Wall clock time and date at job start Tue Mar 31 2020 15:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00232 * 2 1 4 4 H 1.48494 * 109.47486 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47028 * 299.99919 * 3 2 1 6 6 H 1.48506 * 109.47052 * 59.99605 * 3 2 1 7 7 C 1.38811 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99682 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00254 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00287 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46883 * 85.00233 * 10 9 7 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47060 * 300.00449 * 12 11 10 14 14 N 1.46499 * 109.46840 * 180.02562 * 13 12 11 15 15 C 1.34782 * 120.00074 * 155.00031 * 14 13 12 16 16 O 1.21638 * 119.99684 * 359.97438 * 15 14 13 17 17 C 1.47180 * 120.00026 * 180.02562 * 15 14 13 18 18 C 1.35974 * 123.45702 * 0.02562 * 17 15 14 19 19 S 1.70442 * 110.84664 * 179.97438 * 18 17 15 20 20 C 1.75509 * 92.45370 * 359.97438 * 19 18 17 21 21 Cl 1.73607 * 124.71610 * 179.97438 * 20 19 18 22 22 C 1.32886 * 110.56079 * 359.75651 * 20 19 18 23 23 C 1.52996 * 109.47328 * 60.00126 * 13 12 11 24 24 C 1.52997 * 109.47417 * 205.00318 * 10 9 7 25 25 H 0.97004 * 119.99701 * 0.02562 * 1 2 3 26 26 H 0.97003 * 120.00089 * 0.02562 * 9 7 2 27 27 H 1.09001 * 109.46891 * 325.00667 * 10 9 7 28 28 H 1.08998 * 109.46505 * 59.99948 * 11 10 9 29 29 H 1.08996 * 109.46884 * 300.00829 * 11 10 9 30 30 H 1.09002 * 109.47153 * 180.02562 * 12 11 10 31 31 H 1.09001 * 109.46832 * 60.00321 * 12 11 10 32 32 H 1.09001 * 109.47194 * 299.99650 * 13 12 11 33 33 H 0.97002 * 120.00427 * 334.99530 * 14 13 12 34 34 H 1.07999 * 124.57853 * 359.97438 * 18 17 15 35 35 H 1.08003 * 123.47345 * 180.21765 * 22 20 19 36 36 H 1.08992 * 109.47554 * 59.99639 * 23 13 12 37 37 H 1.09004 * 109.47108 * 179.97438 * 23 13 12 38 38 H 1.09002 * 109.47045 * 60.00127 * 24 10 9 39 39 H 1.09001 * 109.47375 * 300.00052 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 2.4229 -4.0363 1.4350 12 6 3.1883 -5.3610 1.4338 13 6 2.3112 -6.4563 0.8240 14 7 3.0440 -7.7249 0.8235 15 6 2.3703 -8.8923 0.8232 16 8 1.1540 -8.8925 0.8240 17 6 3.1065 -10.1667 0.8233 18 6 4.4638 -10.2484 0.8240 19 16 4.9736 -11.8748 0.8245 20 6 3.3229 -12.4710 0.8245 21 17 2.8776 -14.1490 0.8242 22 6 2.4613 -11.4592 0.8294 23 6 1.9464 -6.0769 -0.6126 24 6 1.1803 -4.7519 -0.6112 25 1 -0.4850 0.8401 -0.0004 26 1 0.3555 -2.3880 -0.0005 27 1 2.9683 -3.5503 -0.5917 28 1 1.5125 -4.1427 2.0249 29 1 3.0480 -3.2561 1.8692 30 1 3.4479 -5.6316 2.4573 31 1 4.0987 -5.2540 0.8439 32 1 1.4009 -6.5633 1.4139 33 1 4.0140 -7.7247 0.8232 34 1 5.1291 -9.3976 0.8243 35 1 1.3892 -11.5898 0.8338 36 1 2.8566 -5.9699 -1.2025 37 1 1.3219 -6.8575 -1.0471 38 1 0.9204 -4.4815 -1.6346 39 1 0.2700 -4.8584 -0.0211 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026571560.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:25 Heat of formation + Delta-G solvation = -35.295558 kcal Electronic energy + Delta-G solvation = -22461.948346 eV Core-core repulsion = 18941.644450 eV Total energy + Delta-G solvation = -3520.303896 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.25178 -39.48983 -38.30017 -37.33124 -36.37175 -34.68624 -32.56577 -31.68392 -30.74267 -28.79384 -26.25519 -25.36578 -23.62052 -23.06763 -21.94582 -21.16390 -20.25446 -19.38458 -19.04190 -18.11934 -17.21143 -16.78464 -16.24359 -16.05438 -15.69647 -15.36314 -15.13244 -14.92838 -14.65506 -14.58441 -14.42748 -14.01431 -13.75153 -13.58493 -13.16431 -13.07260 -12.84536 -12.66085 -12.62036 -12.40570 -12.19178 -12.01792 -11.97377 -11.82940 -11.70660 -11.60927 -11.16916 -10.94708 -10.85685 -10.12653 -9.94666 -9.48671 -8.97947 -7.91737 -5.20095 -0.42445 -0.00195 0.66953 0.71524 1.10335 1.48230 1.49050 1.58942 2.14182 2.26004 2.58096 3.41495 3.71492 3.81130 3.82396 3.89836 3.96859 4.15887 4.26028 4.39570 4.40954 4.51187 4.55436 4.60688 4.67295 4.72150 4.86917 4.95884 5.01561 5.12913 5.14024 5.24610 5.30626 5.46085 5.54352 5.56560 5.67200 6.30738 6.54094 7.20787 7.35826 8.13668 8.35880 9.32421 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.042338 B = 0.001958 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.185575 B =14294.091194 C =14705.520104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.083 4.083 3 Si 0.972 3.028 4 H -0.262 1.262 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.231 4.231 8 H 0.080 0.920 9 N -0.741 5.741 10 C 0.172 3.828 11 C -0.124 4.124 12 C -0.107 4.107 13 C 0.153 3.847 14 N -0.701 5.701 15 C 0.575 3.425 16 O -0.582 6.582 17 C -0.172 4.172 18 C -0.189 4.189 19 S 0.307 5.693 20 C -0.189 4.189 21 Cl -0.011 7.011 22 C -0.085 4.085 23 C -0.110 4.110 24 C -0.113 4.113 25 H 0.249 0.751 26 H 0.369 0.631 27 H 0.050 0.950 28 H 0.041 0.959 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.416 0.584 34 H 0.213 0.787 35 H 0.146 0.854 36 H 0.082 0.918 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.943 -29.193 2.326 33.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.275 4.275 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.224 1.224 6 H -0.224 1.224 7 C -0.363 4.363 8 H 0.098 0.902 9 N -0.380 5.380 10 C 0.064 3.936 11 C -0.165 4.165 12 C -0.145 4.145 13 C 0.049 3.951 14 N -0.353 5.353 15 C 0.362 3.638 16 O -0.463 6.463 17 C -0.190 4.190 18 C -0.328 4.328 19 S 0.571 5.429 20 C -0.332 4.332 21 Cl 0.017 6.983 22 C -0.116 4.116 23 C -0.149 4.149 24 C -0.152 4.152 25 H 0.058 0.942 26 H 0.201 0.799 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.254 0.746 34 H 0.230 0.770 35 H 0.164 0.836 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 16.637 -29.939 2.319 34.330 hybrid contribution -1.926 1.825 0.005 2.653 sum 14.711 -28.115 2.325 31.816 Atomic orbital electron populations 1.69844 1.06730 1.25780 1.60138 1.25592 0.96367 1.01209 1.04338 0.85081 0.78423 0.79924 0.76411 1.18615 1.22396 1.22389 1.19692 0.91521 0.85105 1.40014 0.90215 1.42719 1.05438 1.01262 1.88616 1.20500 0.94247 0.84518 0.94310 1.22012 0.99426 0.96310 0.98726 1.21674 0.98511 0.92393 1.01934 1.20872 0.95550 0.82355 0.96364 1.45727 1.10941 1.04367 1.74221 1.17868 0.86567 0.83929 0.75462 1.90806 1.15475 1.88095 1.51932 1.19791 0.93154 0.92844 1.13197 1.26257 0.98196 1.05627 1.02746 1.83066 0.99853 0.93030 1.66915 1.25290 1.00514 0.90465 1.16923 1.98384 1.92261 1.10401 1.97235 1.21127 1.01360 0.89479 0.99673 1.21742 1.00749 0.95628 0.96794 1.21647 0.98514 0.94560 1.00500 0.94246 0.79942 0.93204 0.94005 0.92799 0.90050 0.89269 0.91761 0.74622 0.76998 0.83587 0.89979 0.92693 0.92610 0.93404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.52 13.06 21.65 0.28 -60.23 16 2 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 3 Si 0.97 46.12 29.55 68.60 2.03 48.15 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 7 C -0.23 -12.70 9.93 84.03 0.83 -11.87 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.74 -37.42 5.12 -322.93 -1.65 -39.07 16 10 C 0.17 6.55 2.77 44.99 0.12 6.67 16 11 C -0.12 -4.07 5.50 30.60 0.17 -3.90 16 12 C -0.11 -2.36 5.39 30.59 0.16 -2.19 16 13 C 0.15 3.68 2.45 44.99 0.11 3.79 16 14 N -0.70 -12.77 5.05 -446.03 -2.25 -15.02 16 15 C 0.58 13.49 7.76 86.59 0.67 14.16 16 16 O -0.58 -19.44 16.46 -4.15 -0.07 -19.51 16 17 C -0.17 -2.97 5.98 -19.87 -0.12 -3.09 16 18 C -0.19 -1.70 10.38 67.29 0.70 -1.00 16 19 S 0.31 2.44 23.02 -56.49 -1.30 1.14 16 20 C -0.19 -2.73 7.01 66.64 0.47 -2.26 16 21 Cl -0.01 -0.16 29.27 -2.72 -0.08 -0.24 16 22 C -0.09 -1.58 10.04 22.68 0.23 -1.35 16 23 C -0.11 -2.91 5.50 30.61 0.17 -2.74 16 24 C -0.11 -3.82 5.39 30.61 0.17 -3.66 16 25 H 0.25 15.01 8.31 -92.70 -0.77 14.24 16 26 H 0.37 20.45 7.80 -92.71 -0.72 19.73 16 27 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 28 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.06 1.93 7.57 -2.39 -0.02 1.91 16 33 H 0.42 4.13 7.10 -92.71 -0.66 3.47 16 34 H 0.21 0.31 7.01 -2.91 -0.02 0.29 16 35 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 36 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -72.89 353.34 0.81 -72.08 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: -0.29 Total: 24.50 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: 4.15 Total: -11.79 kcal Atomic # 7 Polarization: -110.70 SS G_CDS: -3.62 Total: -114.32 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.07 Total: -19.51 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -1.30 Total: 1.14 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -0.08 Total: -0.24 kcal Total: -72.89 0.81 -72.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026571560.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.784 kcal (2) G-P(sol) polarization free energy of solvation -72.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds