Wall clock time and date at job start Tue Mar 31 2020 15:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 120.00356 * 2 1 4 4 H 1.48501 * 109.47422 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47322 * 300.00455 * 3 2 1 6 6 H 1.48502 * 109.47156 * 60.00199 * 3 2 1 7 7 C 1.38821 * 120.00175 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00357 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99481 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99637 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47202 * 155.00253 * 10 9 7 12 12 C 1.52996 * 109.47430 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47020 * 300.00129 * 12 11 10 14 14 N 1.46499 * 109.47377 * 179.97438 * 13 12 11 15 15 C 1.34772 * 120.00466 * 154.99491 * 14 13 12 16 16 O 1.21726 * 119.99815 * 0.02562 * 15 14 13 17 17 C 1.46441 * 120.00319 * 180.02562 * 15 14 13 18 18 S 1.75825 * 125.45935 * 0.02807 * 17 15 14 19 19 C 1.70608 * 91.58706 * 179.97438 * 18 17 15 20 20 C 1.33771 * 110.99600 * 0.02562 * 19 18 17 21 21 C 1.36797 * 125.46221 * 180.02562 * 17 15 14 22 22 Cl 1.73598 * 123.37835 * 359.97438 * 21 17 15 23 23 C 1.53000 * 109.47457 * 59.99844 * 13 12 11 24 24 C 1.52996 * 109.46760 * 300.00054 * 23 13 12 25 25 H 0.96999 * 120.00155 * 359.97438 * 1 2 3 26 26 H 0.96996 * 120.00365 * 0.02562 * 9 7 2 27 27 H 1.08992 * 109.47198 * 35.00297 * 10 9 7 28 28 H 1.09006 * 109.47142 * 59.99774 * 11 10 9 29 29 H 1.09004 * 109.46873 * 300.00476 * 11 10 9 30 30 H 1.09003 * 109.47109 * 180.02562 * 12 11 10 31 31 H 1.08992 * 109.47037 * 60.00003 * 12 11 10 32 32 H 1.09006 * 109.46921 * 299.99781 * 13 12 11 33 33 H 0.97003 * 119.99920 * 335.00282 * 14 13 12 34 34 H 1.07997 * 124.50568 * 179.73652 * 19 18 17 35 35 H 1.08001 * 122.45312 * 179.97438 * 20 19 18 36 36 H 1.08992 * 109.46973 * 59.99897 * 23 13 12 37 37 H 1.09002 * 109.47514 * 180.02562 * 23 13 12 38 38 H 1.09001 * 109.47413 * 299.99415 * 24 23 13 39 39 H 1.09005 * 109.47006 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.1808 -4.7522 0.6090 12 6 1.9455 -6.0773 0.6085 13 6 2.3090 -6.4558 -0.8287 14 7 3.0417 -7.7244 -0.8293 15 6 3.0327 -8.5074 -1.9261 16 8 2.4160 -8.1604 -2.9166 17 6 3.7647 -9.7757 -1.9265 18 16 4.6985 -10.4148 -0.5807 19 6 5.1245 -11.8043 -1.4745 20 6 4.5897 -11.7684 -2.7001 21 6 3.8316 -10.6532 -2.9738 22 17 3.0385 -10.3870 -4.4949 23 6 3.1862 -5.3605 -1.4383 24 6 2.4214 -4.0354 -1.4377 25 1 -0.4850 0.8400 0.0004 26 1 0.3556 -2.3880 -0.0005 27 1 2.9687 -3.5506 0.5889 28 1 0.2701 -4.8584 0.0196 29 1 0.9215 -4.4823 1.6328 30 1 1.3204 -6.8578 1.0423 31 1 2.8564 -5.9714 1.1977 32 1 1.3980 -6.5617 -1.4179 33 1 3.5334 -8.0008 -0.0401 34 1 5.7473 -12.6041 -1.1020 35 1 4.7419 -12.5570 -3.4221 36 1 4.0970 -5.2546 -0.8492 37 1 3.4447 -5.6299 -2.4624 38 1 1.5105 -4.1413 -2.0270 39 1 3.0462 -3.2551 -1.8725 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026497676.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:08 Heat of formation + Delta-G solvation = -30.692051 kcal Electronic energy + Delta-G solvation = -22754.527151 eV Core-core repulsion = 19234.422878 eV Total energy + Delta-G solvation = -3520.104273 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.15430 -39.56040 -38.65577 -37.07855 -36.36429 -34.69162 -32.60788 -31.69467 -30.95820 -28.84960 -26.19477 -25.35191 -23.68522 -23.02200 -21.90026 -21.12386 -20.43104 -19.69048 -18.98651 -17.62730 -16.96223 -16.93218 -16.42223 -16.26501 -15.68139 -15.37773 -15.06763 -14.86741 -14.81914 -14.50130 -14.30606 -14.02778 -13.78774 -13.44487 -13.14942 -13.08718 -12.85680 -12.52138 -12.42604 -12.31479 -12.28828 -12.09926 -12.02646 -11.84903 -11.64846 -11.46995 -11.20828 -11.01784 -10.83596 -10.21415 -9.87027 -9.49150 -8.98451 -7.92758 -5.20632 -0.69733 0.13765 0.71830 1.19006 1.42784 1.47033 1.48112 1.57759 2.01073 2.05218 2.57238 3.40316 3.63500 3.77393 3.85305 3.90148 4.00786 4.15669 4.29033 4.37339 4.40133 4.52687 4.59919 4.64895 4.68123 4.85034 4.93878 4.99263 5.00798 5.11325 5.13558 5.25638 5.28438 5.42910 5.52190 5.56016 5.64690 6.30291 6.43511 7.12125 7.35624 8.13565 8.35676 9.31246 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.026054 B = 0.002365 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.451696 B =11834.353167 C =12261.280030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.297 1.297 6 H -0.292 1.292 7 C -0.233 4.233 8 H 0.076 0.924 9 N -0.740 5.740 10 C 0.173 3.827 11 C -0.113 4.113 12 C -0.106 4.106 13 C 0.155 3.845 14 N -0.706 5.706 15 C 0.580 3.420 16 O -0.554 6.554 17 C -0.305 4.305 18 S 0.308 5.692 19 C -0.203 4.203 20 C -0.160 4.160 21 C 0.004 3.996 22 Cl -0.041 7.041 23 C -0.112 4.112 24 C -0.122 4.122 25 H 0.249 0.751 26 H 0.371 0.629 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.411 0.589 34 H 0.216 0.784 35 H 0.171 0.829 36 H 0.078 0.922 37 H 0.046 0.954 38 H 0.038 0.962 39 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.432 -30.599 1.559 33.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.799 3.201 4 H -0.189 1.189 5 H -0.225 1.225 6 H -0.220 1.220 7 C -0.365 4.365 8 H 0.094 0.906 9 N -0.379 5.379 10 C 0.065 3.935 11 C -0.152 4.152 12 C -0.144 4.144 13 C 0.050 3.950 14 N -0.358 5.358 15 C 0.367 3.633 16 O -0.434 6.434 17 C -0.427 4.427 18 S 0.574 5.426 19 C -0.341 4.341 20 C -0.190 4.190 21 C -0.039 4.039 22 Cl -0.012 7.012 23 C -0.151 4.151 24 C -0.163 4.163 25 H 0.058 0.942 26 H 0.203 0.797 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.247 0.753 34 H 0.233 0.767 35 H 0.188 0.812 36 H 0.096 0.904 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 13.415 -29.705 2.228 32.669 hybrid contribution -0.553 0.745 -1.891 2.106 sum 12.862 -28.960 0.337 31.689 Atomic orbital electron populations 1.69823 1.06610 1.25816 1.60040 1.25549 0.96365 1.01053 1.04235 0.85115 0.78322 0.80079 0.76542 1.18950 1.22472 1.21965 1.19661 0.91390 0.85279 1.40186 0.90648 1.42688 1.05462 1.01171 1.88533 1.20493 0.94598 0.84999 0.93446 1.21636 0.98353 0.94043 1.01143 1.21667 1.01907 0.96739 0.94105 1.20898 0.94376 0.81586 0.98096 1.45774 1.53170 1.21078 1.15769 1.17162 0.80085 0.82711 0.83367 1.90891 1.44447 1.73831 1.34192 1.24568 1.13960 1.02101 1.02040 1.82865 1.39375 1.10157 1.10193 1.25733 1.05529 1.04972 0.97904 1.19921 1.00796 0.98765 0.99503 1.20754 0.98682 0.96004 0.88510 1.98403 1.78371 1.96309 1.28147 1.21764 0.99025 0.93876 1.00483 1.22028 0.98959 0.95798 0.99557 0.94168 0.79742 0.93237 0.92923 0.91209 0.89168 0.89130 0.91440 0.75256 0.76691 0.81164 0.90387 0.93491 0.94335 0.94090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.51 13.06 21.65 0.28 -60.23 16 2 C -0.08 -4.67 5.50 84.87 0.47 -4.20 16 3 Si 0.97 46.81 29.55 68.60 2.03 48.83 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 6 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 7 C -0.23 -13.04 9.93 84.04 0.83 -12.20 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.74 -37.58 5.12 -322.93 -1.65 -39.24 16 10 C 0.17 6.66 2.77 44.99 0.12 6.79 16 11 C -0.11 -3.46 5.39 30.59 0.16 -3.29 16 12 C -0.11 -2.28 5.39 30.59 0.16 -2.12 16 13 C 0.15 3.91 2.45 44.99 0.11 4.02 16 14 N -0.71 -14.52 5.07 -446.72 -2.27 -16.78 16 15 C 0.58 14.86 7.74 86.38 0.67 15.53 16 16 O -0.55 -19.13 14.75 -4.43 -0.07 -19.20 16 17 C -0.31 -5.93 6.45 24.07 0.16 -5.78 16 18 S 0.31 2.67 22.15 -56.49 -1.25 1.42 16 19 C -0.20 -1.35 10.92 66.80 0.73 -0.62 16 20 C -0.16 -1.91 10.06 21.10 0.21 -1.70 16 21 C 0.00 0.08 6.40 21.78 0.14 0.22 16 22 Cl -0.04 -1.01 27.24 -2.72 -0.07 -1.08 16 23 C -0.11 -3.28 5.49 30.59 0.17 -3.11 16 24 C -0.12 -4.56 5.50 30.59 0.17 -4.39 16 25 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 26 H 0.37 20.40 7.80 -92.71 -0.72 19.68 16 27 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 28 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 30 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 2.08 7.58 -2.38 -0.02 2.06 16 33 H 0.41 5.49 7.71 -92.71 -0.71 4.78 16 34 H 0.22 -0.22 8.06 -2.91 -0.02 -0.24 16 35 H 0.17 1.39 8.06 -2.91 -0.02 1.36 16 36 H 0.08 1.99 8.14 -2.39 -0.02 1.98 16 37 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 Total: -1.00 -74.80 350.82 0.76 -74.04 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: -0.35 Total: 23.09 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: 4.11 Total: -10.85 kcal Atomic # 7 Polarization: -112.61 SS G_CDS: -3.64 Total: -116.25 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.07 Total: -19.20 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.83 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -1.25 Total: 1.42 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.07 Total: -1.08 kcal Total: -74.80 0.76 -74.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026497676.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.349 kcal (2) G-P(sol) polarization free energy of solvation -74.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds