Wall clock time and date at job start Tue Mar 31 2020 15:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00106 * 2 1 4 4 H 1.48500 * 109.47232 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47034 * 120.00061 * 3 2 1 6 6 H 1.48499 * 109.47122 * 239.99964 * 3 2 1 7 7 C 1.38812 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99789 * 167.45578 * 7 2 1 9 9 N 1.36940 * 119.99929 * 347.44882 * 7 2 1 10 10 C 1.46926 * 120.63024 * 328.91235 * 9 7 2 11 11 C 1.53192 * 108.77459 * 233.58701 * 10 9 7 12 12 C 1.53042 * 109.31105 * 305.36623 * 11 10 9 13 13 C 1.53039 * 109.53935 * 61.36584 * 12 11 10 14 14 C 1.46928 * 120.62846 * 148.63387 * 9 7 2 15 15 H 1.08995 * 109.58273 * 246.20188 * 14 9 7 16 16 C 1.53003 * 109.58520 * 6.62625 * 14 9 7 17 17 N 1.46498 * 109.47219 * 299.60755 * 16 14 9 18 18 C 1.34777 * 119.99893 * 180.02562 * 17 16 14 19 19 O 1.21639 * 120.00108 * 359.97438 * 18 17 16 20 20 C 1.47180 * 119.99850 * 179.97438 * 18 17 16 21 21 C 1.35969 * 123.45626 * 359.70108 * 20 18 17 22 22 S 1.70453 * 110.84407 * 179.86023 * 21 20 18 23 23 C 1.75503 * 92.45405 * 0.34866 * 22 21 20 24 24 Cl 1.73605 * 124.71776 * 179.82678 * 23 22 21 25 25 C 1.32892 * 110.56366 * 359.80193 * 23 22 21 26 26 H 0.97005 * 120.00141 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.58509 * 353.37123 * 10 9 7 28 28 H 1.08998 * 109.58409 * 113.65630 * 10 9 7 29 29 H 1.08996 * 109.49746 * 65.31513 * 11 10 9 30 30 H 1.09001 * 109.49398 * 185.38584 * 11 10 9 31 31 H 1.08999 * 109.45905 * 181.38619 * 12 11 10 32 32 H 1.09006 * 109.46201 * 301.35940 * 12 11 10 33 33 H 1.09000 * 109.49728 * 58.58408 * 13 12 11 34 34 H 1.09004 * 109.49603 * 178.65227 * 13 12 11 35 35 H 1.09000 * 109.47267 * 59.60671 * 16 14 9 36 36 H 1.09005 * 109.46599 * 179.60710 * 16 14 9 37 37 H 0.96998 * 120.00067 * 359.97438 * 17 16 14 38 38 H 1.07998 * 124.57997 * 359.97005 * 21 20 18 39 39 H 1.08000 * 123.47624 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1039 1.6963 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0709 -1.2132 -0.2037 9 7 1.3499 -2.3740 0.2567 10 6 0.1855 -2.3962 1.1524 11 6 0.4202 -3.4489 2.2402 12 6 0.7332 -4.7950 1.5827 13 6 2.0090 -4.6718 0.7465 14 6 1.7889 -3.6320 -0.3627 15 1 1.0231 -3.9862 -1.0527 16 6 3.0985 -3.4014 -1.1195 17 7 2.8871 -2.3997 -2.1673 18 6 3.9090 -2.0349 -2.9669 19 8 5.0068 -2.5371 -2.8182 20 6 3.6964 -1.0288 -4.0199 21 6 2.4991 -0.4276 -4.2516 22 16 2.6172 0.6831 -5.5392 23 6 4.3182 0.3297 -5.7875 24 17 5.3152 1.0705 -7.0004 25 6 4.7371 -0.5834 -4.9175 26 1 -0.4850 0.8401 0.0004 27 1 0.0602 -1.4163 1.6131 28 1 -0.7088 -2.6492 0.5828 29 1 1.2600 -3.1453 2.8651 30 1 -0.4753 -3.5431 2.8546 31 1 0.8764 -5.5514 2.3543 32 1 -0.0964 -5.0861 0.9383 33 1 2.8338 -4.3566 1.3856 34 1 2.2445 -5.6369 0.2979 35 1 3.8612 -3.0467 -0.4263 36 1 3.4260 -4.3374 -1.5723 37 1 2.0116 -1.9994 -2.2862 38 1 1.5957 -0.6256 -3.6939 39 1 5.7510 -0.9539 -4.8847 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024693136.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:32 Heat of formation + Delta-G solvation = -8.054315 kcal Electronic energy + Delta-G solvation = -23985.762498 eV Core-core repulsion = 20466.639871 eV Total energy + Delta-G solvation = -3519.122627 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.99913 -39.41879 -38.32287 -37.33132 -35.74789 -34.88818 -32.55299 -31.68101 -30.55346 -27.75100 -26.78108 -25.50530 -23.79650 -22.68894 -22.07016 -20.80172 -20.27874 -19.44351 -18.38849 -17.85909 -17.34010 -16.63115 -16.15728 -15.97818 -15.69588 -15.45330 -14.86968 -14.73022 -14.63641 -14.59213 -14.45270 -14.04305 -13.76948 -13.58513 -13.42706 -12.86355 -12.80950 -12.69286 -12.59085 -12.55153 -12.32441 -12.03371 -11.84132 -11.79375 -11.52066 -11.19722 -11.08571 -10.86529 -10.51036 -10.01015 -9.91258 -9.47885 -8.54396 -7.81939 -5.29391 -0.43454 -0.04064 0.64705 0.74515 1.06609 1.40789 1.46001 1.50081 2.27259 2.43229 2.49913 3.32990 3.59385 3.81695 3.97670 4.02174 4.17009 4.23667 4.28021 4.44444 4.50190 4.56459 4.66296 4.71383 4.78033 4.88336 4.99108 5.01390 5.15699 5.23798 5.29684 5.38435 5.48060 5.59698 5.66158 5.76300 5.86474 6.45639 6.66782 7.20873 7.27447 7.89493 8.42914 9.21602 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015739 B = 0.004108 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.649171 B = 6814.552109 C = 7877.859203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.025 4.025 3 Si 0.926 3.074 4 H -0.291 1.291 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.236 4.236 8 H 0.058 0.942 9 N -0.601 5.601 10 C 0.178 3.822 11 C -0.136 4.136 12 C -0.102 4.102 13 C -0.122 4.122 14 C 0.160 3.840 15 H 0.036 0.964 16 C 0.139 3.861 17 N -0.686 5.686 18 C 0.568 3.432 19 O -0.589 6.589 20 C -0.166 4.166 21 C -0.200 4.200 22 S 0.292 5.708 23 C -0.181 4.181 24 Cl -0.001 7.001 25 C -0.079 4.079 26 H 0.249 0.751 27 H 0.051 0.949 28 H 0.003 0.997 29 H 0.043 0.957 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.046 0.954 36 H 0.076 0.924 37 H 0.412 0.588 38 H 0.183 0.817 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.021 -2.918 -9.426 10.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.222 4.222 3 Si 0.756 3.244 4 H -0.217 1.217 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.366 4.366 8 H 0.076 0.924 9 N -0.326 5.326 10 C 0.052 3.948 11 C -0.175 4.175 12 C -0.140 4.140 13 C -0.162 4.162 14 C 0.054 3.946 15 H 0.054 0.946 16 C 0.015 3.985 17 N -0.335 5.335 18 C 0.354 3.646 19 O -0.473 6.473 20 C -0.184 4.184 21 C -0.339 4.339 22 S 0.556 5.444 23 C -0.324 4.324 24 Cl 0.027 6.973 25 C -0.110 4.110 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.021 0.979 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.249 0.751 38 H 0.200 0.800 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.723 -2.099 -10.130 10.488 hybrid contribution 1.072 0.519 0.985 1.546 sum 2.796 -1.579 -9.145 9.692 Atomic orbital electron populations 1.70075 1.05728 1.25400 1.55512 1.25384 0.95533 0.99498 1.01754 0.85984 0.78167 0.82140 0.78103 1.21726 1.22063 1.20267 1.19143 0.91162 0.84739 1.41576 0.92394 1.44267 1.33987 1.03099 1.51253 1.20594 0.87600 0.96949 0.89622 1.22060 1.00355 0.96730 0.98390 1.21345 0.97253 0.96481 0.98923 1.21969 0.98154 0.98585 0.97462 1.20983 0.92846 0.87700 0.93067 0.94621 1.21307 0.97752 0.90724 0.88730 1.45868 1.13320 1.41999 1.32282 1.17763 0.84079 0.81434 0.81293 1.90702 1.25485 1.57817 1.73300 1.19997 0.93786 1.03461 1.01112 1.26075 1.02472 1.01659 1.03685 1.82850 0.99959 1.36482 1.25119 1.25175 0.99158 1.06119 1.01933 1.98361 1.66890 1.80526 1.51474 1.21087 1.00713 0.96155 0.93054 0.94133 0.93059 0.97882 0.93785 0.91807 0.90863 0.92315 0.92881 0.89966 0.93522 0.90570 0.75067 0.79965 0.82385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.75 11.14 21.65 0.24 -48.51 16 2 C -0.02 -1.26 5.00 84.86 0.42 -0.84 16 3 Si 0.93 42.72 29.57 68.60 2.03 44.75 16 4 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.24 -11.49 6.98 84.03 0.59 -10.90 16 8 H 0.06 2.96 5.87 -2.91 -0.02 2.94 16 9 N -0.60 -26.50 2.97 -674.41 -2.00 -28.51 16 10 C 0.18 7.79 5.26 86.36 0.45 8.24 16 11 C -0.14 -4.72 6.08 30.67 0.19 -4.54 16 12 C -0.10 -2.95 5.88 30.62 0.18 -2.77 16 13 C -0.12 -3.68 5.40 30.82 0.17 -3.51 16 14 C 0.16 5.78 3.03 45.12 0.14 5.92 16 15 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 16 C 0.14 5.06 4.44 86.38 0.38 5.44 16 17 N -0.69 -25.87 3.82 -466.59 -1.78 -27.65 16 18 C 0.57 22.04 7.79 86.59 0.67 22.72 16 19 O -0.59 -25.87 16.80 -4.15 -0.07 -25.94 16 20 C -0.17 -5.54 5.98 -19.87 -0.12 -5.66 16 21 C -0.20 -5.83 10.38 67.29 0.70 -5.14 16 22 S 0.29 6.75 23.02 -56.49 -1.30 5.45 16 23 C -0.18 -4.60 7.01 66.64 0.47 -4.13 16 24 Cl 0.00 -0.02 29.27 -2.72 -0.08 -0.10 16 25 C -0.08 -2.36 10.04 22.68 0.23 -2.13 16 26 H 0.25 13.08 8.31 -92.70 -0.77 12.31 16 27 H 0.05 2.60 6.15 -2.39 -0.01 2.58 16 28 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.05 1.90 7.41 -2.39 -0.02 1.89 16 36 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 37 H 0.41 15.81 5.90 -92.71 -0.55 15.27 16 38 H 0.18 5.34 7.01 -2.91 -0.02 5.32 16 39 H 0.16 4.65 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -58.26 343.15 2.04 -56.22 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.53 Total: 21.57 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 4.47 Total: 2.71 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -3.54 Total: -104.66 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.07 Total: -25.94 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 16 Polarization: 6.75 SS G_CDS: -1.30 Total: 5.45 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -0.08 Total: -0.10 kcal Total: -58.26 2.04 -56.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024693136.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.169 kcal (2) G-P(sol) polarization free energy of solvation -58.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds