Wall clock time and date at job start Tue Mar 31 2020 15:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 120.00128 * 2 1 4 4 H 1.48502 * 109.47014 * 91.13798 * 3 2 1 5 5 H 1.48497 * 109.46685 * 211.13695 * 3 2 1 6 6 H 1.48503 * 109.46919 * 331.13328 * 3 2 1 7 7 C 1.38807 * 119.99663 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00497 * 16.92817 * 7 2 1 9 9 N 1.36940 * 120.00041 * 196.93198 * 7 2 1 10 10 C 1.46927 * 120.63349 * 31.19652 * 9 7 2 11 11 C 1.53185 * 108.77827 * 126.37047 * 10 9 7 12 12 C 1.53039 * 109.30967 * 54.63536 * 11 10 9 13 13 C 1.53044 * 109.54277 * 298.63710 * 12 11 10 14 14 C 1.46926 * 120.63037 * 210.92428 * 9 7 2 15 15 H 1.09001 * 109.59080 * 113.83889 * 14 9 7 16 16 C 1.53001 * 109.58502 * 353.41031 * 14 9 7 17 17 N 1.46499 * 109.47054 * 60.26216 * 16 14 9 18 18 C 1.34773 * 120.00183 * 179.97438 * 17 16 14 19 19 O 1.21644 * 120.00040 * 0.02562 * 18 17 16 20 20 C 1.47180 * 120.00224 * 179.97438 * 18 17 16 21 21 C 1.35964 * 123.45610 * 359.70467 * 20 18 17 22 22 S 1.70447 * 110.84686 * 179.86128 * 21 20 18 23 23 C 1.75505 * 92.45512 * 0.34395 * 22 21 20 24 24 Cl 1.73594 * 124.71874 * 179.82252 * 23 22 21 25 25 C 1.32886 * 110.55941 * 359.80895 * 23 22 21 26 26 H 0.97008 * 119.99613 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.58665 * 246.16675 * 10 9 7 28 28 H 1.09001 * 109.58436 * 6.43848 * 10 9 7 29 29 H 1.08997 * 109.49937 * 174.58999 * 11 10 9 30 30 H 1.09004 * 109.50025 * 294.69087 * 11 10 9 31 31 H 1.09006 * 109.45902 * 58.65926 * 12 11 10 32 32 H 1.09010 * 109.46067 * 178.62805 * 12 11 10 33 33 H 1.08993 * 109.49714 * 181.32016 * 13 12 11 34 34 H 1.09004 * 109.49451 * 301.38167 * 13 12 11 35 35 H 1.08998 * 109.46867 * 180.26117 * 16 14 9 36 36 H 1.08999 * 109.47450 * 300.26059 * 16 14 9 37 37 H 0.97001 * 119.99930 * 0.02562 * 17 16 14 38 38 H 1.07998 * 124.57774 * 359.96757 * 21 20 18 39 39 H 1.07998 * 123.47458 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.5219 2.0325 1.3998 5 1 3.5356 1.4471 -0.7240 6 1 1.4359 2.6595 -0.6759 7 6 2.0102 -1.2021 0.0005 8 1 1.5053 -2.1173 -0.2714 9 7 3.3351 -1.2278 0.3459 10 6 3.8740 -0.2671 1.3183 11 6 4.5945 -1.0398 2.4275 12 6 5.6466 -1.9590 1.8028 13 6 4.9610 -2.9677 0.8783 14 6 4.2435 -2.2203 -0.2443 15 1 4.9784 -1.7158 -0.8715 16 6 3.4405 -3.2131 -1.0872 17 7 2.7487 -2.4949 -2.1604 18 6 1.9761 -3.1702 -3.0342 19 8 1.8528 -4.3760 -2.9314 20 6 1.2806 -2.4486 -4.1120 21 6 1.3632 -1.1029 -4.2879 22 16 0.4369 -0.6087 -5.6307 23 6 -0.0891 -2.2489 -5.9670 24 17 -1.1467 -2.7011 -7.2672 25 6 0.4351 -3.0966 -5.0880 26 1 -0.4850 0.8401 -0.0004 27 1 4.5780 0.4001 0.8210 28 1 3.0585 0.3158 1.7464 29 1 5.0809 -0.3368 3.1037 30 1 3.8719 -1.6384 2.9823 31 1 6.3546 -1.3622 1.2277 32 1 6.1775 -2.4921 2.5916 33 1 5.7083 -3.6368 0.4520 34 1 4.2354 -3.5484 1.4479 35 1 4.1156 -3.9512 -1.5204 36 1 2.7082 -3.7167 -0.4562 37 1 2.8473 -1.5334 -2.2426 38 1 1.9393 -0.4372 -3.6624 39 1 0.2481 -4.1602 -5.1015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024693137.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:36 Heat of formation + Delta-G solvation = 12.443947 kcal Electronic energy + Delta-G solvation = -24003.664822 eV Core-core repulsion = 20485.431066 eV Total energy + Delta-G solvation = -3518.233756 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -39.54438 -38.19040 -37.13440 -36.12002 -34.31904 -33.11262 -31.21045 -30.77950 -29.32837 -26.31451 -25.12366 -24.06463 -22.74115 -21.36755 -20.62450 -19.59552 -18.86751 -18.16397 -16.89986 -16.39748 -15.74922 -15.19200 -15.03648 -14.63573 -14.25020 -13.78849 -13.76440 -13.46525 -13.39621 -13.28733 -13.23273 -12.58768 -12.48403 -12.18185 -12.06444 -11.70105 -11.53067 -11.49349 -11.30702 -10.89374 -10.76300 -10.69845 -10.49109 -10.24678 -10.01187 -9.67479 -9.54883 -9.36411 -8.80640 -8.76439 -8.46978 -8.19340 -7.01120 -6.03516 -3.45750 0.80872 1.09823 1.83911 2.06275 2.20128 3.20200 3.34578 3.37651 3.71922 3.91616 4.40025 4.74533 5.02222 5.17056 5.27401 5.33466 5.38590 5.41811 5.48002 5.70320 5.73225 5.82447 5.92383 5.96110 6.06586 6.13672 6.16924 6.26145 6.34132 6.38768 6.43008 6.52454 6.64591 6.70565 6.93233 7.08913 7.87514 8.17614 8.27855 8.79954 8.83820 9.60422 9.99367 11.10614 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.016600 B = 0.004045 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.357774 B = 6920.421463 C = 8054.141552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.029 3.971 3 Si 0.876 3.124 4 H -0.287 1.287 5 H -0.272 1.272 6 H -0.304 1.304 7 C -0.265 4.265 8 H 0.094 0.906 9 N -0.605 5.605 10 C 0.124 3.876 11 C -0.136 4.136 12 C -0.108 4.108 13 C -0.129 4.129 14 C 0.163 3.837 15 H 0.037 0.963 16 C 0.136 3.864 17 N -0.686 5.686 18 C 0.575 3.425 19 O -0.557 6.557 20 C -0.137 4.137 21 C -0.190 4.190 22 S 0.222 5.778 23 C -0.178 4.178 24 Cl -0.020 7.020 25 C -0.064 4.064 26 H 0.263 0.737 27 H 0.023 0.977 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.409 0.591 38 H 0.179 0.821 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.879 -1.086 -8.548 10.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.171 4.171 3 Si 0.706 3.294 4 H -0.214 1.214 5 H -0.197 1.197 6 H -0.232 1.232 7 C -0.393 4.393 8 H 0.112 0.888 9 N -0.330 5.330 10 C -0.001 4.001 11 C -0.175 4.175 12 C -0.146 4.146 13 C -0.169 4.169 14 C 0.057 3.943 15 H 0.054 0.946 16 C 0.012 3.988 17 N -0.335 5.335 18 C 0.360 3.640 19 O -0.438 6.438 20 C -0.154 4.154 21 C -0.329 4.329 22 S 0.486 5.514 23 C -0.321 4.321 24 Cl 0.008 6.992 25 C -0.095 4.095 26 H 0.073 0.927 27 H 0.041 0.959 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.246 0.754 38 H 0.197 0.803 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 5.257 -0.486 -9.278 10.675 hybrid contribution 0.559 0.216 0.888 1.071 sum 5.816 -0.270 -8.390 10.212 Atomic orbital electron populations 1.69816 1.05589 1.26477 1.52343 1.25343 0.95099 0.97230 0.99382 0.87102 0.79594 0.85072 0.77636 1.21412 1.19671 1.23241 1.19020 0.83286 0.94634 1.42360 0.88841 1.44422 1.06515 1.36107 1.45958 1.21391 0.96810 0.92045 0.89819 1.22003 0.98103 0.98832 0.98582 1.21369 0.97484 0.97447 0.98286 1.21865 0.99274 0.97820 0.97908 1.20663 0.91458 0.89910 0.92276 0.94587 1.21299 0.95365 0.93915 0.88232 1.45760 1.47350 1.12021 1.28417 1.17350 0.79022 0.86499 0.81142 1.90737 1.64161 1.14069 1.74836 1.20072 1.03480 0.92348 0.99490 1.25824 1.04836 0.99352 1.02894 1.83017 1.41954 1.04007 1.22434 1.24987 1.07420 0.99198 1.00460 1.98349 1.63241 1.91861 1.45754 1.21120 0.95168 1.01292 0.91943 0.92693 0.95875 0.90953 0.93062 0.91781 0.92760 0.93016 0.92448 0.91563 0.92175 0.90999 0.75358 0.80330 0.82228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.58 13.97 55.49 0.78 -24.80 16 2 C 0.03 0.76 5.27 -17.43 -0.09 0.67 16 3 Si 0.88 20.30 24.32 -169.99 -4.13 16.17 16 4 H -0.29 -6.63 6.52 56.52 0.37 -6.26 16 5 H -0.27 -6.04 6.74 56.52 0.38 -5.66 16 6 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.26 -6.51 7.44 -15.06 -0.11 -6.62 16 8 H 0.09 2.56 6.04 -52.49 -0.32 2.25 16 9 N -0.60 -12.69 2.72 -165.03 -0.45 -13.14 16 10 C 0.12 2.49 4.20 -3.71 -0.02 2.47 16 11 C -0.14 -2.25 6.08 -26.62 -0.16 -2.41 16 12 C -0.11 -1.55 5.88 -26.69 -0.16 -1.71 16 13 C -0.13 -1.94 5.35 -26.83 -0.14 -2.09 16 14 C 0.16 2.86 2.99 -67.82 -0.20 2.66 16 15 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 16 C 0.14 2.45 4.42 -4.04 -0.02 2.43 16 17 N -0.69 -12.83 3.81 -61.46 -0.23 -13.06 16 18 C 0.58 11.22 7.79 -12.63 -0.10 11.12 16 19 O -0.56 -12.26 16.80 5.24 0.09 -12.17 16 20 C -0.14 -2.34 5.98 -104.63 -0.63 -2.96 16 21 C -0.19 -2.91 10.38 29.92 0.31 -2.60 16 22 S 0.22 2.86 23.02 -107.50 -2.47 0.38 16 23 C -0.18 -2.47 7.01 28.89 0.20 -2.26 16 24 Cl -0.02 -0.25 29.27 -51.86 -1.52 -1.76 16 25 C -0.06 -0.99 10.04 -38.98 -0.39 -1.38 16 26 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.02 0.46 7.05 -51.93 -0.37 0.09 16 28 H 0.07 1.61 4.64 -51.93 -0.24 1.37 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.47 7.42 -51.93 -0.39 1.08 16 37 H 0.41 7.61 5.89 -40.82 -0.24 7.37 16 38 H 0.18 2.64 7.01 -52.49 -0.37 2.27 16 39 H 0.16 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 336.64 15.07 5.07 5.07 Total: -1.00 -28.95 336.64 -9.29 -38.24 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -4.91 Total: 7.76 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -1.50 Total: -2.68 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.09 Total: -51.00 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.09 Total: -12.17 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.13 Total: 16.17 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -2.47 Total: 0.38 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.52 Total: -1.76 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.95 -9.29 -38.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024693137.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.679 kcal (2) G-P(sol) polarization free energy of solvation -28.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds