671 28 1 -0.6911 -2.6396 0.6806 29 1 1.3370 -3.0917 2.9197 30 1 -0.3975 -3.4905 2.9618 31 1 0.9427 -5.5072 2.4642 32 1 -0.0671 -5.0689 1.0656 33 1 2.8731 -4.3297 1.4225 34 1 2.2569 -5.6304 0.3747 35 1 3.8525 -3.0571 -0.4390 36 1 3.3857 -4.3646 -1.5529 37 1 1.9551 -2.0357 -2.2646 38 1 1.4398 -0.6570 -3.6811 39 1 1.4848 0.9875 -5.6122 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024691209.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:33 Heat of formation + Delta-G solvation = 10.880707 kcal Electronic energy + Delta-G solvation = -24279.873643 eV Core-core repulsion = 20761.572100 eV Total energy + Delta-G solvation = -3518.301543 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -39.48084 -37.88596 -36.80805 -36.20031 -34.14626 -33.08137 -30.79145 -29.93303 -29.40702 -26.44674 -25.20003 -23.64307 -22.16469 -21.29181 -20.64083 -19.29132 -18.86117 -18.25436 -16.84153 -16.07124 -15.60841 -15.31006 -14.50798 -14.14982 -14.03859 -13.86931 -13.79947 -13.44191 -13.14215 -13.10251 -12.86361 -12.72409 -12.41933 -12.04822 -11.71578 -11.43091 -11.20218 -11.07236 -10.97957 -10.79719 -10.77988 -10.55420 -10.29999 -10.15625 -10.01568 -9.56301 -9.45069 -9.21384 -8.74503 -8.61776 -8.48997 -8.13697 -6.68994 -5.87682 -3.33726 0.72397 1.09866 1.78142 2.16094 2.34014 3.29516 3.39641 3.45098 3.77132 3.95622 4.41270 4.90477 5.20997 5.23338 5.29538 5.43151 5.50603 5.62761 5.66605 5.84805 5.96366 6.05456 6.06692 6.14408 6.23947 6.31777 6.35295 6.41159 6.58677 6.69484 6.71856 6.84157 6.96880 7.17365 7.35672 7.62110 7.77610 8.25828 8.37593 8.85559 9.13378 9.74692 10.32875 11.18669 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013943 B = 0.004789 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.723680 B = 5845.154522 C = 7004.904859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.010 3.990 3 Si 0.886 3.114 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.249 4.249 8 H 0.071 0.929 9 N -0.588 5.588 10 C 0.173 3.827 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.033 0.967 16 C 0.136 3.864 17 N -0.684 5.684 18 C 0.565 3.435 19 O -0.545 6.545 20 C -0.137 4.137 21 C -0.090 4.090 22 C -0.227 4.227 23 S 0.195 5.805 24 C -0.128 4.128 25 Cl 0.012 6.988 26 H 0.253 0.747 27 H 0.084 0.916 28 H 0.018 0.982 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.414 0.586 38 H 0.164 0.836 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.502 -2.463 -8.775 9.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.189 4.189 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.379 4.379 8 H 0.088 0.912 9 N -0.312 5.312 10 C 0.048 3.952 11 C -0.183 4.183 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.012 3.988 17 N -0.335 5.335 18 C 0.349 3.651 19 O -0.425 6.425 20 C -0.156 4.156 21 C -0.119 4.119 22 C -0.362 4.362 23 S 0.458 5.542 24 C -0.275 4.275 25 Cl 0.041 6.959 26 H 0.063 0.937 27 H 0.102 0.898 28 H 0.037 0.963 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.253 0.747 38 H 0.181 0.819 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 3.906 -1.927 -9.872 10.790 hybrid contribution -0.549 0.386 1.373 1.528 sum 3.357 -1.541 -8.499 9.267 Atomic orbital electron populations 1.70018 1.05072 1.25362 1.53827 1.25023 0.95129 0.97973 1.00775 0.86454 0.79920 0.84565 0.77477 1.20157 1.21464 1.21561 1.19262 0.92186 0.84044 1.42395 0.91168 1.44098 1.36279 1.01997 1.48868 1.20750 0.88497 0.97532 0.88424 1.22189 0.99967 0.96562 0.99602 1.21360 0.97600 0.97350 0.98175 1.22010 0.98193 0.98233 0.98232 1.20827 0.93263 0.88534 0.92095 0.94990 1.21293 0.98355 0.90453 0.88704 1.45861 1.14222 1.42820 1.30612 1.17344 0.84875 0.81573 0.81312 1.90784 1.23456 1.55434 1.72859 1.20487 0.92946 1.02658 0.99472 1.21354 0.97260 0.95801 0.97494 1.25469 1.00897 1.06740 1.03065 1.82948 1.02873 1.37291 1.31067 1.25137 0.92884 1.05438 1.04015 1.98385 1.13096 1.86942 1.97514 0.93683 0.89815 0.96349 0.92839 0.93563 0.93736 0.92893 0.92056 0.93054 0.91461 0.92519 0.74731 0.81876 0.80777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.54 11.25 55.49 0.62 -22.92 16 2 C 0.01 0.26 4.96 -17.43 -0.09 0.17 16 3 Si 0.89 20.87 29.58 -169.99 -5.03 15.84 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.25 -6.08 6.95 -15.06 -0.10 -6.19 16 8 H 0.07 1.80 5.88 -52.49 -0.31 1.49 16 9 N -0.59 -13.09 2.97 -164.53 -0.49 -13.58 16 10 C 0.17 3.81 5.27 -3.71 -0.02 3.79 16 11 C -0.14 -2.62 6.08 -26.61 -0.16 -2.78 16 12 C -0.11 -1.72 5.88 -26.69 -0.16 -1.88 16 13 C -0.13 -2.10 5.40 -26.39 -0.14 -2.24 16 14 C 0.16 3.02 3.03 -67.38 -0.20 2.82 16 15 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 16 C 0.14 2.56 4.44 -4.04 -0.02 2.54 16 17 N -0.68 -13.16 3.82 -61.50 -0.24 -13.40 16 18 C 0.56 11.14 7.79 -12.69 -0.10 11.04 16 19 O -0.55 -11.86 14.91 5.23 0.08 -11.79 16 20 C -0.14 -2.38 5.98 -104.58 -0.63 -3.00 16 21 C -0.09 -1.38 9.90 -39.00 -0.39 -1.76 16 22 C -0.23 -2.86 11.11 28.85 0.32 -2.54 16 23 S 0.20 2.37 23.02 -107.50 -2.47 -0.10 16 24 C -0.13 -2.04 6.87 30.01 0.21 -1.83 16 25 Cl 0.01 0.19 27.20 -51.86 -1.41 -1.22 16 26 H 0.25 6.53 8.31 -40.82 -0.34 6.19 16 27 H 0.08 2.09 6.20 -51.93 -0.32 1.77 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 1.39 7.42 -51.93 -0.39 1.01 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.41 8.12 5.93 -40.82 -0.24 7.88 16 38 H 0.16 2.52 7.10 -52.49 -0.37 2.14 16 39 H 0.17 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 339.89 15.07 5.12 5.12 Total: -1.00 -27.77 339.89 -10.28 -38.05 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -4.99 Total: 5.85 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -1.48 Total: -1.87 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.10 Total: -49.89 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.08 Total: -11.79 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -2.47 Total: -0.10 kcal Atomic # 17 Polarization: 0.19 SS G_CDS: -1.41 Total: -1.22 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.77 -10.28 -38.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024691209.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.930 kcal (2) G-P(sol) polarization free energy of solvation -27.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds