Wall clock time and date at job start Tue Mar 31 2020 15:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00106 * 2 1 4 4 H 1.48500 * 109.47232 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47034 * 120.00061 * 3 2 1 6 6 H 1.48499 * 109.47122 * 239.99964 * 3 2 1 7 7 C 1.38812 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99789 * 167.45578 * 7 2 1 9 9 N 1.36940 * 119.99929 * 347.44882 * 7 2 1 10 10 C 1.46926 * 120.63024 * 328.91235 * 9 7 2 11 11 C 1.53192 * 108.77459 * 233.58701 * 10 9 7 12 12 C 1.53042 * 109.31105 * 305.36623 * 11 10 9 13 13 C 1.53039 * 109.53935 * 61.36584 * 12 11 10 14 14 C 1.46928 * 120.62846 * 148.63387 * 9 7 2 15 15 H 1.08995 * 109.58273 * 246.20188 * 14 9 7 16 16 C 1.53003 * 109.58520 * 6.62625 * 14 9 7 17 17 N 1.46498 * 109.47219 * 299.60755 * 16 14 9 18 18 C 1.34777 * 119.99893 * 180.02562 * 17 16 14 19 19 O 1.21639 * 120.00108 * 359.97438 * 18 17 16 20 20 C 1.47180 * 119.99850 * 179.97438 * 18 17 16 21 21 C 1.35969 * 123.45626 * 359.70108 * 20 18 17 22 22 S 1.70453 * 110.84407 * 179.86023 * 21 20 18 23 23 C 1.75503 * 92.45405 * 0.34866 * 22 21 20 24 24 Cl 1.73605 * 124.71776 * 179.82678 * 23 22 21 25 25 C 1.32892 * 110.56366 * 359.80193 * 23 22 21 26 26 H 0.97005 * 120.00141 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.58509 * 353.37123 * 10 9 7 28 28 H 1.08998 * 109.58409 * 113.65630 * 10 9 7 29 29 H 1.08996 * 109.49746 * 65.31513 * 11 10 9 30 30 H 1.09001 * 109.49398 * 185.38584 * 11 10 9 31 31 H 1.08999 * 109.45905 * 181.38619 * 12 11 10 32 32 H 1.09006 * 109.46201 * 301.35940 * 12 11 10 33 33 H 1.09000 * 109.49728 * 58.58408 * 13 12 11 34 34 H 1.09004 * 109.49603 * 178.65227 * 13 12 11 35 35 H 1.09000 * 109.47267 * 59.60671 * 16 14 9 36 36 H 1.09005 * 109.46599 * 179.60710 * 16 14 9 37 37 H 0.96998 * 120.00067 * 359.97438 * 17 16 14 38 38 H 1.07998 * 124.57997 * 359.97005 * 21 20 18 39 39 H 1.08000 * 123.47624 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1039 1.6963 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0709 -1.2132 -0.2037 9 7 1.3499 -2.3740 0.2567 10 6 0.1855 -2.3962 1.1524 11 6 0.4202 -3.4489 2.2402 12 6 0.7332 -4.7950 1.5827 13 6 2.0090 -4.6718 0.7465 14 6 1.7889 -3.6320 -0.3627 15 1 1.0231 -3.9862 -1.0527 16 6 3.0985 -3.4014 -1.1195 17 7 2.8871 -2.3997 -2.1673 18 6 3.9090 -2.0349 -2.9669 19 8 5.0068 -2.5371 -2.8182 20 6 3.6964 -1.0288 -4.0199 21 6 2.4991 -0.4276 -4.2516 22 16 2.6172 0.6831 -5.5392 23 6 4.3182 0.3297 -5.7875 24 17 5.3152 1.0705 -7.0004 25 6 4.7371 -0.5834 -4.9175 26 1 -0.4850 0.8401 0.0004 27 1 0.0602 -1.4163 1.6131 28 1 -0.7088 -2.6492 0.5828 29 1 1.2600 -3.1453 2.8651 30 1 -0.4753 -3.5431 2.8546 31 1 0.8764 -5.5514 2.3543 32 1 -0.0964 -5.0861 0.9383 33 1 2.8338 -4.3566 1.3856 34 1 2.2445 -5.6369 0.2979 35 1 3.8612 -3.0467 -0.4263 36 1 3.4260 -4.3374 -1.5723 37 1 2.0116 -1.9994 -2.2862 38 1 1.5957 -0.6256 -3.6939 39 1 5.7510 -0.9539 -4.8847 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024693136.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:33 Heat of formation + Delta-G solvation = 5.736794 kcal Electronic energy + Delta-G solvation = -23985.164471 eV Core-core repulsion = 20466.639871 eV Total energy + Delta-G solvation = -3518.524600 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -39.53804 -37.92189 -37.15711 -36.16366 -34.23155 -33.12191 -31.06453 -29.97367 -29.30736 -26.19130 -25.18720 -24.13145 -22.19348 -21.32932 -20.60190 -19.30455 -18.88063 -18.21371 -16.91526 -16.29094 -15.66598 -15.17523 -14.73150 -14.47899 -14.07895 -13.92749 -13.52975 -13.43444 -13.36396 -13.26509 -12.86441 -12.57463 -12.45461 -12.05700 -11.85367 -11.57868 -11.49568 -11.23292 -10.97566 -10.83001 -10.79487 -10.59751 -10.34607 -10.19220 -10.03931 -9.64114 -9.51048 -9.33263 -8.86380 -8.66287 -8.49485 -8.20743 -6.72120 -5.90524 -3.37954 0.74832 1.03833 1.78427 1.99705 2.14279 3.29614 3.35440 3.40304 3.70886 3.86067 4.37683 4.99304 5.18009 5.25811 5.33398 5.36069 5.47366 5.60603 5.64248 5.69001 5.91319 5.93304 6.00862 6.10927 6.15356 6.28497 6.33204 6.38127 6.56198 6.67196 6.70016 6.82040 6.93099 7.10143 7.34365 7.61601 7.72706 8.17881 8.34576 8.77398 9.10189 9.71187 10.29409 11.15547 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015739 B = 0.004108 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.649171 B = 6814.552109 C = 7877.859203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.010 3.990 3 Si 0.887 3.113 4 H -0.289 1.289 5 H -0.283 1.283 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.070 0.930 9 N -0.589 5.589 10 C 0.173 3.827 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.033 0.967 16 C 0.135 3.865 17 N -0.685 5.685 18 C 0.571 3.429 19 O -0.558 6.558 20 C -0.141 4.141 21 C -0.192 4.192 22 S 0.223 5.777 23 C -0.180 4.180 24 Cl -0.020 7.020 25 C -0.065 4.065 26 H 0.255 0.745 27 H 0.086 0.914 28 H 0.018 0.982 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.413 0.587 38 H 0.185 0.815 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.129 -2.263 -8.626 9.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.189 4.189 3 Si 0.717 3.283 4 H -0.215 1.215 5 H -0.209 1.209 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.087 0.913 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.011 3.989 17 N -0.335 5.335 18 C 0.355 3.645 19 O -0.440 6.440 20 C -0.158 4.158 21 C -0.331 4.331 22 S 0.487 5.513 23 C -0.322 4.322 24 Cl 0.008 6.992 25 C -0.096 4.096 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.036 0.964 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.252 0.748 38 H 0.202 0.798 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.831 -1.431 -9.323 9.608 hybrid contribution 1.041 0.296 0.800 1.345 sum 2.871 -1.135 -8.524 9.066 Atomic orbital electron populations 1.69982 1.05078 1.25634 1.53734 1.25050 0.95180 0.97980 1.00727 0.86595 0.79200 0.83826 0.78727 1.21512 1.20935 1.20462 1.19180 0.91676 0.83830 1.43383 0.91285 1.44095 1.34157 1.02457 1.50608 1.20776 0.88114 0.97418 0.88943 1.22195 0.99891 0.96642 0.99628 1.21363 0.97449 0.97391 0.98303 1.22011 0.98115 0.98167 0.98397 1.20830 0.93028 0.88610 0.92242 0.94978 1.21320 0.98422 0.90113 0.89036 1.45851 1.13458 1.41936 1.32274 1.17396 0.84650 0.81399 0.81047 1.90735 1.24474 1.56502 1.72245 1.20123 0.92459 1.02695 1.00555 1.25946 1.03072 1.01239 1.02818 1.83065 1.01528 1.38991 1.27719 1.25023 0.98152 1.06850 1.02196 1.98351 1.67260 1.81047 1.52493 1.21136 1.00894 0.95140 0.92472 0.93506 0.89586 0.96380 0.92841 0.93546 0.93710 0.92891 0.92032 0.93026 0.91364 0.92414 0.74835 0.79796 0.82207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.41 11.14 55.49 0.62 -22.79 16 2 C 0.01 0.25 5.00 -17.43 -0.09 0.16 16 3 Si 0.89 20.59 29.57 -169.99 -5.03 15.56 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.25 -6.05 6.98 -15.06 -0.11 -6.15 16 8 H 0.07 1.73 5.87 -52.48 -0.31 1.42 16 9 N -0.59 -12.97 2.97 -164.52 -0.49 -13.46 16 10 C 0.17 3.77 5.26 -3.71 -0.02 3.75 16 11 C -0.14 -2.61 6.08 -26.61 -0.16 -2.77 16 12 C -0.11 -1.71 5.88 -26.69 -0.16 -1.87 16 13 C -0.13 -2.07 5.40 -26.39 -0.14 -2.21 16 14 C 0.16 2.97 3.03 -67.37 -0.20 2.77 16 15 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 16 C 0.13 2.48 4.44 -4.04 -0.02 2.47 16 17 N -0.69 -12.84 3.82 -61.46 -0.23 -13.07 16 18 C 0.57 10.94 7.79 -12.63 -0.10 10.84 16 19 O -0.56 -12.06 16.80 5.24 0.09 -11.97 16 20 C -0.14 -2.36 5.98 -104.63 -0.63 -2.99 16 21 C -0.19 -2.88 10.38 29.92 0.31 -2.57 16 22 S 0.22 2.82 23.02 -107.50 -2.47 0.34 16 23 C -0.18 -2.43 7.01 28.89 0.20 -2.22 16 24 Cl -0.02 -0.23 29.27 -51.86 -1.52 -1.75 16 25 C -0.06 -0.98 10.04 -38.98 -0.39 -1.38 16 26 H 0.25 6.57 8.31 -40.82 -0.34 6.23 16 27 H 0.09 2.14 6.15 -51.93 -0.32 1.82 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.07 1.38 7.41 -51.93 -0.38 1.00 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.41 7.87 5.90 -40.82 -0.24 7.63 16 38 H 0.18 2.72 7.01 -52.49 -0.37 2.35 16 39 H 0.16 2.34 8.06 -52.49 -0.42 1.92 16 LS Contribution 343.15 15.07 5.17 5.17 Total: -1.00 -27.01 343.15 -10.35 -37.36 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -4.98 Total: 6.77 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -0.10 Total: -49.32 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.56 kcal Atomic # 16 Polarization: 2.82 SS G_CDS: -2.47 Total: 0.34 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.52 Total: -1.75 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.01 -10.35 -37.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024693136.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.095 kcal (2) G-P(sol) polarization free energy of solvation -27.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds