Wall clock time and date at job start Tue Mar 31 2020 15:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00155 * 2 1 4 4 H 1.48502 * 109.47079 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46988 * 300.00107 * 3 2 1 6 6 H 1.48495 * 109.47054 * 60.00256 * 3 2 1 7 7 C 1.38817 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00027 * 165.78509 * 7 2 1 9 9 N 1.36938 * 119.99881 * 345.51063 * 7 2 1 10 10 C 1.46930 * 120.63042 * 329.12927 * 9 7 2 11 11 C 1.53188 * 108.77583 * 233.58779 * 10 9 7 12 12 C 1.53043 * 109.31336 * 305.36554 * 11 10 9 13 13 C 1.53037 * 109.53888 * 61.36026 * 12 11 10 14 14 C 1.46918 * 120.63177 * 148.84690 * 9 7 2 15 15 H 1.08995 * 109.59295 * 246.20083 * 14 9 7 16 16 C 1.52999 * 109.58642 * 6.63186 * 14 9 7 17 17 N 1.46502 * 109.46948 * 299.82034 * 16 14 9 18 18 C 1.34777 * 120.00148 * 180.02562 * 17 16 14 19 19 O 1.21652 * 119.99867 * 0.02562 * 18 17 16 20 20 C 1.47041 * 120.00008 * 180.02562 * 18 17 16 21 21 C 1.44511 * 123.49214 * 359.72752 * 20 18 17 22 22 C 1.32700 * 113.09632 * 179.76356 * 21 20 18 23 23 S 1.75490 * 110.62978 * 0.48803 * 22 21 20 24 24 C 1.36228 * 123.49420 * 180.02562 * 20 18 17 25 25 Cl 1.73602 * 124.60215 * 0.02562 * 24 20 18 26 26 H 0.96998 * 120.00071 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.58679 * 353.37313 * 10 9 7 28 28 H 1.08998 * 109.58961 * 113.65652 * 10 9 7 29 29 H 1.08999 * 109.50286 * 65.31537 * 11 10 9 30 30 H 1.09001 * 109.50029 * 185.38328 * 11 10 9 31 31 H 1.08997 * 109.46249 * 181.38858 * 12 11 10 32 32 H 1.09005 * 109.45585 * 301.36103 * 12 11 10 33 33 H 1.09010 * 109.49355 * 58.59103 * 13 12 11 34 34 H 1.08996 * 109.49746 * 178.65340 * 13 12 11 35 35 H 1.09001 * 109.47345 * 59.81931 * 16 14 9 36 36 H 1.08997 * 109.47239 * 179.82533 * 16 14 9 37 37 H 0.97003 * 119.99535 * 0.02562 * 17 16 14 38 38 H 1.07996 * 123.44992 * 0.02562 * 21 20 18 39 39 H 1.08000 * 124.67844 * 180.19610 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0654 -1.2164 -0.2302 9 7 1.3582 -2.3694 0.2957 10 6 0.2175 -2.3754 1.2217 11 6 0.4815 -3.4074 2.3226 12 6 0.7787 -4.7654 1.6825 13 6 2.0321 -4.6573 0.8111 14 6 1.7821 -3.6384 -0.3112 15 1 0.9990 -4.0060 -0.9743 16 6 3.0713 -3.4215 -1.1061 17 7 2.8330 -2.4358 -2.1634 18 6 3.8335 -2.0848 -2.9955 19 8 4.9343 -2.5869 -2.8688 20 6 3.5945 -1.0951 -4.0563 21 6 2.3172 -0.4565 -4.2781 22 6 2.3343 0.4055 -5.2868 23 16 3.9258 0.4630 -6.0240 24 6 4.5525 -0.6893 -4.9356 25 17 6.1893 -1.2679 -4.9466 26 1 -0.4850 0.8400 0.0004 27 1 0.1032 -1.3871 1.6671 28 1 -0.6911 -2.6396 0.6806 29 1 1.3370 -3.0917 2.9197 30 1 -0.3975 -3.4905 2.9618 31 1 0.9427 -5.5072 2.4642 32 1 -0.0671 -5.0689 1.0656 33 1 2.8731 -4.3297 1.4225 34 1 2.2569 -5.6304 0.3747 35 1 3.8525 -3.0571 -0.4390 36 1 3.3857 -4.3646 -1.5529 37 1 1.9551 -2.0357 -2.2646 38 1 1.4398 -0.6570 -3.6811 39 1 1.4848 0.9875 -5.6122 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024691209.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:32 Heat of formation + Delta-G solvation = -3.906528 kcal Electronic energy + Delta-G solvation = -24280.514866 eV Core-core repulsion = 20761.572100 eV Total energy + Delta-G solvation = -3518.942766 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.95213 -39.41115 -38.10612 -37.41347 -35.67935 -34.87338 -32.35714 -31.65589 -30.57931 -27.97904 -26.88338 -25.03175 -23.78383 -22.58710 -22.17561 -20.81498 -20.28292 -19.46126 -18.40903 -17.59368 -17.27724 -16.79566 -16.16182 -15.75942 -15.53506 -15.35038 -14.93762 -14.84907 -14.61602 -14.40953 -14.35825 -14.04433 -13.97373 -13.59898 -13.36566 -12.84462 -12.79518 -12.60715 -12.55223 -12.29714 -12.15125 -12.03397 -12.01716 -11.79122 -11.52072 -11.13321 -11.06684 -10.73125 -10.50107 -9.97498 -9.78749 -9.44901 -8.53650 -7.81466 -5.27520 -0.47843 0.00090 0.67578 0.94685 1.17622 1.38333 1.45497 1.52517 2.31128 2.48207 2.53225 3.33483 3.59877 3.77319 4.00390 4.01978 4.20695 4.24463 4.28645 4.44904 4.56488 4.66411 4.68098 4.81755 4.88759 4.97353 5.01391 5.09299 5.15837 5.23635 5.29748 5.39460 5.48021 5.63849 5.65604 5.78167 5.85838 6.46536 6.71806 7.21981 7.32965 7.90364 8.43883 9.22566 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013943 B = 0.004789 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.723680 B = 5845.154522 C = 7004.904859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.024 4.024 3 Si 0.927 3.073 4 H -0.288 1.288 5 H -0.282 1.282 6 H -0.296 1.296 7 C -0.234 4.234 8 H 0.057 0.943 9 N -0.600 5.600 10 C 0.178 3.822 11 C -0.136 4.136 12 C -0.102 4.102 13 C -0.122 4.122 14 C 0.160 3.840 15 H 0.035 0.965 16 C 0.141 3.859 17 N -0.685 5.685 18 C 0.559 3.441 19 O -0.574 6.574 20 C -0.166 4.166 21 C -0.113 4.113 22 C -0.215 4.215 23 S 0.281 5.719 24 C -0.151 4.151 25 Cl 0.004 6.996 26 H 0.249 0.751 27 H 0.049 0.951 28 H 0.003 0.997 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.412 0.588 38 H 0.154 0.846 39 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.280 -2.807 -9.823 10.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.221 4.221 3 Si 0.757 3.243 4 H -0.214 1.214 5 H -0.208 1.208 6 H -0.223 1.223 7 C -0.364 4.364 8 H 0.074 0.926 9 N -0.325 5.325 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.140 4.140 13 C -0.161 4.161 14 C 0.054 3.946 15 H 0.053 0.947 16 C 0.017 3.983 17 N -0.335 5.335 18 C 0.345 3.655 19 O -0.456 6.456 20 C -0.186 4.186 21 C -0.142 4.142 22 C -0.350 4.350 23 S 0.545 5.455 24 C -0.298 4.298 25 Cl 0.032 6.968 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.022 0.978 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.250 0.750 38 H 0.172 0.828 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 3.682 -2.283 -10.925 11.753 hybrid contribution -0.449 0.512 1.619 1.756 sum 3.232 -1.771 -9.307 10.010 Atomic orbital electron populations 1.70100 1.05665 1.25240 1.55509 1.25348 0.95504 0.99463 1.01767 0.85827 0.78311 0.82901 0.77215 1.21414 1.20833 1.22276 1.19177 0.91525 0.85008 1.40737 0.92586 1.44256 1.36120 1.02599 1.49482 1.20576 0.87933 0.96998 0.89183 1.22054 1.00406 0.96679 0.98342 1.21341 0.97380 0.96432 0.98806 1.21964 0.98238 0.98655 0.97257 1.20976 0.93034 0.87636 0.92969 0.94728 1.21261 0.97653 0.90990 0.88418 1.45883 1.14079 1.42901 1.30669 1.17762 0.84365 0.81678 0.81658 1.90747 1.24333 1.56685 1.73846 1.20442 0.94565 1.03612 0.99966 1.21228 0.96332 0.97470 0.99125 1.25944 1.02484 1.05111 1.01449 1.82684 1.00989 1.33882 1.27983 1.25555 0.92531 1.06599 1.05081 1.98376 1.13514 1.87279 1.97600 0.94157 0.93266 0.97843 0.93749 0.91734 0.90834 0.92311 0.92933 0.90056 0.93763 0.90830 0.75046 0.82825 0.77474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.12 11.25 21.65 0.24 -48.88 16 2 C -0.02 -1.23 4.96 84.86 0.42 -0.81 16 3 Si 0.93 43.56 29.58 68.60 2.03 45.59 16 4 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 7 C -0.23 -11.65 6.95 84.03 0.58 -11.06 16 8 H 0.06 2.96 5.88 -2.91 -0.02 2.94 16 9 N -0.60 -26.92 2.97 -674.44 -2.00 -28.92 16 10 C 0.18 7.91 5.27 86.36 0.45 8.36 16 11 C -0.14 -4.76 6.08 30.67 0.19 -4.57 16 12 C -0.10 -2.99 5.88 30.62 0.18 -2.81 16 13 C -0.12 -3.76 5.40 30.82 0.17 -3.59 16 14 C 0.16 5.95 3.03 45.12 0.14 6.08 16 15 H 0.04 1.30 8.14 -2.39 -0.02 1.29 16 16 C 0.14 5.32 4.44 86.38 0.38 5.70 16 17 N -0.69 -26.92 3.82 -466.73 -1.78 -28.71 16 18 C 0.56 22.52 7.79 86.55 0.67 23.20 16 19 O -0.57 -25.51 14.91 -4.20 -0.06 -25.58 16 20 C -0.17 -5.77 5.98 -19.84 -0.12 -5.89 16 21 C -0.11 -3.38 9.90 22.70 0.22 -3.16 16 22 C -0.21 -4.84 11.11 66.65 0.74 -4.10 16 23 S 0.28 6.02 23.02 -56.49 -1.30 4.72 16 24 C -0.15 -4.65 6.87 67.35 0.46 -4.19 16 25 Cl 0.00 0.11 27.20 -2.72 -0.07 0.04 16 26 H 0.25 13.09 8.31 -92.71 -0.77 12.32 16 27 H 0.05 2.51 6.20 -2.38 -0.01 2.50 16 28 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 32 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.04 1.87 7.42 -2.39 -0.02 1.85 16 36 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.41 16.57 5.93 -92.71 -0.55 16.02 16 38 H 0.15 4.81 7.10 -2.91 -0.02 4.78 16 39 H 0.21 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -61.15 339.89 2.08 -59.07 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.53 Total: 19.52 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 4.50 Total: 3.15 kcal Atomic # 7 Polarization: -102.97 SS G_CDS: -3.54 Total: -106.51 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.06 Total: -25.58 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 6.02 SS G_CDS: -1.30 Total: 4.72 kcal Atomic # 17 Polarization: 0.11 SS G_CDS: -0.07 Total: 0.04 kcal Total: -61.15 2.08 -59.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024691209.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.163 kcal (2) G-P(sol) polarization free energy of solvation -61.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds