Wall clock time and date at job start Tue Mar 31 2020 15:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 120.00356 * 2 1 4 4 H 1.48501 * 109.47422 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47322 * 300.00455 * 3 2 1 6 6 H 1.48502 * 109.47156 * 60.00199 * 3 2 1 7 7 C 1.38821 * 120.00175 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00357 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99481 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99637 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47202 * 155.00253 * 10 9 7 12 12 C 1.52996 * 109.47430 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47020 * 300.00129 * 12 11 10 14 14 N 1.46499 * 109.47377 * 179.97438 * 13 12 11 15 15 C 1.34772 * 120.00466 * 154.99491 * 14 13 12 16 16 O 1.21726 * 119.99815 * 0.02562 * 15 14 13 17 17 C 1.46441 * 120.00319 * 180.02562 * 15 14 13 18 18 S 1.75825 * 125.45935 * 0.02807 * 17 15 14 19 19 C 1.70608 * 91.58706 * 179.97438 * 18 17 15 20 20 C 1.33771 * 110.99600 * 0.02562 * 19 18 17 21 21 C 1.36797 * 125.46221 * 180.02562 * 17 15 14 22 22 Cl 1.73598 * 123.37835 * 359.97438 * 21 17 15 23 23 C 1.53000 * 109.47457 * 59.99844 * 13 12 11 24 24 C 1.52996 * 109.46760 * 300.00054 * 23 13 12 25 25 H 0.96999 * 120.00155 * 359.97438 * 1 2 3 26 26 H 0.96996 * 120.00365 * 0.02562 * 9 7 2 27 27 H 1.08992 * 109.47198 * 35.00297 * 10 9 7 28 28 H 1.09006 * 109.47142 * 59.99774 * 11 10 9 29 29 H 1.09004 * 109.46873 * 300.00476 * 11 10 9 30 30 H 1.09003 * 109.47109 * 180.02562 * 12 11 10 31 31 H 1.08992 * 109.47037 * 60.00003 * 12 11 10 32 32 H 1.09006 * 109.46921 * 299.99781 * 13 12 11 33 33 H 0.97003 * 119.99920 * 335.00282 * 14 13 12 34 34 H 1.07997 * 124.50568 * 179.73652 * 19 18 17 35 35 H 1.08001 * 122.45312 * 179.97438 * 20 19 18 36 36 H 1.08992 * 109.46973 * 59.99897 * 23 13 12 37 37 H 1.09002 * 109.47514 * 180.02562 * 23 13 12 38 38 H 1.09001 * 109.47413 * 299.99415 * 24 23 13 39 39 H 1.09005 * 109.47006 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.1808 -4.7522 0.6090 12 6 1.9455 -6.0773 0.6085 13 6 2.3090 -6.4558 -0.8287 14 7 3.0417 -7.7244 -0.8293 15 6 3.0327 -8.5074 -1.9261 16 8 2.4160 -8.1604 -2.9166 17 6 3.7647 -9.7757 -1.9265 18 16 4.6985 -10.4148 -0.5807 19 6 5.1245 -11.8043 -1.4745 20 6 4.5897 -11.7684 -2.7001 21 6 3.8316 -10.6532 -2.9738 22 17 3.0385 -10.3870 -4.4949 23 6 3.1862 -5.3605 -1.4383 24 6 2.4214 -4.0354 -1.4377 25 1 -0.4850 0.8400 0.0004 26 1 0.3556 -2.3880 -0.0005 27 1 2.9687 -3.5506 0.5889 28 1 0.2701 -4.8584 0.0196 29 1 0.9215 -4.4823 1.6328 30 1 1.3204 -6.8578 1.0423 31 1 2.8564 -5.9714 1.1977 32 1 1.3980 -6.5617 -1.4179 33 1 3.5334 -8.0008 -0.0401 34 1 5.7473 -12.6041 -1.1020 35 1 4.7419 -12.5570 -3.4221 36 1 4.0970 -5.2546 -0.8492 37 1 3.4447 -5.6299 -2.4624 38 1 1.5105 -4.1413 -2.0270 39 1 3.0462 -3.2551 -1.8725 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026497676.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:09 Heat of formation + Delta-G solvation = -9.227957 kcal Electronic energy + Delta-G solvation = -22753.596398 eV Core-core repulsion = 19234.422878 eV Total energy + Delta-G solvation = -3519.173520 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -40.14546 -38.58432 -37.63485 -36.33327 -34.86944 -33.09249 -31.00410 -30.40785 -29.97923 -27.40456 -25.31962 -23.62622 -22.42603 -21.89895 -20.74910 -19.94518 -19.57492 -18.73840 -17.04481 -16.79380 -16.06677 -15.71200 -15.31552 -14.98384 -14.20536 -14.03043 -13.91125 -13.75898 -13.69238 -13.49716 -13.21342 -12.96898 -12.53015 -12.03719 -11.80723 -11.78933 -11.71226 -11.43622 -11.09462 -11.04589 -10.82272 -10.75435 -10.65471 -10.15191 -10.09917 -10.00381 -9.75096 -9.58027 -9.39326 -8.99913 -8.93011 -8.83704 -6.91984 -5.73745 -3.02036 -0.04791 0.74685 1.22658 1.79071 2.14385 2.93503 2.96867 3.44913 3.50556 3.52752 4.35779 4.57635 4.61722 4.66400 4.90223 5.04098 5.17762 5.27477 5.43584 5.50982 5.53648 5.61153 5.68524 5.73286 5.84916 5.88608 6.03601 6.23028 6.24777 6.30731 6.48617 6.57409 6.64965 6.74252 7.00651 7.17280 7.32206 7.73402 8.03140 8.45159 9.56178 10.14974 10.49430 11.49139 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.026054 B = 0.002365 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.451696 B =11834.353167 C =12261.280030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.177 3.823 11 C -0.120 4.120 12 C -0.119 4.119 13 C 0.147 3.853 14 N -0.720 5.720 15 C 0.583 3.417 16 O -0.506 6.506 17 C -0.261 4.261 18 S 0.241 5.759 19 C -0.224 4.224 20 C -0.143 4.143 21 C 0.014 3.986 22 Cl -0.012 7.012 23 C -0.124 4.124 24 C -0.132 4.132 25 H 0.254 0.746 26 H 0.383 0.617 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.393 0.607 34 H 0.178 0.822 35 H 0.155 0.845 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.791 -28.144 -0.507 30.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 C -0.159 4.159 12 C -0.158 4.158 13 C 0.044 3.956 14 N -0.371 5.371 15 C 0.368 3.632 16 O -0.382 6.382 17 C -0.383 4.383 18 S 0.507 5.493 19 C -0.362 4.362 20 C -0.174 4.174 21 C -0.028 4.028 22 Cl 0.017 6.983 23 C -0.163 4.163 24 C -0.173 4.173 25 H 0.064 0.936 26 H 0.217 0.783 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.227 0.773 34 H 0.195 0.805 35 H 0.172 0.828 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.710 -27.196 0.123 29.229 hybrid contribution 0.178 0.111 -1.296 1.313 sum 10.888 -27.086 -1.173 29.216 Atomic orbital electron populations 1.69667 1.05089 1.25464 1.57962 1.24740 0.95505 0.97657 1.03222 0.86146 0.78784 0.84296 0.77154 1.20594 1.21925 1.21936 1.19286 0.90985 0.84148 1.42248 0.91184 1.42438 1.05801 0.99807 1.88541 1.20241 0.94278 0.85969 0.92787 1.21752 0.98957 0.93355 1.01838 1.21760 1.00907 0.98404 0.94713 1.21175 0.95473 0.81191 0.97761 1.46033 1.53498 1.22190 1.15365 1.16758 0.80637 0.81902 0.83907 1.90918 1.42310 1.72483 1.32498 1.24667 1.11639 1.02542 0.99466 1.83121 1.42024 1.11131 1.13061 1.25203 1.07253 1.04757 0.99023 1.19791 1.00424 0.99071 0.98110 1.20388 0.98170 0.94723 0.89520 1.98419 1.77633 1.96093 1.26190 1.21907 0.98562 0.95330 1.00548 1.22225 0.99808 0.94434 1.00820 0.93611 0.78304 0.93596 0.91901 0.91291 0.91787 0.91517 0.89072 0.77297 0.80474 0.82773 0.92270 0.92224 0.92428 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 3 Si 0.90 22.53 29.55 -169.99 -5.02 17.50 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 7 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.10 5.12 -53.42 -0.27 -18.37 16 10 C 0.18 3.43 2.77 -67.93 -0.19 3.24 16 11 C -0.12 -1.89 5.39 -26.73 -0.14 -2.04 16 12 C -0.12 -1.45 5.39 -26.73 -0.14 -1.59 16 13 C 0.15 1.94 2.45 -67.93 -0.17 1.78 16 14 N -0.72 -8.07 5.07 -55.19 -0.28 -8.35 16 15 C 0.58 7.62 7.74 -12.96 -0.10 7.52 16 16 O -0.51 -8.44 14.75 5.17 0.08 -8.37 16 17 C -0.26 -2.74 6.45 -36.80 -0.24 -2.97 16 18 S 0.24 1.51 22.15 -107.50 -2.38 -0.87 16 19 C -0.22 -1.24 10.92 29.16 0.32 -0.92 16 20 C -0.14 -1.04 10.06 -41.38 -0.42 -1.45 16 21 C 0.01 0.15 6.40 -40.34 -0.26 -0.11 16 22 Cl -0.01 -0.15 27.24 -51.86 -1.41 -1.56 16 23 C -0.12 -1.85 5.49 -26.73 -0.15 -1.99 16 24 C -0.13 -2.40 5.50 -26.73 -0.15 -2.55 16 25 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.38 10.20 7.80 -40.82 -0.32 9.88 16 27 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 1.39 7.58 -51.93 -0.39 0.99 16 33 H 0.39 3.30 7.71 -40.82 -0.31 2.98 16 34 H 0.18 0.45 8.06 -52.49 -0.42 0.02 16 35 H 0.15 0.82 8.06 -52.49 -0.42 0.39 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 350.82 15.07 5.29 5.29 Total: -1.00 -32.80 350.82 -10.38 -43.18 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -5.22 Total: 7.49 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -1.88 Total: -8.30 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.17 Total: -54.36 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.08 Total: -8.37 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.38 Total: -0.87 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.41 Total: -1.56 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.80 -10.38 -43.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026497676.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.949 kcal (2) G-P(sol) polarization free energy of solvation -32.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds