Wall clock time and date at job start Tue Mar 31 2020 15:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00047 * 2 1 4 4 H 1.48505 * 109.47072 * 269.99611 * 3 2 1 5 5 H 1.48504 * 109.47203 * 29.99421 * 3 2 1 6 6 H 1.48496 * 109.47442 * 149.99978 * 3 2 1 7 7 C 1.38813 * 120.00441 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99699 * 0.02562 * 7 2 1 9 9 N 1.36930 * 120.00538 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00220 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47531 * 155.00236 * 10 9 7 12 12 C 1.52990 * 109.47595 * 179.97438 * 11 10 9 13 13 C 1.53008 * 109.47296 * 300.00188 * 12 11 10 14 14 N 1.46500 * 109.47223 * 179.97438 * 13 12 11 15 15 C 1.34771 * 120.00196 * 154.99602 * 14 13 12 16 16 O 1.21663 * 119.99851 * 0.02562 * 15 14 13 17 17 C 1.47042 * 120.00159 * 180.02562 * 15 14 13 18 18 C 1.44500 * 123.49301 * 0.23135 * 17 15 14 19 19 C 1.32696 * 113.10070 * 180.28390 * 18 17 15 20 20 S 1.75498 * 110.62576 * 359.74523 * 19 18 17 21 21 C 1.36227 * 123.48858 * 180.02562 * 17 15 14 22 22 Cl 1.73599 * 124.61007 * 359.97438 * 21 17 15 23 23 C 1.52998 * 109.47241 * 59.99645 * 13 12 11 24 24 C 1.53000 * 109.46881 * 300.00495 * 23 13 12 25 25 H 0.97000 * 120.00125 * 0.02562 * 1 2 3 26 26 H 0.97001 * 120.00208 * 0.02562 * 9 7 2 27 27 H 1.09000 * 109.47553 * 35.00265 * 10 9 7 28 28 H 1.09005 * 109.47103 * 59.99355 * 11 10 9 29 29 H 1.09000 * 109.46794 * 300.00353 * 11 10 9 30 30 H 1.08999 * 109.47249 * 179.97438 * 12 11 10 31 31 H 1.09005 * 109.46804 * 59.99735 * 12 11 10 32 32 H 1.08997 * 109.46259 * 299.99746 * 13 12 11 33 33 H 0.97002 * 120.00062 * 335.00078 * 14 13 12 34 34 H 1.08004 * 123.45317 * 0.02562 * 18 17 15 35 35 H 1.07997 * 124.68757 * 179.75187 * 19 18 17 36 36 H 1.09000 * 109.46877 * 60.00043 * 23 13 12 37 37 H 1.08993 * 109.47357 * 180.02562 * 23 13 12 38 38 H 1.09000 * 109.46997 * 299.99475 * 24 23 13 39 39 H 1.09008 * 109.46690 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0011 11 6 5.4996 -2.2588 -0.6079 12 6 6.2648 -3.5835 -0.6073 13 6 6.4104 -4.0879 0.8299 14 7 7.1426 -5.3568 0.8304 15 6 7.8248 -5.7407 1.9274 16 8 7.8322 -5.0337 2.9175 17 6 8.5602 -7.0140 1.9277 18 6 8.6066 -7.9083 0.7936 19 6 9.3244 -9.0009 1.0212 20 16 9.9866 -8.9782 2.6463 21 6 9.2718 -7.4708 2.9957 22 17 9.4243 -6.6347 4.5094 23 6 5.0229 -4.3000 1.4389 24 6 4.2577 -2.9751 1.4382 25 1 -0.4850 0.8400 -0.0004 26 1 3.8646 -0.3621 0.0014 27 1 3.5651 -3.2063 -0.5888 28 1 6.0467 -1.5232 -0.0181 29 1 5.3959 -1.8990 -1.6316 30 1 7.2531 -3.4325 -1.0416 31 1 5.7178 -4.3193 -1.1969 32 1 6.9573 -3.3521 1.4193 33 1 7.1365 -5.9206 0.0411 34 1 8.1047 -7.7100 -0.1419 35 1 9.4798 -9.7944 0.3052 36 1 4.4760 -5.0358 0.8493 37 1 5.1266 -4.6589 2.4628 38 1 4.8047 -2.2394 2.0279 39 1 3.2694 -3.1262 1.8726 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026570982.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:17 Heat of formation + Delta-G solvation = -5.674557 kcal Electronic energy + Delta-G solvation = -22836.965656 eV Core-core repulsion = 19317.946223 eV Total energy + Delta-G solvation = -3519.019433 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -40.26884 -38.40173 -37.26661 -36.72659 -34.97205 -33.02412 -31.00549 -30.47348 -30.00417 -27.98566 -25.21504 -23.18986 -22.50429 -21.89097 -20.84792 -19.98056 -19.41953 -18.82935 -17.55205 -17.08072 -16.07108 -15.36381 -15.22333 -14.79388 -14.38950 -14.33276 -13.91712 -13.80270 -13.79049 -13.40052 -13.27327 -12.91982 -12.63412 -12.16008 -11.97026 -11.92700 -11.75068 -11.58649 -11.26623 -11.13426 -10.87048 -10.86372 -10.63632 -10.24180 -10.15455 -9.84200 -9.80410 -9.54890 -9.29098 -9.11350 -8.90022 -8.84834 -7.23401 -5.74378 -3.09451 0.17225 0.58229 1.25273 1.50831 1.83597 3.10127 3.14313 3.39987 3.43320 3.47748 4.26867 4.57539 4.61855 4.69924 4.88255 4.97079 5.11032 5.20910 5.37926 5.48445 5.53835 5.56550 5.59304 5.63610 5.78774 5.80996 5.94971 6.12162 6.19136 6.21096 6.38029 6.47653 6.55916 6.66242 6.91787 7.07455 7.40070 8.02553 8.11843 8.45046 9.23976 9.96755 10.16817 11.44114 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.028897 B = 0.002354 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.713948 B =11892.341726 C =12284.152561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.090 0.910 9 N -0.750 5.750 10 C 0.182 3.818 11 C -0.124 4.124 12 C -0.118 4.118 13 C 0.146 3.854 14 N -0.718 5.718 15 C 0.571 3.429 16 O -0.518 6.518 17 C -0.152 4.152 18 C -0.101 4.101 19 C -0.226 4.226 20 S 0.222 5.778 21 C -0.124 4.124 22 Cl 0.022 6.978 23 C -0.124 4.124 24 C -0.132 4.132 25 H 0.259 0.741 26 H 0.360 0.640 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.396 0.604 34 H 0.157 0.843 35 H 0.177 0.823 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.017 -21.409 1.254 32.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.714 3.286 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.371 4.371 8 H 0.108 0.892 9 N -0.392 5.392 10 C 0.073 3.927 11 C -0.163 4.163 12 C -0.157 4.157 13 C 0.043 3.957 14 N -0.368 5.368 15 C 0.356 3.644 16 O -0.395 6.395 17 C -0.171 4.171 18 C -0.130 4.130 19 C -0.362 4.362 20 S 0.486 5.514 21 C -0.271 4.271 22 Cl 0.051 6.949 23 C -0.163 4.163 24 C -0.173 4.173 25 H 0.069 0.931 26 H 0.193 0.807 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.231 0.769 34 H 0.174 0.826 35 H 0.194 0.806 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 24.675 -21.848 2.913 33.086 hybrid contribution -0.426 1.978 -1.010 2.262 sum 24.249 -19.869 1.903 31.407 Atomic orbital electron populations 1.69699 1.05113 1.25771 1.57758 1.24673 0.95231 0.97209 1.02175 0.86550 0.79276 0.85019 0.77708 1.21153 1.21828 1.20270 1.19077 0.80642 0.94649 1.42689 0.89243 1.42798 1.03992 1.02087 1.90287 1.20217 0.90202 0.89093 0.93233 1.21789 0.96885 0.95863 1.01744 1.21734 1.00509 0.98459 0.94988 1.21132 0.92725 0.84414 0.97456 1.45977 1.51532 1.23566 1.15758 1.17395 0.78934 0.84478 0.83600 1.90878 1.62011 1.53952 1.32661 1.20392 1.04300 0.98749 0.93680 1.21136 1.00311 0.93054 0.98546 1.25542 1.06107 1.03933 1.00593 1.83265 1.48634 1.11694 1.07832 1.25324 1.05891 1.01509 0.94396 1.98429 1.96029 1.75949 1.24464 1.21894 0.94546 0.99154 1.00716 1.22189 1.00017 0.94797 1.00319 0.93118 0.80705 0.92692 0.92079 0.91249 0.91768 0.91350 0.89327 0.76934 0.82583 0.80557 0.92111 0.92134 0.92598 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.55 13.97 55.49 0.78 -28.78 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 3 Si 0.88 22.30 27.74 -169.99 -4.71 17.59 16 4 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 7 C -0.24 -6.77 10.41 -15.06 -0.16 -6.93 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 N -0.75 -17.62 4.92 -53.42 -0.26 -17.88 16 10 C 0.18 3.39 2.77 -67.93 -0.19 3.20 16 11 C -0.12 -1.83 5.39 -26.74 -0.14 -1.97 16 12 C -0.12 -1.35 5.39 -26.73 -0.14 -1.49 16 13 C 0.15 1.85 2.45 -67.93 -0.17 1.68 16 14 N -0.72 -7.57 5.05 -55.00 -0.28 -7.85 16 15 C 0.57 7.24 7.75 -12.69 -0.10 7.14 16 16 O -0.52 -8.47 14.57 5.22 0.08 -8.40 16 17 C -0.15 -1.54 5.98 -104.59 -0.63 -2.17 16 18 C -0.10 -0.66 9.90 -39.00 -0.39 -1.05 16 19 C -0.23 -1.18 11.11 28.84 0.32 -0.86 16 20 S 0.22 1.42 23.02 -107.50 -2.47 -1.06 16 21 C -0.12 -1.25 6.87 30.01 0.21 -1.04 16 22 Cl 0.02 0.26 27.20 -51.86 -1.41 -1.15 16 23 C -0.12 -1.80 5.49 -26.73 -0.15 -1.94 16 24 C -0.13 -2.34 5.50 -26.73 -0.15 -2.49 16 25 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 26 H 0.36 8.37 5.66 -40.82 -0.23 8.14 16 27 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.09 1.30 7.58 -51.93 -0.39 0.91 16 33 H 0.40 2.92 7.15 -40.82 -0.29 2.63 16 34 H 0.16 0.62 7.10 -52.48 -0.37 0.25 16 35 H 0.18 0.40 8.06 -52.49 -0.42 -0.02 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 LS Contribution 346.87 15.07 5.23 5.23 Total: -1.00 -34.01 346.87 -9.94 -43.95 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -5.10 Total: 6.29 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -1.77 Total: -7.94 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: 0.23 Total: -54.51 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.08 Total: -8.40 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.71 Total: 17.59 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.47 Total: -1.06 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -1.41 Total: -1.15 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.01 -9.94 -43.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026570982.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.279 kcal (2) G-P(sol) polarization free energy of solvation -34.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds