Wall clock time and date at job start Tue Mar 31 2020 15:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 120.00128 * 2 1 4 4 H 1.48502 * 109.47014 * 91.13798 * 3 2 1 5 5 H 1.48497 * 109.46685 * 211.13695 * 3 2 1 6 6 H 1.48503 * 109.46919 * 331.13328 * 3 2 1 7 7 C 1.38807 * 119.99663 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00497 * 16.92817 * 7 2 1 9 9 N 1.36940 * 120.00041 * 196.93198 * 7 2 1 10 10 C 1.46927 * 120.63349 * 31.19652 * 9 7 2 11 11 C 1.53185 * 108.77827 * 126.37047 * 10 9 7 12 12 C 1.53039 * 109.30967 * 54.63536 * 11 10 9 13 13 C 1.53044 * 109.54277 * 298.63710 * 12 11 10 14 14 C 1.46926 * 120.63037 * 210.92428 * 9 7 2 15 15 H 1.09001 * 109.59080 * 113.83889 * 14 9 7 16 16 C 1.53001 * 109.58502 * 353.41031 * 14 9 7 17 17 N 1.46499 * 109.47054 * 60.26216 * 16 14 9 18 18 C 1.34773 * 120.00183 * 179.97438 * 17 16 14 19 19 O 1.21644 * 120.00040 * 0.02562 * 18 17 16 20 20 C 1.47180 * 120.00224 * 179.97438 * 18 17 16 21 21 C 1.35964 * 123.45610 * 359.70467 * 20 18 17 22 22 S 1.70447 * 110.84686 * 179.86128 * 21 20 18 23 23 C 1.75505 * 92.45512 * 0.34395 * 22 21 20 24 24 Cl 1.73594 * 124.71874 * 179.82252 * 23 22 21 25 25 C 1.32886 * 110.55941 * 359.80895 * 23 22 21 26 26 H 0.97008 * 119.99613 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.58665 * 246.16675 * 10 9 7 28 28 H 1.09001 * 109.58436 * 6.43848 * 10 9 7 29 29 H 1.08997 * 109.49937 * 174.58999 * 11 10 9 30 30 H 1.09004 * 109.50025 * 294.69087 * 11 10 9 31 31 H 1.09006 * 109.45902 * 58.65926 * 12 11 10 32 32 H 1.09010 * 109.46067 * 178.62805 * 12 11 10 33 33 H 1.08993 * 109.49714 * 181.32016 * 13 12 11 34 34 H 1.09004 * 109.49451 * 301.38167 * 13 12 11 35 35 H 1.08998 * 109.46867 * 180.26117 * 16 14 9 36 36 H 1.08999 * 109.47450 * 300.26059 * 16 14 9 37 37 H 0.97001 * 119.99930 * 0.02562 * 17 16 14 38 38 H 1.07998 * 124.57774 * 359.96757 * 21 20 18 39 39 H 1.07998 * 123.47458 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.5219 2.0325 1.3998 5 1 3.5356 1.4471 -0.7240 6 1 1.4359 2.6595 -0.6759 7 6 2.0102 -1.2021 0.0005 8 1 1.5053 -2.1173 -0.2714 9 7 3.3351 -1.2278 0.3459 10 6 3.8740 -0.2671 1.3183 11 6 4.5945 -1.0398 2.4275 12 6 5.6466 -1.9590 1.8028 13 6 4.9610 -2.9677 0.8783 14 6 4.2435 -2.2203 -0.2443 15 1 4.9784 -1.7158 -0.8715 16 6 3.4405 -3.2131 -1.0872 17 7 2.7487 -2.4949 -2.1604 18 6 1.9761 -3.1702 -3.0342 19 8 1.8528 -4.3760 -2.9314 20 6 1.2806 -2.4486 -4.1120 21 6 1.3632 -1.1029 -4.2879 22 16 0.4369 -0.6087 -5.6307 23 6 -0.0891 -2.2489 -5.9670 24 17 -1.1467 -2.7011 -7.2672 25 6 0.4351 -3.0966 -5.0880 26 1 -0.4850 0.8401 -0.0004 27 1 4.5780 0.4001 0.8210 28 1 3.0585 0.3158 1.7464 29 1 5.0809 -0.3368 3.1037 30 1 3.8719 -1.6384 2.9823 31 1 6.3546 -1.3622 1.2277 32 1 6.1775 -2.4921 2.5916 33 1 5.7083 -3.6368 0.4520 34 1 4.2354 -3.5484 1.4479 35 1 4.1156 -3.9512 -1.5204 36 1 2.7082 -3.7167 -0.4562 37 1 2.8473 -1.5334 -2.2426 38 1 1.9393 -0.4372 -3.6624 39 1 0.2481 -4.1602 -5.1015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024693137.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:36 Heat of formation + Delta-G solvation = -4.996456 kcal Electronic energy + Delta-G solvation = -24004.421094 eV Core-core repulsion = 20485.431066 eV Total energy + Delta-G solvation = -3518.990029 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.02590 -39.63656 -38.31684 -37.31528 -35.81788 -34.86465 -32.69414 -32.45210 -30.57516 -27.81570 -26.68277 -25.45316 -24.30128 -22.71004 -22.05931 -21.02053 -20.27245 -19.42798 -18.45146 -17.94130 -17.37980 -16.70607 -16.63105 -15.91167 -15.72375 -15.27878 -15.18820 -14.79807 -14.69327 -14.61782 -14.58482 -14.26510 -13.76939 -13.71187 -13.58114 -13.20928 -12.94400 -12.68136 -12.58810 -12.51213 -12.28313 -11.94355 -11.82678 -11.68109 -11.54605 -11.27007 -11.19667 -10.89646 -10.61241 -10.00000 -9.90407 -9.44780 -8.77718 -8.04834 -5.42929 -0.40805 -0.01493 0.66584 0.76951 1.08829 1.35563 1.43995 1.53425 2.25724 2.47250 2.48382 3.10435 3.33549 3.81121 3.91286 4.00245 4.08712 4.18917 4.19773 4.32753 4.43836 4.52227 4.53359 4.63904 4.71655 4.75926 4.88200 4.95300 5.00831 5.07217 5.17284 5.25699 5.31831 5.32324 5.57026 5.64648 5.97932 6.28740 6.65623 6.98129 7.28405 7.69611 8.10887 9.13304 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.016600 B = 0.004045 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.357774 B = 6920.421463 C = 8054.141552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.023 4.023 3 Si 0.934 3.066 4 H -0.287 1.287 5 H -0.251 1.251 6 H -0.316 1.316 7 C -0.232 4.232 8 H 0.057 0.943 9 N -0.616 5.616 10 C 0.118 3.882 11 C -0.132 4.132 12 C -0.103 4.103 13 C -0.125 4.125 14 C 0.163 3.837 15 H 0.056 0.944 16 C 0.138 3.862 17 N -0.685 5.685 18 C 0.570 3.430 19 O -0.592 6.592 20 C -0.164 4.164 21 C -0.199 4.199 22 S 0.295 5.705 23 C -0.180 4.180 24 Cl -0.001 7.001 25 C -0.080 4.080 26 H 0.258 0.742 27 H 0.036 0.964 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.046 0.954 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.081 0.919 36 H 0.038 0.962 37 H 0.409 0.591 38 H 0.182 0.818 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.357 -0.053 -9.197 12.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.218 4.218 3 Si 0.764 3.236 4 H -0.214 1.214 5 H -0.175 1.175 6 H -0.246 1.246 7 C -0.362 4.362 8 H 0.074 0.926 9 N -0.343 5.343 10 C -0.007 4.007 11 C -0.171 4.171 12 C -0.140 4.140 13 C -0.165 4.165 14 C 0.058 3.942 15 H 0.074 0.926 16 C 0.014 3.986 17 N -0.333 5.333 18 C 0.356 3.644 19 O -0.475 6.475 20 C -0.182 4.182 21 C -0.338 4.338 22 S 0.559 5.441 23 C -0.323 4.323 24 Cl 0.027 6.973 25 C -0.111 4.111 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.057 0.943 37 H 0.247 0.753 38 H 0.199 0.801 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 7.799 0.546 -9.922 12.632 hybrid contribution -0.238 -0.157 1.057 1.095 sum 7.561 0.388 -8.865 11.658 Atomic orbital electron populations 1.69966 1.07408 1.26743 1.55791 1.25825 0.95428 1.00189 1.00355 0.86140 0.78909 0.81022 0.77518 1.21405 1.17478 1.24551 1.18749 0.84756 0.92964 1.39733 0.92586 1.44544 1.05734 1.37103 1.46874 1.21451 0.96358 0.92206 0.90650 1.21939 0.98296 0.99218 0.97632 1.21368 0.96849 0.96979 0.98838 1.21843 0.99459 0.98141 0.97027 1.20878 0.90979 0.89154 0.93231 0.92601 1.21325 0.94870 0.94489 0.87927 1.45770 1.47254 1.11975 1.28330 1.17769 0.78735 0.86302 0.81602 1.90696 1.65397 1.15506 1.75948 1.19962 1.05102 0.93150 0.99956 1.26007 1.04995 0.98832 1.03943 1.82764 1.39540 1.02096 1.19708 1.25148 1.06918 0.99885 1.00334 1.98357 1.62482 1.91862 1.44594 1.21068 0.95994 1.01522 0.92543 0.93308 0.94627 0.93731 0.90652 0.93475 0.91262 0.90397 0.89311 0.93229 0.90094 0.94330 0.75335 0.80103 0.82621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.19 13.97 21.65 0.30 -55.89 16 2 C -0.02 -1.21 5.27 84.86 0.45 -0.76 16 3 Si 0.93 42.10 24.32 68.60 1.67 43.77 16 4 H -0.29 -12.80 6.52 99.48 0.65 -12.15 16 5 H -0.25 -10.30 6.74 99.48 0.67 -9.63 16 6 H -0.32 -14.77 7.11 99.48 0.71 -14.06 16 7 C -0.23 -11.67 7.44 84.03 0.63 -11.05 16 8 H 0.06 3.24 6.04 -2.91 -0.02 3.22 16 9 N -0.62 -25.39 2.72 -676.04 -1.84 -27.23 16 10 C 0.12 4.48 4.20 86.36 0.36 4.85 16 11 C -0.13 -3.99 6.08 30.67 0.19 -3.81 16 12 C -0.10 -2.53 5.88 30.62 0.18 -2.35 16 13 C -0.13 -3.42 5.35 30.53 0.16 -3.26 16 14 C 0.16 5.41 2.99 44.83 0.13 5.55 16 15 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 16 C 0.14 4.98 4.42 86.38 0.38 5.36 16 17 N -0.68 -26.12 3.81 -466.61 -1.78 -27.90 16 18 C 0.57 23.06 7.79 86.59 0.67 23.74 16 19 O -0.59 -27.21 16.80 -4.17 -0.07 -27.28 16 20 C -0.16 -5.74 5.98 -19.87 -0.12 -5.86 16 21 C -0.20 -6.00 10.38 67.29 0.70 -5.30 16 22 S 0.29 7.08 23.02 -56.49 -1.30 5.78 16 23 C -0.18 -4.81 7.01 66.64 0.47 -4.34 16 24 Cl 0.00 -0.03 29.27 -2.72 -0.08 -0.11 16 25 C -0.08 -2.53 10.04 22.68 0.23 -2.30 16 26 H 0.26 14.68 8.31 -92.70 -0.77 13.91 16 27 H 0.04 1.28 7.05 -2.39 -0.02 1.27 16 28 H 0.04 1.94 4.64 -2.39 -0.01 1.93 16 29 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.04 1.65 7.42 -2.39 -0.02 1.63 16 37 H 0.41 15.33 5.89 -92.71 -0.55 14.79 16 38 H 0.18 5.28 7.01 -2.91 -0.02 5.26 16 39 H 0.16 4.89 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -64.94 336.64 1.78 -63.17 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.45 Total: 25.23 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 4.43 Total: 0.47 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -3.32 Total: -111.02 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.07 Total: -27.28 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.67 Total: 43.77 kcal Atomic # 16 Polarization: 7.08 SS G_CDS: -1.30 Total: 5.78 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -0.08 Total: -0.11 kcal Total: -64.94 1.78 -63.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024693137.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.169 kcal (2) G-P(sol) polarization free energy of solvation -64.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds