Wall clock time and date at job start Tue Mar 31 2020 15:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 120.00068 * 2 1 4 4 H 1.48499 * 109.46955 * 239.99780 * 3 2 1 5 5 H 1.48495 * 109.46980 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47202 * 120.00111 * 3 2 1 7 7 C 1.38813 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00239 * 190.08317 * 7 2 1 9 9 N 1.36938 * 119.99536 * 10.37242 * 7 2 1 10 10 C 1.46917 * 120.63460 * 32.49237 * 9 7 2 11 11 C 1.53195 * 108.77633 * 126.37113 * 10 9 7 12 12 C 1.53041 * 109.31019 * 54.63745 * 11 10 9 13 13 C 1.53044 * 109.53732 * 298.63528 * 12 11 10 14 14 C 1.46931 * 120.62590 * 212.21876 * 9 7 2 15 15 H 1.08998 * 109.58902 * 113.83987 * 14 9 7 16 16 C 1.52999 * 109.58765 * 353.41277 * 14 9 7 17 17 N 1.46507 * 109.46967 * 60.11802 * 16 14 9 18 18 C 1.34777 * 119.99819 * 180.02562 * 17 16 14 19 19 O 1.21705 * 120.00001 * 359.97438 * 18 17 16 20 20 C 1.46565 * 119.99876 * 180.02562 * 18 17 16 21 21 C 1.36673 * 125.45193 * 179.72213 * 20 18 17 22 22 C 1.37535 * 113.28792 * 179.79699 * 21 20 18 23 23 Cl 1.73596 * 122.46176 * 180.21465 * 22 21 20 24 24 C 1.33873 * 115.07679 * 0.48958 * 22 21 20 25 25 S 1.70610 * 110.96181 * 359.72893 * 24 22 21 26 26 H 0.96998 * 119.99693 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.58977 * 246.16293 * 10 9 7 28 28 H 1.09007 * 109.58828 * 6.44217 * 10 9 7 29 29 H 1.08999 * 109.49944 * 174.58373 * 11 10 9 30 30 H 1.08996 * 109.49909 * 294.68289 * 11 10 9 31 31 H 1.09004 * 109.46116 * 58.65738 * 12 11 10 32 32 H 1.09001 * 109.46142 * 178.62543 * 12 11 10 33 33 H 1.08995 * 109.49498 * 181.32193 * 13 12 11 34 34 H 1.08996 * 109.49635 * 301.38043 * 13 12 11 35 35 H 1.09001 * 109.47106 * 180.11897 * 16 14 9 36 36 H 1.08995 * 109.47407 * 300.12078 * 16 14 9 37 37 H 0.96996 * 119.99581 * 0.02562 * 17 16 14 38 38 H 1.08004 * 123.35695 * 359.95477 * 21 20 18 39 39 H 1.08001 * 124.52145 * 179.74425 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0778 -1.2093 0.1643 9 7 1.3424 -2.3784 -0.2125 10 6 0.1672 -2.4232 -1.0931 11 6 0.3851 -3.5094 -2.1512 12 6 0.7011 -4.8361 -1.4570 13 6 1.9873 -4.6926 -0.6400 14 6 1.7909 -3.6210 0.4307 15 1 1.0382 -3.9553 1.1446 16 6 3.1155 -3.3741 1.1555 17 7 2.9282 -2.3402 2.1765 18 6 3.9668 -1.9557 2.9446 19 8 5.0601 -2.4678 2.7905 20 6 3.7793 -0.9218 3.9664 21 6 4.7495 -0.4531 4.8072 22 6 4.2997 0.5221 5.6664 23 17 5.3343 1.2865 6.8321 24 6 3.0039 0.8345 5.5417 25 16 2.2686 -0.0910 4.3115 26 1 -0.4849 0.8400 -0.0004 27 1 -0.7207 -2.6578 -0.5061 28 1 0.0384 -1.4564 -1.5800 29 1 -0.5181 -3.6190 -2.7514 30 1 1.2184 -3.2281 -2.7951 31 1 -0.1219 -5.1044 -0.7945 32 1 0.8326 -5.6161 -2.2069 33 1 2.2244 -5.6444 -0.1648 34 1 2.8057 -4.4008 -1.2982 35 1 3.4476 -4.2975 1.6302 36 1 3.8665 -3.0441 0.4378 37 1 2.0568 -1.9324 2.2995 38 1 5.7685 -0.8109 4.7963 39 1 2.4922 1.5740 6.1399 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024692357.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:59 Heat of formation + Delta-G solvation = -7.622473 kcal Electronic energy + Delta-G solvation = -23995.900458 eV Core-core repulsion = 20476.796557 eV Total energy + Delta-G solvation = -3519.103901 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.93153 -39.52112 -38.84530 -37.02555 -35.75481 -34.89186 -32.59344 -31.70187 -30.82184 -27.83425 -26.85937 -25.49942 -23.79796 -22.65588 -22.03977 -20.76825 -20.47297 -19.67210 -18.24304 -17.45846 -17.31397 -16.90382 -16.32826 -16.17588 -15.74533 -15.48293 -14.86767 -14.79195 -14.69752 -14.49948 -14.24673 -14.03579 -13.88213 -13.58198 -13.43813 -12.86308 -12.79774 -12.57794 -12.43561 -12.35328 -12.32705 -12.02273 -11.86552 -11.77700 -11.50660 -11.30833 -11.07997 -10.96766 -10.50588 -10.17939 -9.87100 -9.53640 -8.51364 -7.80968 -5.30092 -0.67893 0.18246 0.49878 1.04701 1.40977 1.44524 1.46815 1.50226 2.06856 2.29360 2.49732 3.34500 3.59099 3.72736 3.93217 3.99551 4.11650 4.24306 4.29084 4.44244 4.49371 4.57475 4.66025 4.73148 4.84301 4.89317 4.91292 5.02149 5.16367 5.24601 5.30436 5.36635 5.48645 5.53662 5.67108 5.76815 5.88165 6.47363 6.54956 7.13836 7.22682 7.90077 8.44199 9.22909 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.016020 B = 0.004300 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.358419 B = 6509.471528 C = 7560.293922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.019 4.019 3 Si 0.918 3.082 4 H -0.293 1.293 5 H -0.289 1.289 6 H -0.272 1.272 7 C -0.240 4.240 8 H 0.056 0.944 9 N -0.602 5.602 10 C 0.178 3.822 11 C -0.137 4.137 12 C -0.102 4.102 13 C -0.122 4.122 14 C 0.159 3.841 15 H 0.035 0.965 16 C 0.138 3.862 17 N -0.688 5.688 18 C 0.580 3.420 19 O -0.578 6.578 20 C -0.278 4.278 21 C -0.058 4.058 22 C -0.071 4.071 23 Cl -0.040 7.040 24 C -0.226 4.226 25 S 0.282 5.718 26 H 0.250 0.750 27 H 0.003 0.997 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.080 0.920 36 H 0.050 0.950 37 H 0.410 0.590 38 H 0.161 0.839 39 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.881 -3.103 8.769 9.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.216 4.216 3 Si 0.748 3.252 4 H -0.220 1.220 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.371 4.371 8 H 0.074 0.926 9 N -0.327 5.327 10 C 0.053 3.947 11 C -0.176 4.176 12 C -0.140 4.140 13 C -0.162 4.162 14 C 0.053 3.947 15 H 0.053 0.947 16 C 0.014 3.986 17 N -0.337 5.337 18 C 0.367 3.633 19 O -0.462 6.462 20 C -0.399 4.399 21 C -0.092 4.092 22 C -0.111 4.111 23 Cl -0.012 7.012 24 C -0.365 4.365 25 S 0.550 5.450 26 H 0.060 0.940 27 H 0.021 0.979 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.068 0.932 37 H 0.247 0.753 38 H 0.178 0.822 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 1.101 -3.340 8.158 8.883 hybrid contribution 1.556 1.745 0.487 2.388 sum 2.657 -1.595 8.645 9.183 Atomic orbital electron populations 1.70051 1.05704 1.25464 1.55162 1.25389 0.95533 0.99367 1.01337 0.86102 0.78417 0.82365 0.78338 1.22011 1.21498 1.19782 1.19099 0.90601 0.84520 1.42869 0.92616 1.44227 1.32844 1.03758 1.51847 1.20598 0.87488 0.96683 0.89962 1.22066 1.00349 0.96749 0.98411 1.21344 0.97153 0.96615 0.98887 1.21824 0.98208 0.98386 0.97774 1.20814 0.92667 0.87964 0.93208 0.94707 1.21378 0.97974 0.89954 0.89288 1.45935 1.12587 1.40336 1.34836 1.17084 0.84327 0.81306 0.80583 1.90743 1.25907 1.57920 1.71602 1.24540 1.00535 1.08123 1.06679 1.20547 1.00930 0.94892 0.92845 1.19460 0.92159 1.00833 0.98653 1.98353 1.66475 1.80023 1.56315 1.25675 0.97897 1.07635 1.05248 1.83814 1.07459 1.28268 1.25502 0.94012 0.97884 0.92985 0.91822 0.93782 0.92313 0.90845 0.89831 0.92842 0.90213 0.93207 0.75255 0.82158 0.77473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.49 11.12 21.65 0.24 -48.25 16 2 C -0.02 -0.96 5.05 84.86 0.43 -0.53 16 3 Si 0.92 42.28 29.57 68.60 2.03 44.31 16 4 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 5 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.24 -11.72 6.91 84.03 0.58 -11.14 16 8 H 0.06 2.85 5.92 -2.91 -0.02 2.83 16 9 N -0.60 -26.57 2.98 -676.03 -2.01 -28.58 16 10 C 0.18 7.78 5.25 86.37 0.45 8.24 16 11 C -0.14 -4.72 6.08 30.67 0.19 -4.53 16 12 C -0.10 -2.93 5.89 30.62 0.18 -2.75 16 13 C -0.12 -3.65 5.34 30.53 0.16 -3.49 16 14 C 0.16 5.76 3.00 44.83 0.13 5.90 16 15 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 16 C 0.14 4.99 4.42 86.38 0.38 5.38 16 17 N -0.69 -26.23 3.86 -467.18 -1.80 -28.03 16 18 C 0.58 22.54 7.78 86.41 0.67 23.21 16 19 O -0.58 -25.12 16.84 -4.36 -0.07 -25.19 16 20 C -0.28 -9.34 6.45 24.08 0.16 -9.18 16 21 C -0.06 -1.75 9.89 21.74 0.22 -1.54 16 22 C -0.07 -1.83 6.25 21.11 0.13 -1.70 16 23 Cl -0.04 -0.89 29.10 -2.72 -0.08 -0.97 16 24 C -0.23 -5.31 10.77 66.83 0.72 -4.59 16 25 S 0.28 8.10 22.15 -56.49 -1.25 6.85 16 26 H 0.25 13.08 8.31 -92.71 -0.77 12.31 16 27 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 28 H 0.05 2.63 6.18 -2.38 -0.01 2.61 16 29 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 35 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.05 2.01 7.42 -2.39 -0.02 1.99 16 37 H 0.41 16.14 6.50 -92.71 -0.60 15.53 16 38 H 0.16 4.69 8.06 -2.91 -0.02 4.67 16 39 H 0.21 3.49 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -57.93 343.73 1.93 -56.00 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 0.48 Total: 20.60 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 4.40 Total: 3.27 kcal Atomic # 7 Polarization: -101.29 SS G_CDS: -3.57 Total: -104.86 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.07 Total: -25.19 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 16 Polarization: 8.10 SS G_CDS: -1.25 Total: 6.85 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.97 kcal Total: -57.93 1.93 -56.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024692357.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.376 kcal (2) G-P(sol) polarization free energy of solvation -57.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds