Wall clock time and date at job start Tue Mar 31 2020 15:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00047 * 2 1 4 4 H 1.48505 * 109.47072 * 269.99611 * 3 2 1 5 5 H 1.48504 * 109.47203 * 29.99421 * 3 2 1 6 6 H 1.48496 * 109.47442 * 149.99978 * 3 2 1 7 7 C 1.38813 * 120.00441 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99699 * 0.02562 * 7 2 1 9 9 N 1.36930 * 120.00538 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00220 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47531 * 155.00236 * 10 9 7 12 12 C 1.52990 * 109.47595 * 179.97438 * 11 10 9 13 13 C 1.53008 * 109.47296 * 300.00188 * 12 11 10 14 14 N 1.46500 * 109.47223 * 179.97438 * 13 12 11 15 15 C 1.34771 * 120.00196 * 154.99602 * 14 13 12 16 16 O 1.21663 * 119.99851 * 0.02562 * 15 14 13 17 17 C 1.47042 * 120.00159 * 180.02562 * 15 14 13 18 18 C 1.44500 * 123.49301 * 0.23135 * 17 15 14 19 19 C 1.32696 * 113.10070 * 180.28390 * 18 17 15 20 20 S 1.75498 * 110.62576 * 359.74523 * 19 18 17 21 21 C 1.36227 * 123.48858 * 180.02562 * 17 15 14 22 22 Cl 1.73599 * 124.61007 * 359.97438 * 21 17 15 23 23 C 1.52998 * 109.47241 * 59.99645 * 13 12 11 24 24 C 1.53000 * 109.46881 * 300.00495 * 23 13 12 25 25 H 0.97000 * 120.00125 * 0.02562 * 1 2 3 26 26 H 0.97001 * 120.00208 * 0.02562 * 9 7 2 27 27 H 1.09000 * 109.47553 * 35.00265 * 10 9 7 28 28 H 1.09005 * 109.47103 * 59.99355 * 11 10 9 29 29 H 1.09000 * 109.46794 * 300.00353 * 11 10 9 30 30 H 1.08999 * 109.47249 * 179.97438 * 12 11 10 31 31 H 1.09005 * 109.46804 * 59.99735 * 12 11 10 32 32 H 1.08997 * 109.46259 * 299.99746 * 13 12 11 33 33 H 0.97002 * 120.00062 * 335.00078 * 14 13 12 34 34 H 1.08004 * 123.45317 * 0.02562 * 18 17 15 35 35 H 1.07997 * 124.68757 * 179.75187 * 19 18 17 36 36 H 1.09000 * 109.46877 * 60.00043 * 23 13 12 37 37 H 1.08993 * 109.47357 * 180.02562 * 23 13 12 38 38 H 1.09000 * 109.46997 * 299.99475 * 24 23 13 39 39 H 1.09008 * 109.46690 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0011 11 6 5.4996 -2.2588 -0.6079 12 6 6.2648 -3.5835 -0.6073 13 6 6.4104 -4.0879 0.8299 14 7 7.1426 -5.3568 0.8304 15 6 7.8248 -5.7407 1.9274 16 8 7.8322 -5.0337 2.9175 17 6 8.5602 -7.0140 1.9277 18 6 8.6066 -7.9083 0.7936 19 6 9.3244 -9.0009 1.0212 20 16 9.9866 -8.9782 2.6463 21 6 9.2718 -7.4708 2.9957 22 17 9.4243 -6.6347 4.5094 23 6 5.0229 -4.3000 1.4389 24 6 4.2577 -2.9751 1.4382 25 1 -0.4850 0.8400 -0.0004 26 1 3.8646 -0.3621 0.0014 27 1 3.5651 -3.2063 -0.5888 28 1 6.0467 -1.5232 -0.0181 29 1 5.3959 -1.8990 -1.6316 30 1 7.2531 -3.4325 -1.0416 31 1 5.7178 -4.3193 -1.1969 32 1 6.9573 -3.3521 1.4193 33 1 7.1365 -5.9206 0.0411 34 1 8.1047 -7.7100 -0.1419 35 1 9.4798 -9.7944 0.3052 36 1 4.4760 -5.0358 0.8493 37 1 5.1266 -4.6589 2.4628 38 1 4.8047 -2.2394 2.0279 39 1 3.2694 -3.1262 1.8726 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026570982.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:16 Heat of formation + Delta-G solvation = -28.745114 kcal Electronic energy + Delta-G solvation = -22837.966071 eV Core-core repulsion = 19317.946223 eV Total energy + Delta-G solvation = -3520.019848 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.21781 -39.53722 -38.11647 -37.42034 -36.45176 -34.62084 -32.87019 -31.69742 -30.63437 -29.39721 -26.22754 -24.85962 -23.69018 -22.74791 -22.12073 -21.19466 -20.43156 -19.61061 -19.33188 -17.91690 -17.02858 -16.81565 -16.34990 -16.12656 -15.69513 -15.08978 -15.06077 -14.89627 -14.75324 -14.52783 -14.33950 -14.28524 -14.02515 -13.60903 -13.37549 -13.10444 -12.90244 -12.60278 -12.41321 -12.30618 -12.08997 -12.06875 -12.02922 -11.94669 -11.78598 -11.46565 -11.20571 -10.91537 -10.80982 -10.10046 -9.82901 -9.51743 -9.29059 -8.01215 -5.33791 -0.47835 0.01882 0.72363 0.95338 1.19693 1.38136 1.41341 1.48524 2.21258 2.28152 2.49410 3.29688 3.56830 3.69834 3.77775 3.87074 3.99389 4.21591 4.26228 4.33363 4.36577 4.52935 4.59068 4.63472 4.72077 4.86958 4.94947 4.97309 5.11481 5.13781 5.15092 5.24211 5.27185 5.48018 5.52567 5.60960 5.79691 6.23737 6.57471 7.09961 7.24844 7.87435 8.05862 9.20563 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.028897 B = 0.002354 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.713948 B =11892.341726 C =12284.152561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.068 4.068 3 Si 0.955 3.045 4 H -0.275 1.275 5 H -0.299 1.299 6 H -0.255 1.255 7 C -0.225 4.225 8 H 0.056 0.944 9 N -0.754 5.754 10 C 0.175 3.825 11 C -0.117 4.117 12 C -0.106 4.106 13 C 0.154 3.846 14 N -0.701 5.701 15 C 0.565 3.435 16 O -0.565 6.565 17 C -0.168 4.168 18 C -0.108 4.108 19 C -0.209 4.209 20 S 0.260 5.740 21 C -0.156 4.156 22 Cl -0.007 7.007 23 C -0.113 4.113 24 C -0.125 4.125 25 H 0.257 0.743 26 H 0.364 0.636 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.416 0.584 34 H 0.186 0.814 35 H 0.214 0.786 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.046 0.954 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.962 -23.100 -0.922 35.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.259 4.259 3 Si 0.783 3.217 4 H -0.201 1.201 5 H -0.226 1.226 6 H -0.179 1.179 7 C -0.356 4.356 8 H 0.074 0.926 9 N -0.396 5.396 10 C 0.068 3.932 11 C -0.156 4.156 12 C -0.144 4.144 13 C 0.050 3.950 14 N -0.353 5.353 15 C 0.352 3.648 16 O -0.445 6.445 17 C -0.188 4.188 18 C -0.136 4.136 19 C -0.345 4.345 20 S 0.525 5.475 21 C -0.303 4.303 22 Cl 0.022 6.978 23 C -0.152 4.152 24 C -0.165 4.165 25 H 0.065 0.935 26 H 0.197 0.803 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.254 0.746 34 H 0.203 0.797 35 H 0.231 0.769 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 27.684 -23.608 0.702 36.390 hybrid contribution -1.342 2.309 -0.324 2.691 sum 26.342 -21.298 0.378 33.877 Atomic orbital electron populations 1.69885 1.07133 1.26552 1.60142 1.25506 0.96117 1.01260 1.03030 0.85404 0.78491 0.79670 0.78178 1.20065 1.22635 1.17945 1.19037 0.82747 0.93300 1.40538 0.92598 1.42855 1.02432 1.04153 1.90184 1.20479 0.92159 0.86922 0.93662 1.21698 0.94244 0.98021 1.01591 1.21657 1.01807 0.96855 0.94088 1.20873 0.91091 0.85064 0.98017 1.45732 1.50464 1.22955 1.16134 1.17866 0.78750 0.85048 0.83173 1.90856 1.63695 1.55552 1.34384 1.20465 1.04670 0.98397 0.95310 1.21336 1.01189 0.92633 0.98434 1.26032 1.04132 1.04095 1.00205 1.83173 1.47115 1.08713 1.08514 1.25703 1.07576 1.03365 0.93640 1.98410 1.96258 1.76903 1.26223 1.21759 0.95765 0.97259 1.00427 1.22017 0.98618 0.96514 0.99399 0.93467 0.80276 0.93321 0.92077 0.90467 0.88857 0.89336 0.91394 0.74633 0.79726 0.76875 0.90805 0.93673 0.93525 0.94623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.21 13.97 21.65 0.30 -63.91 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 3 Si 0.96 46.33 27.74 68.60 1.90 48.23 16 4 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 5 H -0.30 -14.82 7.11 99.48 0.71 -14.12 16 6 H -0.25 -11.28 6.52 99.48 0.65 -10.63 16 7 C -0.23 -12.94 10.41 84.03 0.87 -12.07 16 8 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 9 N -0.75 -35.22 4.92 -322.94 -1.59 -36.81 16 10 C 0.18 6.42 2.77 44.99 0.12 6.55 16 11 C -0.12 -3.14 5.39 30.59 0.16 -2.98 16 12 C -0.11 -2.02 5.39 30.59 0.16 -1.86 16 13 C 0.15 3.62 2.45 44.99 0.11 3.73 16 14 N -0.70 -13.13 5.05 -446.15 -2.26 -15.38 16 15 C 0.57 13.79 7.75 86.55 0.67 14.46 16 16 O -0.56 -18.84 14.57 -4.23 -0.06 -18.90 16 17 C -0.17 -3.12 5.98 -19.84 -0.12 -3.24 16 18 C -0.11 -1.01 9.90 22.70 0.22 -0.78 16 19 C -0.21 -1.26 11.11 66.65 0.74 -0.52 16 20 S 0.26 2.67 23.02 -56.49 -1.30 1.37 16 21 C -0.16 -2.99 6.87 67.35 0.46 -2.52 16 22 Cl -0.01 -0.16 27.20 -2.72 -0.07 -0.23 16 23 C -0.11 -3.22 5.49 30.59 0.17 -3.05 16 24 C -0.12 -4.50 5.50 30.60 0.17 -4.33 16 25 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 26 H 0.36 16.39 5.66 -92.71 -0.52 15.87 16 27 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 28 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 29 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.07 1.94 7.58 -2.39 -0.02 1.92 16 33 H 0.42 4.50 7.15 -92.71 -0.66 3.84 16 34 H 0.19 0.52 7.10 -2.91 -0.02 0.50 16 35 H 0.21 -0.30 8.06 -2.91 -0.02 -0.33 16 36 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 Total: -1.00 -78.55 346.87 0.99 -77.56 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -0.16 Total: 18.31 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: 4.22 Total: -10.22 kcal Atomic # 7 Polarization: -112.57 SS G_CDS: -3.54 Total: -116.11 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.06 Total: -18.90 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.90 Total: 48.23 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -1.30 Total: 1.37 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -0.07 Total: -0.23 kcal Total: -78.55 0.99 -77.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026570982.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.810 kcal (2) G-P(sol) polarization free energy of solvation -78.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds