Wall clock time and date at job start Tue Mar 31 2020 15:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00232 * 2 1 4 4 H 1.48494 * 109.47486 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47028 * 299.99919 * 3 2 1 6 6 H 1.48506 * 109.47052 * 59.99605 * 3 2 1 7 7 C 1.38811 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99682 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00254 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00287 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46883 * 85.00233 * 10 9 7 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47060 * 300.00449 * 12 11 10 14 14 N 1.46499 * 109.46840 * 180.02562 * 13 12 11 15 15 C 1.34782 * 120.00074 * 155.00031 * 14 13 12 16 16 O 1.21638 * 119.99684 * 359.97438 * 15 14 13 17 17 C 1.47180 * 120.00026 * 180.02562 * 15 14 13 18 18 C 1.35974 * 123.45702 * 0.02562 * 17 15 14 19 19 S 1.70442 * 110.84664 * 179.97438 * 18 17 15 20 20 C 1.75509 * 92.45370 * 359.97438 * 19 18 17 21 21 Cl 1.73607 * 124.71610 * 179.97438 * 20 19 18 22 22 C 1.32886 * 110.56079 * 359.75651 * 20 19 18 23 23 C 1.52996 * 109.47328 * 60.00126 * 13 12 11 24 24 C 1.52997 * 109.47417 * 205.00318 * 10 9 7 25 25 H 0.97004 * 119.99701 * 0.02562 * 1 2 3 26 26 H 0.97003 * 120.00089 * 0.02562 * 9 7 2 27 27 H 1.09001 * 109.46891 * 325.00667 * 10 9 7 28 28 H 1.08998 * 109.46505 * 59.99948 * 11 10 9 29 29 H 1.08996 * 109.46884 * 300.00829 * 11 10 9 30 30 H 1.09002 * 109.47153 * 180.02562 * 12 11 10 31 31 H 1.09001 * 109.46832 * 60.00321 * 12 11 10 32 32 H 1.09001 * 109.47194 * 299.99650 * 13 12 11 33 33 H 0.97002 * 120.00427 * 334.99530 * 14 13 12 34 34 H 1.07999 * 124.57853 * 359.97438 * 18 17 15 35 35 H 1.08003 * 123.47345 * 180.21765 * 22 20 19 36 36 H 1.08992 * 109.47554 * 59.99639 * 23 13 12 37 37 H 1.09004 * 109.47108 * 179.97438 * 23 13 12 38 38 H 1.09002 * 109.47045 * 60.00127 * 24 10 9 39 39 H 1.09001 * 109.47375 * 300.00052 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 2.4229 -4.0363 1.4350 12 6 3.1883 -5.3610 1.4338 13 6 2.3112 -6.4563 0.8240 14 7 3.0440 -7.7249 0.8235 15 6 2.3703 -8.8923 0.8232 16 8 1.1540 -8.8925 0.8240 17 6 3.1065 -10.1667 0.8233 18 6 4.4638 -10.2484 0.8240 19 16 4.9736 -11.8748 0.8245 20 6 3.3229 -12.4710 0.8245 21 17 2.8776 -14.1490 0.8242 22 6 2.4613 -11.4592 0.8294 23 6 1.9464 -6.0769 -0.6126 24 6 1.1803 -4.7519 -0.6112 25 1 -0.4850 0.8401 -0.0004 26 1 0.3555 -2.3880 -0.0005 27 1 2.9683 -3.5503 -0.5917 28 1 1.5125 -4.1427 2.0249 29 1 3.0480 -3.2561 1.8692 30 1 3.4479 -5.6316 2.4573 31 1 4.0987 -5.2540 0.8439 32 1 1.4009 -6.5633 1.4139 33 1 4.0140 -7.7247 0.8232 34 1 5.1291 -9.3976 0.8243 35 1 1.3892 -11.5898 0.8338 36 1 2.8566 -5.9699 -1.2025 37 1 1.3219 -6.8575 -1.0471 38 1 0.9204 -4.4815 -1.6346 39 1 0.2700 -4.8584 -0.0211 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026571560.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:26 Heat of formation + Delta-G solvation = -14.589867 kcal Electronic energy + Delta-G solvation = -22461.050480 eV Core-core repulsion = 18941.644450 eV Total energy + Delta-G solvation = -3519.406030 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -40.30660 -38.36138 -37.53968 -36.64099 -34.92254 -33.11879 -30.95994 -30.42090 -29.83156 -27.37789 -25.36096 -23.65863 -22.34488 -22.03617 -20.82598 -19.98549 -19.30065 -18.66923 -17.40476 -17.01953 -16.14753 -15.38635 -15.21397 -15.02768 -14.28656 -14.12144 -14.04553 -13.84129 -13.71456 -13.55361 -13.14579 -12.85372 -12.62794 -12.25541 -12.07028 -11.98300 -11.80678 -11.47328 -11.24633 -10.90811 -10.81931 -10.75552 -10.71406 -10.28556 -10.13184 -10.07380 -9.72598 -9.56382 -9.38613 -9.13373 -8.91918 -8.85420 -6.94267 -5.75597 -3.04198 0.15293 0.53049 1.22911 1.44000 1.67870 3.02204 3.10477 3.42939 3.48199 3.50756 4.29151 4.57901 4.61012 4.75916 4.91448 5.03257 5.14456 5.26167 5.32056 5.52939 5.55840 5.62951 5.64353 5.73070 5.82420 5.86450 6.02875 6.23740 6.26554 6.29604 6.43571 6.58302 6.60814 6.69523 6.97650 7.12015 7.35390 7.70705 8.05463 8.43168 9.54097 10.13217 10.47644 11.47173 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.042338 B = 0.001958 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.185575 B =14294.091194 C =14705.520104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.016 4.016 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.177 3.823 11 C -0.132 4.132 12 C -0.122 4.122 13 C 0.146 3.854 14 N -0.718 5.718 15 C 0.575 3.425 16 O -0.530 6.530 17 C -0.141 4.141 18 C -0.210 4.210 19 S 0.237 5.763 20 C -0.174 4.174 21 Cl -0.010 7.010 22 C -0.067 4.067 23 C -0.121 4.121 24 C -0.121 4.121 25 H 0.254 0.746 26 H 0.384 0.616 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.396 0.604 34 H 0.179 0.821 35 H 0.164 0.836 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.985 -27.909 2.203 30.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.212 4.212 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 C -0.173 4.173 12 C -0.160 4.160 13 C 0.042 3.958 14 N -0.368 5.368 15 C 0.360 3.640 16 O -0.407 6.407 17 C -0.159 4.159 18 C -0.348 4.348 19 S 0.501 5.499 20 C -0.317 4.317 21 Cl 0.019 6.981 22 C -0.098 4.098 23 C -0.160 4.160 24 C -0.160 4.160 25 H 0.064 0.936 26 H 0.217 0.783 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.230 0.770 34 H 0.196 0.804 35 H 0.181 0.819 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.588 -28.602 2.192 31.326 hybrid contribution -0.776 1.564 0.053 1.747 sum 11.812 -27.038 2.245 29.591 Atomic orbital electron populations 1.69676 1.05087 1.25481 1.57835 1.24753 0.95517 0.97685 1.03197 0.86141 0.78738 0.84283 0.77167 1.20607 1.21927 1.21928 1.19281 0.90971 0.84157 1.42383 0.91178 1.42449 1.05844 0.99790 1.88492 1.20240 0.94393 0.86074 0.92587 1.22227 0.99740 0.94052 1.01250 1.21818 0.98672 0.95471 1.00072 1.21169 0.95928 0.81059 0.97604 1.46019 1.10087 1.05778 1.74899 1.17468 0.87039 0.82828 0.76688 1.90830 1.13107 1.87364 1.49413 1.20128 0.92097 0.94398 1.09276 1.25815 0.99085 1.03624 1.06293 1.83201 1.02743 0.94679 1.69258 1.25106 0.98900 0.90685 1.17002 1.98386 1.91982 1.10530 1.97243 1.21186 1.01657 0.88612 0.98375 1.21852 1.00556 0.97950 0.95644 1.21773 0.98968 0.93564 1.01702 0.93587 0.78263 0.93619 0.92330 0.91512 0.92186 0.91832 0.89195 0.77003 0.80379 0.81856 0.92025 0.91942 0.91567 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.22 13.06 55.49 0.72 -27.50 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 9 N -0.73 -18.00 5.12 -53.42 -0.27 -18.27 16 10 C 0.18 3.40 2.77 -67.93 -0.19 3.21 16 11 C -0.13 -2.22 5.50 -26.73 -0.15 -2.37 16 12 C -0.12 -1.52 5.39 -26.73 -0.14 -1.67 16 13 C 0.15 1.87 2.45 -67.93 -0.17 1.70 16 14 N -0.72 -7.45 5.05 -54.96 -0.28 -7.73 16 15 C 0.58 7.01 7.76 -12.63 -0.10 6.92 16 16 O -0.53 -8.59 16.46 5.24 0.09 -8.50 16 17 C -0.14 -1.33 5.98 -104.63 -0.63 -1.96 16 18 C -0.21 -1.35 10.38 29.92 0.31 -1.03 16 19 S 0.24 1.37 23.02 -107.50 -2.47 -1.11 16 20 C -0.17 -1.38 7.01 28.89 0.20 -1.18 16 21 Cl -0.01 -0.07 29.27 -51.86 -1.52 -1.59 16 22 C -0.07 -0.63 10.04 -38.98 -0.39 -1.03 16 23 C -0.12 -1.67 5.50 -26.71 -0.15 -1.82 16 24 C -0.12 -2.03 5.39 -26.71 -0.14 -2.17 16 25 H 0.25 7.44 8.31 -40.82 -0.34 7.11 16 26 H 0.38 10.22 7.80 -40.82 -0.32 9.91 16 27 H 0.05 0.89 8.08 -51.93 -0.42 0.48 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 1.35 7.57 -51.93 -0.39 0.95 16 33 H 0.40 2.85 7.10 -40.82 -0.29 2.56 16 34 H 0.18 0.64 7.01 -52.49 -0.37 0.28 16 35 H 0.16 1.58 8.06 -52.48 -0.42 1.16 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 353.34 15.07 5.32 5.32 Total: -1.00 -32.21 353.34 -10.36 -42.57 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -5.14 Total: 8.12 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -1.78 Total: -8.58 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.17 Total: -53.50 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.09 Total: -8.50 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.47 Total: -1.11 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.52 Total: -1.59 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.21 -10.36 -42.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026571560.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.978 kcal (2) G-P(sol) polarization free energy of solvation -32.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds