Wall clock time and date at job start Tue Mar 31 2020 15:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 120.00006 * 2 1 4 4 H 1.48491 * 109.47099 * 269.99834 * 3 2 1 5 5 H 1.48490 * 109.47031 * 30.00089 * 3 2 1 6 6 H 1.48498 * 109.46791 * 149.99767 * 3 2 1 7 7 C 1.38808 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00438 * 162.80125 * 7 2 1 9 9 N 1.36942 * 120.00044 * 342.79159 * 7 2 1 10 10 C 1.46924 * 120.63273 * 328.65938 * 9 7 2 11 11 C 1.53191 * 108.77439 * 233.58551 * 10 9 7 12 12 C 1.53043 * 109.31037 * 305.36108 * 11 10 9 13 13 C 1.53043 * 109.53954 * 61.36693 * 12 11 10 14 14 C 1.46929 * 120.62740 * 148.62854 * 9 7 2 15 15 H 1.08997 * 109.70615 * 246.26895 * 14 9 7 16 16 C 1.52996 * 109.58964 * 6.63194 * 14 9 7 17 17 N 1.46497 * 109.47008 * 299.88591 * 16 14 9 18 18 C 1.34782 * 120.00065 * 180.02562 * 17 16 14 19 19 O 1.21713 * 119.99732 * 0.02562 * 18 17 16 20 20 C 1.46464 * 119.99961 * 179.72263 * 18 17 16 21 21 C 1.36692 * 125.45044 * 179.97438 * 20 18 17 22 22 C 1.37399 * 113.32022 * 179.84328 * 21 20 18 23 23 C 1.34015 * 115.07082 * 0.45106 * 22 21 20 24 24 Cl 1.73604 * 124.53283 * 179.75523 * 23 22 21 25 25 S 1.70617 * 110.93839 * 359.75006 * 23 22 21 26 26 H 0.97003 * 119.99921 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.59104 * 113.79191 * 10 9 7 28 28 H 1.09006 * 109.70155 * 353.43627 * 10 9 7 29 29 H 1.08999 * 109.50228 * 185.40745 * 11 10 9 30 30 H 1.09008 * 109.50050 * 65.31001 * 11 10 9 31 31 H 1.08996 * 109.46129 * 301.34379 * 12 11 10 32 32 H 1.08999 * 109.44996 * 181.37594 * 12 11 10 33 33 H 1.08995 * 109.49936 * 178.68233 * 13 12 11 34 34 H 1.09005 * 109.52364 * 58.60007 * 13 12 11 35 35 H 1.09001 * 109.47088 * 179.88827 * 16 14 9 36 36 H 1.09000 * 109.47510 * 59.88549 * 16 14 9 37 37 H 0.97005 * 120.00545 * 359.97438 * 17 16 14 38 38 H 1.08008 * 123.33869 * 0.02562 * 21 20 18 39 39 H 1.07994 * 122.46926 * 180.20825 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0540 -1.2230 -0.2771 9 7 1.3715 -2.3617 0.3498 10 6 0.2766 -2.3467 1.3294 11 6 0.5918 -3.3574 2.4366 12 6 0.8559 -4.7285 1.8100 13 6 2.0661 -4.6406 0.8774 14 6 1.7677 -3.6443 -0.2474 15 1 0.9575 -4.0265 -0.8684 16 6 3.0204 -3.4466 -1.1032 17 7 2.7363 -2.4828 -2.1692 18 6 3.6992 -2.1513 -3.0522 19 8 4.8046 -2.6530 -2.9640 20 6 3.4135 -1.1923 -4.1217 21 6 4.3029 -0.7775 -5.0731 22 6 3.7691 0.1265 -5.9595 23 6 2.4877 0.4505 -5.7376 24 17 1.5748 1.5701 -6.7004 25 16 1.8735 -0.3846 -4.3825 26 1 -0.4850 0.8401 0.0004 27 1 -0.6568 -2.6217 0.8385 28 1 0.1829 -1.3499 1.7606 29 1 -0.2556 -3.4262 3.1186 30 1 1.4756 -3.0320 2.9855 31 1 -0.0191 -5.0423 1.2409 32 1 1.0564 -5.4549 2.5976 33 1 2.2679 -5.6226 0.4496 34 1 2.9363 -4.3034 1.4407 35 1 3.3137 -4.3995 -1.5436 36 1 3.8309 -3.0699 -0.4793 37 1 1.8550 -2.0837 -2.2402 38 1 5.3232 -1.1280 -5.1249 39 1 4.3411 0.5482 -6.7727 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024788636.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:06 Heat of formation + Delta-G solvation = 7.582140 kcal Electronic energy + Delta-G solvation = -24008.797969 eV Core-core repulsion = 20490.353390 eV Total energy + Delta-G solvation = -3518.444580 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -39.42994 -38.04387 -37.44288 -36.43989 -34.23975 -33.10554 -31.06577 -30.00502 -29.34717 -26.23400 -25.17776 -24.11091 -22.22149 -21.30885 -20.54202 -19.38608 -19.15550 -18.32312 -16.56398 -16.00424 -15.69682 -15.57611 -14.84273 -14.52794 -14.08616 -13.97240 -13.55193 -13.47383 -13.38309 -13.18584 -12.89132 -12.59755 -12.46845 -12.08022 -11.86967 -11.44217 -11.30207 -11.21369 -11.01239 -10.79691 -10.67694 -10.59634 -10.33847 -10.19851 -10.04582 -9.73460 -9.54080 -9.36546 -8.74270 -8.59676 -8.55602 -8.28184 -6.71489 -5.90774 -3.35542 0.49112 1.11880 1.84239 2.17279 2.37858 3.29569 3.38702 3.42884 3.54175 3.71095 4.39425 5.12734 5.17650 5.23907 5.27155 5.36145 5.45351 5.59900 5.64526 5.82846 5.91115 5.97738 6.08074 6.10915 6.23003 6.27182 6.32683 6.36641 6.55348 6.66340 6.68887 6.80264 6.91287 7.03758 7.31234 7.56281 7.74604 8.07924 8.34410 8.65927 9.10197 9.72048 10.30915 11.15798 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.014054 B = 0.004626 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.874379 B = 6051.839794 C = 7060.443025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.015 3.985 3 Si 0.880 3.120 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.258 4.258 8 H 0.068 0.932 9 N -0.587 5.587 10 C 0.175 3.825 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.159 3.841 15 H 0.033 0.967 16 C 0.135 3.865 17 N -0.686 5.686 18 C 0.581 3.419 19 O -0.549 6.549 20 C -0.246 4.246 21 C -0.066 4.066 22 C -0.137 4.137 23 C -0.184 4.184 24 Cl -0.018 7.018 25 S 0.290 5.710 26 H 0.255 0.745 27 H 0.019 0.981 28 H 0.080 0.920 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.413 0.587 38 H 0.158 0.842 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.494 -3.011 -7.847 8.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.185 4.185 3 Si 0.709 3.291 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.388 4.388 8 H 0.086 0.914 9 N -0.312 5.312 10 C 0.049 3.951 11 C -0.183 4.183 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.052 3.948 15 H 0.050 0.950 16 C 0.011 3.989 17 N -0.337 5.337 18 C 0.366 3.634 19 O -0.430 6.430 20 C -0.368 4.368 21 C -0.099 4.099 22 C -0.170 4.170 23 C -0.331 4.331 24 Cl 0.011 6.989 25 S 0.557 5.443 26 H 0.065 0.935 27 H 0.038 0.962 28 H 0.098 0.902 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.252 0.748 38 H 0.176 0.824 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.602 -3.142 -7.117 7.803 hybrid contribution 1.281 1.524 -0.818 2.152 sum 1.883 -1.618 -7.934 8.314 Atomic orbital electron populations 1.70026 1.05096 1.25683 1.52707 1.25001 0.95058 0.97998 1.00430 0.86636 0.79723 0.84423 0.78333 1.20787 1.21353 1.20369 1.19148 0.92941 0.84527 1.42158 0.91402 1.44059 1.40248 1.01452 1.45420 1.20708 0.89154 0.97563 0.87630 1.22188 1.00189 0.96454 0.99497 1.21357 0.97817 0.97343 0.97962 1.21936 0.98495 0.98272 0.97965 1.20743 0.93470 0.88591 0.91959 0.94992 1.21359 0.98679 0.90760 0.88122 1.45946 1.15148 1.44150 1.28425 1.16818 0.84954 0.80884 0.80771 1.90775 1.22649 1.54969 1.74646 1.24959 0.99214 1.08034 1.04587 1.20525 1.00817 0.96015 0.92524 1.19972 0.93421 1.00949 1.02696 1.25135 0.98728 1.05419 1.03799 1.98360 1.72598 1.58875 1.69105 1.83919 1.09826 1.32731 1.17789 0.93483 0.96243 0.90204 0.93510 0.92781 0.92845 0.93670 0.92965 0.92008 0.92242 0.91188 0.74833 0.82410 0.83300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.30 11.46 55.49 0.64 -22.67 16 2 C 0.02 0.39 4.88 -17.43 -0.09 0.30 16 3 Si 0.88 20.67 29.59 -169.99 -5.03 15.64 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.26 -6.27 6.93 -15.06 -0.10 -6.37 16 8 H 0.07 1.71 5.89 -52.49 -0.31 1.40 16 9 N -0.59 -12.99 2.96 -164.78 -0.49 -13.48 16 10 C 0.17 3.80 5.28 -3.71 -0.02 3.78 16 11 C -0.14 -2.58 6.08 -26.61 -0.16 -2.74 16 12 C -0.11 -1.69 5.88 -26.69 -0.16 -1.85 16 13 C -0.13 -2.05 5.37 -26.61 -0.14 -2.19 16 14 C 0.16 2.98 3.01 -67.60 -0.20 2.78 16 15 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 16 C 0.13 2.48 4.43 -4.05 -0.02 2.46 16 17 N -0.69 -13.16 3.84 -61.69 -0.24 -13.40 16 18 C 0.58 11.18 7.78 -12.95 -0.10 11.08 16 19 O -0.55 -11.69 16.84 5.18 0.09 -11.60 16 20 C -0.25 -4.17 6.45 -36.83 -0.24 -4.40 16 21 C -0.07 -0.96 10.01 -40.45 -0.40 -1.37 16 22 C -0.14 -1.79 10.08 -41.37 -0.42 -2.20 16 23 C -0.18 -2.60 6.82 29.25 0.20 -2.40 16 24 Cl -0.02 -0.22 29.27 -51.86 -1.52 -1.74 16 25 S 0.29 4.61 22.15 -107.50 -2.38 2.23 16 26 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 1.96 6.33 -51.93 -0.33 1.63 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.07 1.41 7.43 -51.93 -0.39 1.02 16 37 H 0.41 8.24 6.49 -40.82 -0.26 7.97 16 38 H 0.16 2.10 8.06 -52.48 -0.42 1.67 16 39 H 0.15 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 344.27 15.07 5.19 5.19 Total: -1.00 -26.86 344.27 -10.67 -37.53 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -5.07 Total: 5.44 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -1.85 Total: -3.12 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -0.09 Total: -49.55 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Atomic # 16 Polarization: 4.61 SS G_CDS: -2.38 Total: 2.23 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -1.52 Total: -1.74 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -26.86 -10.67 -37.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024788636.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.109 kcal (2) G-P(sol) polarization free energy of solvation -26.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds