Wall clock time and date at job start Tue Mar 31 2020 15:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99936 * 2 1 4 4 H 1.48503 * 109.47101 * 270.00056 * 3 2 1 5 5 H 1.48504 * 109.47431 * 29.99935 * 3 2 1 6 6 H 1.48498 * 109.47164 * 150.00177 * 3 2 1 7 7 C 1.38813 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00198 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99501 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99584 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46998 * 204.99673 * 10 9 7 12 12 C 1.53000 * 109.47328 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47060 * 60.00126 * 12 11 10 14 14 N 1.46500 * 109.47473 * 180.02562 * 13 12 11 15 15 C 1.34770 * 120.00256 * 205.00145 * 14 13 12 16 16 O 1.21706 * 120.00263 * 359.97438 * 15 14 13 17 17 C 1.46574 * 120.00130 * 180.02562 * 15 14 13 18 18 C 1.36673 * 125.45220 * 179.97438 * 17 15 14 19 19 C 1.37531 * 113.28644 * 179.97438 * 18 17 15 20 20 Cl 1.73595 * 122.46104 * 179.97438 * 19 18 17 21 21 C 1.33874 * 115.07991 * 359.97438 * 19 18 17 22 22 S 1.70613 * 110.95795 * 359.72669 * 21 19 18 23 23 C 1.53006 * 109.47127 * 300.00449 * 13 12 11 24 24 C 1.52997 * 109.47164 * 59.99836 * 23 13 12 25 25 H 0.96998 * 120.00284 * 359.97438 * 1 2 3 26 26 H 0.97001 * 120.00671 * 0.02562 * 9 7 2 27 27 H 1.08992 * 109.47276 * 325.00220 * 10 9 7 28 28 H 1.09004 * 109.47368 * 60.00227 * 11 10 9 29 29 H 1.09001 * 109.47372 * 300.00383 * 11 10 9 30 30 H 1.09002 * 109.47398 * 180.02562 * 12 11 10 31 31 H 1.09001 * 109.47194 * 300.00476 * 12 11 10 32 32 H 1.08998 * 109.47533 * 59.99948 * 13 12 11 33 33 H 0.97005 * 119.99374 * 25.00210 * 14 13 12 34 34 H 1.07995 * 123.35937 * 0.03751 * 18 17 15 35 35 H 1.08001 * 124.52370 * 180.02562 * 21 19 18 36 36 H 1.09001 * 109.47002 * 299.99574 * 23 13 12 37 37 H 1.09000 * 109.47050 * 179.97438 * 23 13 12 38 38 H 1.09002 * 109.47045 * 180.02562 * 24 23 13 39 39 H 1.09001 * 109.47375 * 59.99966 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 1.1809 -4.7516 -0.6133 12 6 1.9456 -6.0767 -0.6139 13 6 2.3090 -6.4565 0.8230 14 7 3.0418 -7.7251 0.8224 15 6 3.0327 -8.5091 1.9186 16 8 2.4161 -8.1630 2.9092 17 6 3.7663 -9.7780 1.9182 18 6 3.8331 -10.6554 2.9640 19 6 4.5914 -11.7698 2.6911 20 17 4.8360 -13.0374 3.8517 21 6 5.1271 -11.8054 1.4647 22 16 4.6936 -10.4195 0.5690 23 6 3.1862 -5.3617 1.4336 24 6 2.4214 -4.0366 1.4342 25 1 -0.4850 0.8400 0.0004 26 1 0.3555 -2.3881 -0.0023 27 1 2.9687 -3.5500 -0.5920 28 1 0.9216 -4.4808 -1.6368 29 1 0.2702 -4.8583 -0.0239 30 1 1.3208 -6.8566 -1.0493 31 1 2.8565 -5.9703 -1.2030 32 1 1.3982 -6.5630 1.4121 33 1 3.5335 -8.0007 0.0329 34 1 3.3388 -10.4906 3.9099 35 1 5.7468 -12.6068 1.0904 36 1 4.0971 -5.2552 0.8445 37 1 3.4447 -5.6320 2.4574 38 1 3.0465 -3.2565 1.8688 39 1 1.5105 -4.1430 2.0233 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026570905.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:37 Heat of formation + Delta-G solvation = -34.563982 kcal Electronic energy + Delta-G solvation = -22464.391298 eV Core-core repulsion = 18944.119125 eV Total energy + Delta-G solvation = -3520.272173 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.21319 -39.58416 -38.82046 -37.02419 -36.38013 -34.72180 -32.60805 -31.69074 -30.98500 -28.92135 -26.34856 -25.35489 -23.68175 -22.99993 -21.93659 -21.14584 -20.43803 -19.70642 -18.99257 -17.61792 -17.05399 -16.96553 -16.58888 -16.28516 -15.75054 -15.37394 -15.10616 -14.99616 -14.89459 -14.48433 -14.25751 -14.02526 -13.84280 -13.46435 -13.15346 -13.08200 -12.83448 -12.47530 -12.45101 -12.39686 -12.30030 -12.14760 -12.02764 -11.90997 -11.66905 -11.47258 -11.24696 -11.17213 -10.83184 -10.26204 -9.98342 -9.49741 -8.97826 -7.92197 -5.20067 -0.71476 0.19202 0.44609 1.02867 1.45816 1.47548 1.49147 1.57315 1.99379 2.02957 2.57675 3.40638 3.58906 3.76083 3.84200 3.89885 3.94614 4.10299 4.28919 4.37495 4.40139 4.48640 4.54578 4.60394 4.65623 4.82282 4.85460 4.90032 5.00761 5.10764 5.13721 5.26187 5.28810 5.39896 5.52201 5.56617 5.65349 6.30702 6.38806 7.05501 7.36096 8.14305 8.36189 9.31477 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.035075 B = 0.002036 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.089776 B =13747.096463 C =13908.966611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.081 4.081 3 Si 0.970 3.030 4 H -0.285 1.285 5 H -0.299 1.299 6 H -0.271 1.271 7 C -0.234 4.234 8 H 0.076 0.924 9 N -0.740 5.740 10 C 0.171 3.829 11 C -0.113 4.113 12 C -0.106 4.106 13 C 0.153 3.847 14 N -0.704 5.704 15 C 0.588 3.412 16 O -0.570 6.570 17 C -0.287 4.287 18 C -0.060 4.060 19 C -0.079 4.079 20 Cl -0.049 7.049 21 C -0.221 4.221 22 S 0.331 5.669 23 C -0.113 4.113 24 C -0.123 4.123 25 H 0.249 0.751 26 H 0.371 0.629 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.412 0.588 34 H 0.149 0.851 35 H 0.208 0.792 36 H 0.079 0.921 37 H 0.048 0.952 38 H 0.041 0.959 39 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.052 -29.802 -1.836 32.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.273 4.273 3 Si 0.800 3.200 4 H -0.213 1.213 5 H -0.225 1.225 6 H -0.196 1.196 7 C -0.366 4.366 8 H 0.094 0.906 9 N -0.379 5.379 10 C 0.063 3.937 11 C -0.152 4.152 12 C -0.145 4.145 13 C 0.048 3.952 14 N -0.355 5.355 15 C 0.375 3.625 16 O -0.451 6.451 17 C -0.408 4.408 18 C -0.094 4.094 19 C -0.119 4.119 20 Cl -0.021 7.021 21 C -0.360 4.360 22 S 0.598 5.402 23 C -0.153 4.153 24 C -0.164 4.164 25 H 0.058 0.942 26 H 0.203 0.797 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.249 0.751 34 H 0.166 0.834 35 H 0.225 0.775 36 H 0.097 0.903 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 13.112 -29.035 -2.550 31.960 hybrid contribution -0.393 0.508 1.883 1.990 sum 12.719 -28.527 -0.667 31.241 Atomic orbital electron populations 1.69818 1.06581 1.25871 1.59959 1.25556 0.96380 1.01075 1.04247 0.85177 0.77648 0.79735 0.77448 1.21251 1.22542 1.19577 1.19622 0.91392 0.85291 1.40309 0.90645 1.42683 1.05463 1.01158 1.88557 1.20510 0.94632 0.85013 0.93505 1.21637 0.98373 0.94042 1.01152 1.21675 1.01982 0.96767 0.94042 1.20943 0.94445 0.81536 0.98231 1.45777 1.52906 1.21020 1.15793 1.17182 0.79638 0.82588 0.83110 1.90851 1.45286 1.74276 1.34704 1.24430 1.12600 1.01481 1.02275 1.20541 0.97427 0.91408 1.00013 1.19501 1.05490 0.93796 0.93110 1.98378 1.95932 1.49366 1.58381 1.25710 1.06446 1.06496 0.97310 1.82816 1.39340 1.08132 1.09947 1.21780 0.99068 0.93849 1.00568 1.22029 0.98995 0.95801 0.99545 0.94186 0.79728 0.93214 0.91232 0.92865 0.89048 0.89066 0.91281 0.75054 0.83361 0.77463 0.90259 0.93358 0.94061 0.94262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.05 13.06 21.65 0.28 -59.77 16 2 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 3 Si 0.97 46.48 29.55 68.60 2.03 48.51 16 4 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 5 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.23 -12.97 9.93 84.03 0.83 -12.14 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 9 N -0.74 -37.13 5.12 -322.95 -1.65 -38.78 16 10 C 0.17 6.48 2.77 44.99 0.12 6.61 16 11 C -0.11 -3.36 5.39 30.59 0.16 -3.20 16 12 C -0.11 -2.17 5.39 30.59 0.16 -2.01 16 13 C 0.15 3.66 2.45 44.99 0.11 3.77 16 14 N -0.70 -13.34 5.07 -446.60 -2.27 -15.61 16 15 C 0.59 14.02 7.75 86.42 0.67 14.69 16 16 O -0.57 -19.09 16.50 -4.37 -0.07 -19.16 16 17 C -0.29 -5.08 6.45 24.08 0.16 -4.93 16 18 C -0.06 -1.11 9.89 21.74 0.21 -0.89 16 19 C -0.08 -1.14 6.25 21.11 0.13 -1.01 16 20 Cl -0.05 -0.71 29.10 -2.72 -0.08 -0.79 16 21 C -0.22 -2.00 10.77 66.83 0.72 -1.28 16 22 S 0.33 2.73 22.15 -56.49 -1.25 1.48 16 23 C -0.11 -3.17 5.49 30.60 0.17 -3.01 16 24 C -0.12 -4.45 5.50 30.59 0.17 -4.28 16 25 H 0.25 15.00 8.31 -92.71 -0.77 14.22 16 26 H 0.37 20.17 7.80 -92.71 -0.72 19.45 16 27 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 28 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 2.03 7.58 -2.39 -0.02 2.01 16 33 H 0.41 4.81 7.72 -92.70 -0.72 4.09 16 34 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 35 H 0.21 0.68 8.06 -2.91 -0.02 0.66 16 36 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -72.25 353.98 0.73 -71.52 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: -0.35 Total: 24.48 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: 4.09 Total: -11.87 kcal Atomic # 7 Polarization: -110.52 SS G_CDS: -3.64 Total: -114.16 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.07 Total: -19.16 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.25 Total: 1.48 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.08 Total: -0.79 kcal Total: -72.25 0.73 -71.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026570905.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.955 kcal (2) G-P(sol) polarization free energy of solvation -72.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds