Wall clock time and date at job start Tue Mar 31 2020 15:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99470 * 2 1 4 4 H 1.48506 * 109.47123 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47292 * 299.99816 * 3 2 1 6 6 H 1.48503 * 109.47504 * 60.00131 * 3 2 1 7 7 C 1.38807 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99861 * 165.34873 * 7 2 1 9 9 N 1.36934 * 120.00160 * 345.35576 * 7 2 1 10 10 C 1.46923 * 120.62993 * 328.35061 * 9 7 2 11 11 C 1.53192 * 108.77687 * 233.58880 * 10 9 7 12 12 C 1.53045 * 109.31026 * 305.36562 * 11 10 9 13 13 C 1.53042 * 109.53917 * 61.36861 * 12 11 10 14 14 C 1.46926 * 120.63105 * 148.33423 * 9 7 2 15 15 H 1.08997 * 109.70283 * 246.26805 * 14 9 7 16 16 C 1.53004 * 109.58580 * 6.62290 * 14 9 7 17 17 N 1.46498 * 109.47299 * 299.19527 * 16 14 9 18 18 C 1.34778 * 120.00095 * 180.02562 * 17 16 14 19 19 O 1.21697 * 119.99878 * 359.97438 * 18 17 16 20 20 C 1.46578 * 119.99584 * 180.02562 * 18 17 16 21 21 C 1.36678 * 125.44746 * 180.02562 * 20 18 17 22 22 C 1.37523 * 113.28642 * 179.97438 * 21 20 18 23 23 Cl 1.73595 * 122.46019 * 180.02562 * 22 21 20 24 24 C 1.33878 * 115.07872 * 359.97438 * 22 21 20 25 25 S 1.70606 * 110.96093 * 359.72528 * 24 22 21 26 26 H 0.96998 * 120.00486 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.58264 * 113.80574 * 10 9 7 28 28 H 1.08996 * 109.70289 * 353.45024 * 10 9 7 29 29 H 1.09003 * 109.49743 * 185.41690 * 11 10 9 30 30 H 1.08998 * 109.49741 * 65.31973 * 11 10 9 31 31 H 1.08993 * 109.46325 * 301.34380 * 12 11 10 32 32 H 1.09005 * 109.44456 * 181.37901 * 12 11 10 33 33 H 1.09000 * 109.49735 * 178.67944 * 13 12 11 34 34 H 1.09000 * 109.52598 * 58.59523 * 13 12 11 35 35 H 1.09004 * 109.46967 * 179.19918 * 16 14 9 36 36 H 1.09004 * 109.47127 * 59.19738 * 16 14 9 37 37 H 0.97001 * 119.99847 * 0.27901 * 17 16 14 38 38 H 1.07999 * 123.35585 * 359.97438 * 21 20 18 39 39 H 1.08003 * 124.51814 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0640 -1.2173 -0.2360 9 7 1.3590 -2.3686 0.3009 10 6 0.2313 -2.3753 1.2426 11 6 0.5077 -3.4127 2.3354 12 6 0.7919 -4.7689 1.6855 13 6 2.0335 -4.6606 0.7973 14 6 1.7745 -3.6373 -0.3128 15 1 0.9858 -4.0031 -0.9702 16 6 3.0560 -3.4211 -1.1203 17 7 2.8049 -2.4439 -2.1825 18 6 3.7969 -2.0952 -3.0256 19 8 4.9014 -2.5916 -2.9041 20 6 3.5457 -1.1171 -4.0880 21 6 4.4662 -0.6847 -5.0012 22 6 3.9608 0.2371 -5.8879 23 17 4.9238 0.9430 -7.1479 24 6 2.6713 0.5492 -5.7086 25 16 2.0098 -0.3193 -4.3976 26 1 -0.4851 0.8400 -0.0004 27 1 -0.6850 -2.6372 0.7135 28 1 0.1236 -1.3890 1.6939 29 1 -0.3629 -3.4964 2.9861 30 1 1.3722 -3.1019 2.9219 31 1 -0.0632 -5.0675 1.0794 32 1 0.9648 -5.5142 2.4620 33 1 2.2491 -5.6325 0.3533 34 1 2.8841 -4.3383 1.3979 35 1 3.3703 -4.3663 -1.5630 36 1 3.8415 -3.0489 -0.4625 37 1 1.9256 -2.0452 -2.2768 38 1 5.4885 -1.0323 -5.0241 39 1 2.1218 1.2530 -6.3161 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024692356.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:57 Heat of formation + Delta-G solvation = 5.565775 kcal Electronic energy + Delta-G solvation = -23966.530809 eV Core-core repulsion = 20447.998793 eV Total energy + Delta-G solvation = -3518.532016 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.45706 -38.14122 -37.51135 -35.94459 -34.24944 -33.12549 -31.09837 -30.01197 -29.56347 -26.33536 -25.26712 -24.13386 -22.21855 -21.26040 -20.55000 -19.35625 -19.13777 -18.30599 -16.57960 -16.12614 -15.70186 -15.46878 -15.01475 -14.56235 -14.08139 -13.96766 -13.48260 -13.43248 -13.34669 -13.14727 -12.89165 -12.70378 -12.48216 -12.09086 -11.85184 -11.38025 -11.27852 -11.23583 -11.00883 -10.84260 -10.75216 -10.59970 -10.33191 -10.19130 -10.04714 -9.75306 -9.54778 -9.37978 -8.92754 -8.66108 -8.45061 -8.29839 -6.72298 -5.91526 -3.38058 0.51746 1.31473 1.68183 2.22569 2.54440 3.26815 3.37460 3.41941 3.50864 3.71132 4.37528 4.85428 5.15011 5.19803 5.25705 5.27223 5.44530 5.59251 5.63731 5.67996 5.89226 5.94050 6.02141 6.08072 6.09542 6.24791 6.32191 6.36274 6.55013 6.65966 6.68729 6.80005 6.90205 7.02518 7.32101 7.58146 7.73263 8.05782 8.33819 8.64213 9.09488 9.70603 10.29369 11.15020 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015770 B = 0.004278 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.146981 B = 6544.078582 C = 7589.021942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.014 3.986 3 Si 0.880 3.120 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.287 1.287 7 C -0.255 4.255 8 H 0.069 0.931 9 N -0.588 5.588 10 C 0.174 3.826 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.033 0.967 16 C 0.135 3.865 17 N -0.686 5.686 18 C 0.581 3.419 19 O -0.548 6.548 20 C -0.244 4.244 21 C -0.067 4.067 22 C -0.059 4.059 23 Cl -0.058 7.058 24 C -0.251 4.251 25 S 0.287 5.713 26 H 0.254 0.746 27 H 0.019 0.981 28 H 0.082 0.918 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.413 0.587 38 H 0.160 0.840 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.368 -2.966 -7.804 8.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.186 4.186 3 Si 0.710 3.290 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.214 1.214 7 C -0.384 4.384 8 H 0.087 0.913 9 N -0.313 5.313 10 C 0.049 3.951 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.011 3.989 17 N -0.337 5.337 18 C 0.366 3.634 19 O -0.429 6.429 20 C -0.366 4.366 21 C -0.100 4.100 22 C -0.100 4.100 23 Cl -0.029 7.029 24 C -0.390 4.390 25 S 0.554 5.446 26 H 0.065 0.935 27 H 0.037 0.963 28 H 0.101 0.899 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.251 0.749 38 H 0.178 0.822 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.636 -3.173 -7.140 7.840 hybrid contribution 1.456 1.523 -0.793 2.251 sum 2.092 -1.650 -7.933 8.368 Atomic orbital electron populations 1.70011 1.05076 1.25513 1.53255 1.25026 0.95114 0.97959 1.00478 0.86544 0.80037 0.84686 0.77760 1.20030 1.21169 1.21356 1.19220 0.92182 0.84127 1.42916 0.91327 1.44075 1.37378 1.02021 1.47797 1.20733 0.88689 0.97399 0.88282 1.22195 1.00066 0.96567 0.99536 1.21360 0.97633 0.97377 0.98121 1.21936 0.98355 0.98201 0.98195 1.20743 0.93227 0.88636 0.92125 0.94971 1.21370 0.98669 0.90485 0.88391 1.45898 1.14114 1.43447 1.30211 1.16797 0.84956 0.80903 0.80718 1.90777 1.23221 1.55568 1.73294 1.24744 0.99193 1.07961 1.04658 1.20393 1.01308 0.95737 0.92603 1.19476 0.92153 1.01900 0.96449 1.98346 1.71221 1.82992 1.50380 1.25341 0.98795 1.08706 1.06126 1.83824 1.08562 1.31558 1.20623 0.93542 0.96282 0.89944 0.93513 0.92804 0.92849 0.93673 0.92957 0.92007 0.92215 0.91159 0.74906 0.82236 0.80640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.19 11.32 55.49 0.63 -22.56 16 2 C 0.01 0.35 4.95 -17.43 -0.09 0.27 16 3 Si 0.88 20.50 29.58 -169.99 -5.03 15.47 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.25 -6.14 6.97 -15.06 -0.11 -6.25 16 8 H 0.07 1.73 5.90 -52.49 -0.31 1.42 16 9 N -0.59 -12.94 2.97 -164.78 -0.49 -13.42 16 10 C 0.17 3.78 5.26 -3.71 -0.02 3.76 16 11 C -0.14 -2.58 6.08 -26.61 -0.16 -2.74 16 12 C -0.11 -1.68 5.88 -26.69 -0.16 -1.84 16 13 C -0.13 -2.04 5.37 -26.61 -0.14 -2.19 16 14 C 0.16 2.96 3.00 -67.60 -0.20 2.76 16 15 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 16 C 0.13 2.47 4.43 -4.04 -0.02 2.45 16 17 N -0.69 -12.98 3.88 -61.65 -0.24 -13.22 16 18 C 0.58 11.14 7.78 -12.90 -0.10 11.04 16 19 O -0.55 -11.74 16.84 5.19 0.09 -11.65 16 20 C -0.24 -4.09 6.45 -36.78 -0.24 -4.33 16 21 C -0.07 -1.03 9.89 -40.41 -0.40 -1.43 16 22 C -0.06 -0.81 6.25 -41.37 -0.26 -1.07 16 23 Cl -0.06 -0.70 29.10 -51.86 -1.51 -2.21 16 24 C -0.25 -3.22 10.77 29.20 0.31 -2.91 16 25 S 0.29 4.21 22.15 -107.50 -2.38 1.83 16 26 H 0.25 6.48 8.31 -40.82 -0.34 6.14 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 2.02 6.27 -51.93 -0.33 1.70 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.07 1.41 7.38 -51.93 -0.38 1.03 16 37 H 0.41 8.03 6.54 -40.82 -0.27 7.76 16 38 H 0.16 2.35 8.06 -52.49 -0.42 1.93 16 39 H 0.18 1.80 8.06 -52.48 -0.42 1.37 16 LS Contribution 344.05 15.07 5.18 5.18 Total: -1.00 -26.84 344.05 -10.39 -37.24 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.07 Total: 5.83 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -1.57 Total: -2.48 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -0.10 Total: -49.20 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.47 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -2.38 Total: 1.83 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.51 Total: -2.21 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -26.84 -10.39 -37.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024692356.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.803 kcal (2) G-P(sol) polarization free energy of solvation -26.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds