Wall clock time and date at job start Tue Mar 31 2020 15:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 120.00006 * 2 1 4 4 H 1.48491 * 109.47099 * 269.99834 * 3 2 1 5 5 H 1.48490 * 109.47031 * 30.00089 * 3 2 1 6 6 H 1.48498 * 109.46791 * 149.99767 * 3 2 1 7 7 C 1.38808 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00438 * 162.80125 * 7 2 1 9 9 N 1.36942 * 120.00044 * 342.79159 * 7 2 1 10 10 C 1.46924 * 120.63273 * 328.65938 * 9 7 2 11 11 C 1.53191 * 108.77439 * 233.58551 * 10 9 7 12 12 C 1.53043 * 109.31037 * 305.36108 * 11 10 9 13 13 C 1.53043 * 109.53954 * 61.36693 * 12 11 10 14 14 C 1.46929 * 120.62740 * 148.62854 * 9 7 2 15 15 H 1.08997 * 109.70615 * 246.26895 * 14 9 7 16 16 C 1.52996 * 109.58964 * 6.63194 * 14 9 7 17 17 N 1.46497 * 109.47008 * 299.88591 * 16 14 9 18 18 C 1.34782 * 120.00065 * 180.02562 * 17 16 14 19 19 O 1.21713 * 119.99732 * 0.02562 * 18 17 16 20 20 C 1.46464 * 119.99961 * 179.72263 * 18 17 16 21 21 C 1.36692 * 125.45044 * 179.97438 * 20 18 17 22 22 C 1.37399 * 113.32022 * 179.84328 * 21 20 18 23 23 C 1.34015 * 115.07082 * 0.45106 * 22 21 20 24 24 Cl 1.73604 * 124.53283 * 179.75523 * 23 22 21 25 25 S 1.70617 * 110.93839 * 359.75006 * 23 22 21 26 26 H 0.97003 * 119.99921 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.59104 * 113.79191 * 10 9 7 28 28 H 1.09006 * 109.70155 * 353.43627 * 10 9 7 29 29 H 1.08999 * 109.50228 * 185.40745 * 11 10 9 30 30 H 1.09008 * 109.50050 * 65.31001 * 11 10 9 31 31 H 1.08996 * 109.46129 * 301.34379 * 12 11 10 32 32 H 1.08999 * 109.44996 * 181.37594 * 12 11 10 33 33 H 1.08995 * 109.49936 * 178.68233 * 13 12 11 34 34 H 1.09005 * 109.52364 * 58.60007 * 13 12 11 35 35 H 1.09001 * 109.47088 * 179.88827 * 16 14 9 36 36 H 1.09000 * 109.47510 * 59.88549 * 16 14 9 37 37 H 0.97005 * 120.00545 * 359.97438 * 17 16 14 38 38 H 1.08008 * 123.33869 * 0.02562 * 21 20 18 39 39 H 1.07994 * 122.46926 * 180.20825 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0540 -1.2230 -0.2771 9 7 1.3715 -2.3617 0.3498 10 6 0.2766 -2.3467 1.3294 11 6 0.5918 -3.3574 2.4366 12 6 0.8559 -4.7285 1.8100 13 6 2.0661 -4.6406 0.8774 14 6 1.7677 -3.6443 -0.2474 15 1 0.9575 -4.0265 -0.8684 16 6 3.0204 -3.4466 -1.1032 17 7 2.7363 -2.4828 -2.1692 18 6 3.6992 -2.1513 -3.0522 19 8 4.8046 -2.6530 -2.9640 20 6 3.4135 -1.1923 -4.1217 21 6 4.3029 -0.7775 -5.0731 22 6 3.7691 0.1265 -5.9595 23 6 2.4877 0.4505 -5.7376 24 17 1.5748 1.5701 -6.7004 25 16 1.8735 -0.3846 -4.3825 26 1 -0.4850 0.8401 0.0004 27 1 -0.6568 -2.6217 0.8385 28 1 0.1829 -1.3499 1.7606 29 1 -0.2556 -3.4262 3.1186 30 1 1.4756 -3.0320 2.9855 31 1 -0.0191 -5.0423 1.2409 32 1 1.0564 -5.4549 2.5976 33 1 2.2679 -5.6226 0.4496 34 1 2.9363 -4.3034 1.4407 35 1 3.3137 -4.3995 -1.5436 36 1 3.8309 -3.0699 -0.4793 37 1 1.8550 -2.0837 -2.2402 38 1 5.3232 -1.1280 -5.1249 39 1 4.3411 0.5482 -6.7727 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024788636.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:05 Heat of formation + Delta-G solvation = -6.091950 kcal Electronic energy + Delta-G solvation = -24009.390922 eV Core-core repulsion = 20490.353390 eV Total energy + Delta-G solvation = -3519.037533 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.91090 -39.46772 -38.72573 -37.56452 -35.75230 -34.87874 -32.57396 -31.72143 -30.61639 -27.76610 -26.76502 -25.46071 -23.82654 -22.70326 -22.03425 -20.78413 -20.51243 -19.71095 -18.25171 -17.41728 -17.25417 -17.00751 -16.22363 -16.11613 -15.75057 -15.50191 -14.93501 -14.80672 -14.73567 -14.52593 -14.34841 -14.05652 -13.76719 -13.56651 -13.43899 -12.84617 -12.83649 -12.59421 -12.54821 -12.41639 -12.31627 -12.05869 -11.81877 -11.78456 -11.51823 -11.28409 -11.08553 -10.93442 -10.51333 -10.06988 -9.76433 -9.69477 -8.54818 -7.83437 -5.28033 -0.72452 -0.06601 0.66236 1.03331 1.21448 1.39139 1.45518 1.50098 2.10915 2.28691 2.49504 3.31846 3.58452 3.82717 3.99440 4.06036 4.23573 4.27636 4.28667 4.43671 4.55316 4.65280 4.72573 4.74167 4.87575 4.95422 5.01296 5.14448 5.15395 5.24075 5.29512 5.36260 5.47661 5.53700 5.62825 5.76798 5.83853 6.44642 6.55187 7.14194 7.20760 7.89326 8.43539 9.20756 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.014054 B = 0.004626 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.874379 B = 6051.839794 C = 7060.443025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.019 4.019 3 Si 0.915 3.085 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.242 4.242 8 H 0.058 0.942 9 N -0.600 5.600 10 C 0.180 3.820 11 C -0.135 4.135 12 C -0.102 4.102 13 C -0.121 4.121 14 C 0.158 3.842 15 H 0.033 0.967 16 C 0.137 3.863 17 N -0.691 5.691 18 C 0.580 3.420 19 O -0.576 6.576 20 C -0.276 4.276 21 C -0.049 4.049 22 C -0.127 4.127 23 C -0.178 4.178 24 Cl -0.001 7.001 25 S 0.255 5.745 26 H 0.249 0.751 27 H 0.003 0.997 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.080 0.920 36 H 0.051 0.949 37 H 0.409 0.591 38 H 0.173 0.827 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.223 -3.908 -8.719 9.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.217 4.217 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.211 1.211 7 C -0.372 4.372 8 H 0.075 0.925 9 N -0.325 5.325 10 C 0.054 3.946 11 C -0.174 4.174 12 C -0.140 4.140 13 C -0.161 4.161 14 C 0.052 3.948 15 H 0.051 0.949 16 C 0.014 3.986 17 N -0.340 5.340 18 C 0.367 3.633 19 O -0.459 6.459 20 C -0.397 4.397 21 C -0.083 4.083 22 C -0.160 4.160 23 C -0.325 4.325 24 Cl 0.028 6.972 25 S 0.522 5.478 26 H 0.059 0.941 27 H 0.021 0.979 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.246 0.754 38 H 0.190 0.810 39 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 1.330 -4.056 -7.986 9.055 hybrid contribution 1.075 1.813 -0.631 2.200 sum 2.405 -2.244 -8.617 9.224 Atomic orbital electron populations 1.70104 1.05737 1.25424 1.54669 1.25324 0.95395 0.99465 1.01509 0.86074 0.78515 0.82813 0.78098 1.20535 1.21875 1.21094 1.19110 0.92384 0.85405 1.40323 0.92468 1.44237 1.40080 1.02159 1.46020 1.20541 0.88558 0.96974 0.88515 1.22049 1.00500 0.96648 0.98247 1.21343 0.97720 0.96336 0.98600 1.21888 0.98433 0.98784 0.96955 1.20911 0.93373 0.87588 0.92924 0.94916 1.21370 0.97903 0.91436 0.87896 1.45999 1.14967 1.44324 1.28669 1.17097 0.84408 0.80811 0.80983 1.90743 1.23431 1.56199 1.75556 1.24785 1.00258 1.09284 1.05392 1.20847 1.01027 0.94985 0.91404 1.20269 0.93029 0.99863 1.02844 1.25223 0.99120 1.05138 1.02999 1.98371 1.72372 1.58124 1.68371 1.84024 1.10191 1.33943 1.19593 0.94112 0.97885 0.93643 0.91747 0.93575 0.92390 0.90730 0.89849 0.92694 0.90184 0.93104 0.75381 0.80990 0.79844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.11 11.46 21.65 0.25 -48.86 16 2 C -0.02 -0.99 4.88 84.86 0.41 -0.58 16 3 Si 0.92 43.12 29.59 68.60 2.03 45.15 16 4 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 7 C -0.24 -11.94 6.93 84.03 0.58 -11.36 16 8 H 0.06 2.95 5.89 -2.91 -0.02 2.93 16 9 N -0.60 -26.73 2.96 -675.23 -2.00 -28.73 16 10 C 0.18 7.89 5.28 86.36 0.46 8.35 16 11 C -0.14 -4.66 6.08 30.67 0.19 -4.47 16 12 C -0.10 -2.93 5.88 30.62 0.18 -2.75 16 13 C -0.12 -3.62 5.37 30.67 0.16 -3.45 16 14 C 0.16 5.77 3.01 44.97 0.14 5.91 16 15 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 16 C 0.14 5.02 4.43 86.38 0.38 5.41 16 17 N -0.69 -26.72 3.84 -467.29 -1.79 -28.52 16 18 C 0.58 22.41 7.78 86.38 0.67 23.08 16 19 O -0.58 -24.47 16.84 -4.39 -0.07 -24.55 16 20 C -0.28 -9.22 6.45 24.05 0.16 -9.06 16 21 C -0.05 -1.34 10.01 21.71 0.22 -1.12 16 22 C -0.13 -2.98 10.08 21.11 0.21 -2.76 16 23 C -0.18 -4.71 6.82 66.86 0.46 -4.26 16 24 Cl 0.00 -0.02 29.27 -2.72 -0.08 -0.10 16 25 S 0.26 8.07 22.15 -56.49 -1.25 6.82 16 26 H 0.25 13.26 8.31 -92.71 -0.77 12.49 16 27 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 28 H 0.05 2.30 6.33 -2.38 -0.02 2.28 16 29 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.05 1.65 8.14 -2.38 -0.02 1.64 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.05 2.05 7.43 -2.39 -0.02 2.03 16 37 H 0.41 16.65 6.49 -92.70 -0.60 16.05 16 38 H 0.17 4.18 8.06 -2.91 -0.02 4.16 16 39 H 0.18 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -58.43 344.27 1.77 -56.66 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.48 Total: 19.21 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 4.21 Total: 2.92 kcal Atomic # 7 Polarization: -102.57 SS G_CDS: -3.55 Total: -106.11 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.07 Total: -24.55 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: 8.07 SS G_CDS: -1.25 Total: 6.82 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -0.08 Total: -0.10 kcal Total: -58.43 1.77 -56.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024788636.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.568 kcal (2) G-P(sol) polarization free energy of solvation -58.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds