Wall clock time and date at job start Tue Mar 31 2020 15:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99936 * 2 1 4 4 H 1.48503 * 109.47101 * 270.00056 * 3 2 1 5 5 H 1.48504 * 109.47431 * 29.99935 * 3 2 1 6 6 H 1.48498 * 109.47164 * 150.00177 * 3 2 1 7 7 C 1.38813 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00198 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99501 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99584 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46998 * 204.99673 * 10 9 7 12 12 C 1.53000 * 109.47328 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47060 * 60.00126 * 12 11 10 14 14 N 1.46500 * 109.47473 * 180.02562 * 13 12 11 15 15 C 1.34770 * 120.00256 * 205.00145 * 14 13 12 16 16 O 1.21706 * 120.00263 * 359.97438 * 15 14 13 17 17 C 1.46574 * 120.00130 * 180.02562 * 15 14 13 18 18 C 1.36673 * 125.45220 * 179.97438 * 17 15 14 19 19 C 1.37531 * 113.28644 * 179.97438 * 18 17 15 20 20 Cl 1.73595 * 122.46104 * 179.97438 * 19 18 17 21 21 C 1.33874 * 115.07991 * 359.97438 * 19 18 17 22 22 S 1.70613 * 110.95795 * 359.72669 * 21 19 18 23 23 C 1.53006 * 109.47127 * 300.00449 * 13 12 11 24 24 C 1.52997 * 109.47164 * 59.99836 * 23 13 12 25 25 H 0.96998 * 120.00284 * 359.97438 * 1 2 3 26 26 H 0.97001 * 120.00671 * 0.02562 * 9 7 2 27 27 H 1.08992 * 109.47276 * 325.00220 * 10 9 7 28 28 H 1.09004 * 109.47368 * 60.00227 * 11 10 9 29 29 H 1.09001 * 109.47372 * 300.00383 * 11 10 9 30 30 H 1.09002 * 109.47398 * 180.02562 * 12 11 10 31 31 H 1.09001 * 109.47194 * 300.00476 * 12 11 10 32 32 H 1.08998 * 109.47533 * 59.99948 * 13 12 11 33 33 H 0.97005 * 119.99374 * 25.00210 * 14 13 12 34 34 H 1.07995 * 123.35937 * 0.03751 * 18 17 15 35 35 H 1.08001 * 124.52370 * 180.02562 * 21 19 18 36 36 H 1.09001 * 109.47002 * 299.99574 * 23 13 12 37 37 H 1.09000 * 109.47050 * 179.97438 * 23 13 12 38 38 H 1.09002 * 109.47045 * 180.02562 * 24 23 13 39 39 H 1.09001 * 109.47375 * 59.99966 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 1.1809 -4.7516 -0.6133 12 6 1.9456 -6.0767 -0.6139 13 6 2.3090 -6.4565 0.8230 14 7 3.0418 -7.7251 0.8224 15 6 3.0327 -8.5091 1.9186 16 8 2.4161 -8.1630 2.9092 17 6 3.7663 -9.7780 1.9182 18 6 3.8331 -10.6554 2.9640 19 6 4.5914 -11.7698 2.6911 20 17 4.8360 -13.0374 3.8517 21 6 5.1271 -11.8054 1.4647 22 16 4.6936 -10.4195 0.5690 23 6 3.1862 -5.3617 1.4336 24 6 2.4214 -4.0366 1.4342 25 1 -0.4850 0.8400 0.0004 26 1 0.3555 -2.3881 -0.0023 27 1 2.9687 -3.5500 -0.5920 28 1 0.9216 -4.4808 -1.6368 29 1 0.2702 -4.8583 -0.0239 30 1 1.3208 -6.8566 -1.0493 31 1 2.8565 -5.9703 -1.2030 32 1 1.3982 -6.5630 1.4121 33 1 3.5335 -8.0007 0.0329 34 1 3.3388 -10.4906 3.9099 35 1 5.7468 -12.6068 1.0904 36 1 4.0971 -5.2552 0.8445 37 1 3.4447 -5.6320 2.4574 38 1 3.0465 -3.2565 1.8688 39 1 1.5105 -4.1430 2.0233 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026570905.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:38 Heat of formation + Delta-G solvation = -14.031889 kcal Electronic energy + Delta-G solvation = -22463.500960 eV Core-core repulsion = 18944.119125 eV Total energy + Delta-G solvation = -3519.381834 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.22884 -38.67819 -37.81898 -36.40217 -34.93266 -33.13582 -31.01643 -30.44193 -30.03682 -27.50439 -25.44255 -23.62238 -22.45724 -21.90964 -20.81237 -19.99766 -19.55891 -18.79779 -17.06495 -16.82720 -16.17084 -15.93543 -15.34466 -15.06133 -14.29764 -14.17213 -13.88544 -13.77222 -13.68748 -13.55692 -13.27916 -13.03972 -12.57620 -12.08485 -11.86551 -11.83819 -11.81334 -11.46953 -11.34143 -11.08693 -10.82494 -10.79049 -10.69809 -10.25864 -10.16382 -10.11896 -9.79023 -9.59963 -9.48159 -9.10507 -8.96049 -8.85248 -6.93676 -5.74971 -3.03487 -0.07824 0.71991 1.05400 1.68989 2.03085 2.88239 2.91461 3.44135 3.49437 3.51142 4.28449 4.53454 4.60247 4.67595 4.85308 4.99868 5.12152 5.23769 5.39700 5.50971 5.56258 5.57600 5.65127 5.69780 5.80965 5.85157 6.00082 6.17754 6.21274 6.27392 6.44463 6.54123 6.61347 6.71185 6.98036 7.14685 7.24352 7.71526 7.93143 8.43874 9.54812 10.13355 10.47793 11.47756 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.035075 B = 0.002036 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.089776 B =13747.096463 C =13908.966611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.177 3.823 11 C -0.120 4.120 12 C -0.119 4.119 13 C 0.146 3.854 14 N -0.719 5.719 15 C 0.588 3.412 16 O -0.520 6.520 17 C -0.252 4.252 18 C -0.054 4.054 19 C -0.059 4.059 20 Cl -0.045 7.045 21 C -0.233 4.233 22 S 0.250 5.750 23 C -0.125 4.125 24 C -0.132 4.132 25 H 0.255 0.745 26 H 0.384 0.616 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.394 0.606 34 H 0.165 0.835 35 H 0.180 0.820 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.676 -27.744 0.190 29.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 C -0.159 4.159 12 C -0.158 4.158 13 C 0.043 3.957 14 N -0.369 5.369 15 C 0.373 3.627 16 O -0.397 6.397 17 C -0.373 4.373 18 C -0.087 4.087 19 C -0.099 4.099 20 Cl -0.017 7.017 21 C -0.372 4.372 22 S 0.516 5.484 23 C -0.164 4.164 24 C -0.173 4.173 25 H 0.064 0.936 26 H 0.217 0.783 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.228 0.772 34 H 0.182 0.818 35 H 0.197 0.803 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.672 -26.925 -0.485 28.967 hybrid contribution 0.277 -0.022 1.275 1.305 sum 10.949 -26.947 0.790 29.097 Atomic orbital electron populations 1.69660 1.05083 1.25598 1.57824 1.24745 0.95518 0.97677 1.03173 0.86209 0.78662 0.83976 0.77455 1.21789 1.21819 1.20806 1.19236 0.90957 0.84150 1.42448 0.91229 1.42430 1.05796 0.99783 1.88561 1.20244 0.94302 0.85995 0.92779 1.21754 0.98957 0.93322 1.01884 1.21765 1.00962 0.98458 0.94620 1.21209 0.95488 0.81141 0.97888 1.46044 1.53289 1.22162 1.15399 1.16822 0.80292 0.81859 0.83715 1.90878 1.43028 1.72898 1.32878 1.24661 1.10614 1.02119 0.99858 1.20540 0.97195 0.90649 1.00313 1.19561 1.04302 0.93862 0.92205 1.98382 1.95881 1.49430 1.58016 1.25256 1.07939 1.05870 0.98138 1.83130 1.42203 1.09940 1.13086 1.21915 0.98595 0.95350 1.00526 1.22230 0.99811 0.94392 1.00870 0.93553 0.78291 0.93573 0.91248 0.91880 0.91743 0.91472 0.89026 0.77169 0.81801 0.80255 0.92193 0.92233 0.91702 0.92406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -17.91 5.12 -53.43 -0.27 -18.18 16 10 C 0.18 3.37 2.77 -67.93 -0.19 3.18 16 11 C -0.12 -1.85 5.39 -26.73 -0.14 -2.00 16 12 C -0.12 -1.40 5.39 -26.73 -0.14 -1.54 16 13 C 0.15 1.86 2.45 -67.93 -0.17 1.69 16 14 N -0.72 -7.60 5.07 -55.15 -0.28 -7.88 16 15 C 0.59 7.23 7.75 -12.90 -0.10 7.13 16 16 O -0.52 -8.43 16.50 5.18 0.09 -8.35 16 17 C -0.25 -2.41 6.45 -36.79 -0.24 -2.65 16 18 C -0.05 -0.51 9.89 -40.40 -0.40 -0.91 16 19 C -0.06 -0.47 6.25 -41.37 -0.26 -0.73 16 20 Cl -0.05 -0.36 29.10 -51.86 -1.51 -1.86 16 21 C -0.23 -1.46 10.77 29.20 0.31 -1.14 16 22 S 0.25 1.50 22.15 -107.50 -2.38 -0.88 16 23 C -0.12 -1.80 5.49 -26.73 -0.15 -1.94 16 24 C -0.13 -2.35 5.50 -26.73 -0.15 -2.50 16 25 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.38 10.10 7.80 -40.82 -0.32 9.78 16 27 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 33 H 0.39 3.05 7.72 -40.82 -0.31 2.74 16 34 H 0.16 1.59 8.06 -52.49 -0.42 1.16 16 35 H 0.18 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 353.98 15.07 5.33 5.33 Total: -1.00 -32.04 353.98 -10.41 -42.44 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.22 Total: 8.08 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -1.86 Total: -8.62 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.17 Total: -53.52 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.09 Total: -8.35 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.38 Total: -0.88 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.51 Total: -1.86 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.04 -10.41 -42.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026570905.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.409 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds