Wall clock time and date at job start Tue Mar 31 2020 15:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 120.00068 * 2 1 4 4 H 1.48499 * 109.46955 * 239.99780 * 3 2 1 5 5 H 1.48495 * 109.46980 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47202 * 120.00111 * 3 2 1 7 7 C 1.38813 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00239 * 190.08317 * 7 2 1 9 9 N 1.36938 * 119.99536 * 10.37242 * 7 2 1 10 10 C 1.46917 * 120.63460 * 32.49237 * 9 7 2 11 11 C 1.53195 * 108.77633 * 126.37113 * 10 9 7 12 12 C 1.53041 * 109.31019 * 54.63745 * 11 10 9 13 13 C 1.53044 * 109.53732 * 298.63528 * 12 11 10 14 14 C 1.46931 * 120.62590 * 212.21876 * 9 7 2 15 15 H 1.08998 * 109.58902 * 113.83987 * 14 9 7 16 16 C 1.52999 * 109.58765 * 353.41277 * 14 9 7 17 17 N 1.46507 * 109.46967 * 60.11802 * 16 14 9 18 18 C 1.34777 * 119.99819 * 180.02562 * 17 16 14 19 19 O 1.21705 * 120.00001 * 359.97438 * 18 17 16 20 20 C 1.46565 * 119.99876 * 180.02562 * 18 17 16 21 21 C 1.36673 * 125.45193 * 179.72213 * 20 18 17 22 22 C 1.37535 * 113.28792 * 179.79699 * 21 20 18 23 23 Cl 1.73596 * 122.46176 * 180.21465 * 22 21 20 24 24 C 1.33873 * 115.07679 * 0.48958 * 22 21 20 25 25 S 1.70610 * 110.96181 * 359.72893 * 24 22 21 26 26 H 0.96998 * 119.99693 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.58977 * 246.16293 * 10 9 7 28 28 H 1.09007 * 109.58828 * 6.44217 * 10 9 7 29 29 H 1.08999 * 109.49944 * 174.58373 * 11 10 9 30 30 H 1.08996 * 109.49909 * 294.68289 * 11 10 9 31 31 H 1.09004 * 109.46116 * 58.65738 * 12 11 10 32 32 H 1.09001 * 109.46142 * 178.62543 * 12 11 10 33 33 H 1.08995 * 109.49498 * 181.32193 * 13 12 11 34 34 H 1.08996 * 109.49635 * 301.38043 * 13 12 11 35 35 H 1.09001 * 109.47106 * 180.11897 * 16 14 9 36 36 H 1.08995 * 109.47407 * 300.12078 * 16 14 9 37 37 H 0.96996 * 119.99581 * 0.02562 * 17 16 14 38 38 H 1.08004 * 123.35695 * 359.95477 * 21 20 18 39 39 H 1.08001 * 124.52145 * 179.74425 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0778 -1.2093 0.1643 9 7 1.3424 -2.3784 -0.2125 10 6 0.1672 -2.4232 -1.0931 11 6 0.3851 -3.5094 -2.1512 12 6 0.7011 -4.8361 -1.4570 13 6 1.9873 -4.6926 -0.6400 14 6 1.7909 -3.6210 0.4307 15 1 1.0382 -3.9553 1.1446 16 6 3.1155 -3.3741 1.1555 17 7 2.9282 -2.3402 2.1765 18 6 3.9668 -1.9557 2.9446 19 8 5.0601 -2.4678 2.7905 20 6 3.7793 -0.9218 3.9664 21 6 4.7495 -0.4531 4.8072 22 6 4.2997 0.5221 5.6664 23 17 5.3343 1.2865 6.8321 24 6 3.0039 0.8345 5.5417 25 16 2.2686 -0.0910 4.3115 26 1 -0.4849 0.8400 -0.0004 27 1 -0.7207 -2.6578 -0.5061 28 1 0.0384 -1.4564 -1.5800 29 1 -0.5181 -3.6190 -2.7514 30 1 1.2184 -3.2281 -2.7951 31 1 -0.1219 -5.1044 -0.7945 32 1 0.8326 -5.6161 -2.2069 33 1 2.2244 -5.6444 -0.1648 34 1 2.8057 -4.4008 -1.2982 35 1 3.4476 -4.2975 1.6302 36 1 3.8665 -3.0441 0.4378 37 1 2.0568 -1.9324 2.2995 38 1 5.7685 -0.8109 4.7963 39 1 2.4922 1.5740 6.1399 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024692357.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:00 Heat of formation + Delta-G solvation = 6.011178 kcal Electronic energy + Delta-G solvation = -23995.309259 eV Core-core repulsion = 20476.796557 eV Total energy + Delta-G solvation = -3518.512702 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.45666 -38.14473 -37.51176 -35.94185 -34.24337 -33.13421 -31.09706 -29.99983 -29.56255 -26.33135 -25.27096 -24.12713 -22.20333 -21.25561 -20.55341 -19.34849 -19.13112 -18.30428 -16.57952 -16.12435 -15.70498 -15.46700 -15.01107 -14.55118 -14.10147 -13.95375 -13.47140 -13.42861 -13.33971 -13.14546 -12.88191 -12.70077 -12.47685 -12.07978 -11.84645 -11.39414 -11.27742 -11.23658 -10.95907 -10.84849 -10.75127 -10.61444 -10.34021 -10.19051 -10.03495 -9.75493 -9.53609 -9.40538 -8.92365 -8.65219 -8.44907 -8.28085 -6.70020 -5.90551 -3.39557 0.52246 1.31716 1.68546 2.23009 2.54618 3.28967 3.34906 3.39680 3.51358 3.71468 4.36934 4.85595 5.15835 5.20405 5.26137 5.27654 5.44923 5.59898 5.64703 5.68398 5.89754 5.94261 6.02491 6.08509 6.10400 6.25781 6.32835 6.36791 6.55760 6.66989 6.70012 6.81418 6.90813 7.02889 7.34947 7.62828 7.72071 8.06298 8.35566 8.64546 9.10469 9.70694 10.29653 11.15717 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.016020 B = 0.004300 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.358419 B = 6509.471528 C = 7560.293922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.014 3.986 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.255 4.255 8 H 0.067 0.933 9 N -0.589 5.589 10 C 0.173 3.827 11 C -0.145 4.145 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.033 0.967 16 C 0.135 3.865 17 N -0.686 5.686 18 C 0.581 3.419 19 O -0.548 6.548 20 C -0.243 4.243 21 C -0.068 4.068 22 C -0.059 4.059 23 Cl -0.058 7.058 24 C -0.251 4.251 25 S 0.285 5.715 26 H 0.256 0.744 27 H 0.018 0.982 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.413 0.587 38 H 0.160 0.840 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.817 -2.456 7.895 8.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.185 4.185 3 Si 0.712 3.288 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.384 4.384 8 H 0.085 0.915 9 N -0.313 5.313 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.011 3.989 17 N -0.336 5.336 18 C 0.366 3.634 19 O -0.429 6.429 20 C -0.364 4.364 21 C -0.101 4.101 22 C -0.099 4.099 23 Cl -0.029 7.029 24 C -0.390 4.390 25 S 0.553 5.447 26 H 0.066 0.934 27 H 0.037 0.963 28 H 0.105 0.895 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.251 0.749 38 H 0.178 0.822 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.035 -2.676 7.282 7.826 hybrid contribution 1.541 1.531 0.693 2.280 sum 2.576 -1.144 7.975 8.458 Atomic orbital electron populations 1.69957 1.05053 1.25679 1.53393 1.25068 0.95197 0.97883 1.00382 0.86661 0.79333 0.83970 0.78839 1.20877 1.21345 1.20241 1.19139 0.91099 0.83603 1.44608 0.91497 1.44051 1.32994 1.03127 1.51148 1.20784 0.88023 0.96984 0.89428 1.22204 0.99855 0.96805 0.99546 1.21361 0.97351 0.97428 0.98352 1.21865 0.98154 0.98089 0.98617 1.20657 0.92840 0.88750 0.92461 0.94986 1.21370 0.98602 0.89320 0.89604 1.45907 1.12758 1.40188 1.34748 1.16798 0.84893 0.81252 0.80454 1.90777 1.25014 1.56625 1.70503 1.24731 0.98903 1.07008 1.05776 1.20392 1.01114 0.95197 0.93383 1.19475 0.91507 1.00758 0.98208 1.98345 1.66950 1.80469 1.57179 1.25332 0.98353 1.08606 1.06708 1.83781 1.08212 1.28026 1.24683 0.93412 0.96345 0.89535 0.93538 0.92858 0.92857 0.93697 0.92938 0.92050 0.92219 0.91200 0.74888 0.82236 0.80634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.23 11.12 55.49 0.62 -22.61 16 2 C 0.01 0.36 5.05 -17.43 -0.09 0.27 16 3 Si 0.88 20.42 29.57 -169.99 -5.03 15.40 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.25 -6.13 6.91 -15.06 -0.10 -6.24 16 8 H 0.07 1.68 5.92 -52.49 -0.31 1.37 16 9 N -0.59 -12.97 2.98 -165.03 -0.49 -13.46 16 10 C 0.17 3.76 5.25 -3.71 -0.02 3.74 16 11 C -0.14 -2.60 6.08 -26.61 -0.16 -2.76 16 12 C -0.11 -1.69 5.89 -26.69 -0.16 -1.85 16 13 C -0.13 -2.06 5.34 -26.83 -0.14 -2.20 16 14 C 0.16 2.97 3.00 -67.82 -0.20 2.77 16 15 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 16 C 0.13 2.47 4.42 -4.04 -0.02 2.45 16 17 N -0.69 -13.01 3.86 -61.65 -0.24 -13.25 16 18 C 0.58 11.19 7.78 -12.90 -0.10 11.09 16 19 O -0.55 -11.77 16.84 5.18 0.09 -11.68 16 20 C -0.24 -4.11 6.45 -36.79 -0.24 -4.35 16 21 C -0.07 -1.05 9.89 -40.40 -0.40 -1.45 16 22 C -0.06 -0.81 6.25 -41.37 -0.26 -1.07 16 23 Cl -0.06 -0.71 29.10 -51.86 -1.51 -2.22 16 24 C -0.25 -3.26 10.77 29.20 0.31 -2.95 16 25 S 0.29 4.23 22.15 -107.50 -2.38 1.85 16 26 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.09 2.14 6.18 -51.93 -0.32 1.81 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 1.40 7.42 -51.93 -0.39 1.01 16 37 H 0.41 8.05 6.50 -40.82 -0.27 7.79 16 38 H 0.16 2.37 8.06 -52.48 -0.42 1.95 16 39 H 0.18 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 343.73 15.07 5.18 5.18 Total: -1.00 -26.76 343.73 -10.40 -37.16 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -5.07 Total: 6.17 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -1.58 Total: -2.54 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -0.11 Total: -49.32 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.40 kcal Atomic # 16 Polarization: 4.23 SS G_CDS: -2.38 Total: 1.85 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.51 Total: -2.22 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -26.76 -10.40 -37.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024692357.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.173 kcal (2) G-P(sol) polarization free energy of solvation -26.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds