Wall clock time and date at job start Tue Mar 31 2020 15:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 120.00136 * 2 1 4 4 H 1.48497 * 109.46751 * 274.99176 * 3 2 1 5 5 H 1.48505 * 109.46923 * 34.99093 * 3 2 1 6 6 H 1.48498 * 109.47295 * 154.99025 * 3 2 1 7 7 C 1.38815 * 120.00124 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99666 * 212.40675 * 7 2 1 9 9 N 1.36936 * 120.00105 * 32.40719 * 7 2 1 10 10 C 1.44572 * 118.64177 * 2.60958 * 9 7 2 11 11 C 1.54865 * 109.60532 * 270.70532 * 10 9 7 12 12 C 1.47094 * 110.32138 * 288.73405 * 11 10 9 13 13 C 1.52726 * 114.22415 * 62.83053 * 12 11 10 14 14 C 1.50872 * 109.27787 * 274.83074 * 13 12 11 15 15 H 1.09001 * 109.36650 * 331.92197 * 14 13 12 16 16 N 1.46502 * 109.36840 * 212.18274 * 14 13 12 17 17 C 1.34775 * 119.99893 * 154.46899 * 16 14 13 18 18 O 1.21713 * 120.00293 * 0.27345 * 17 16 14 19 19 C 1.46441 * 119.99821 * 180.27808 * 17 16 14 20 20 S 1.75825 * 125.46170 * 359.68778 * 19 17 16 21 21 C 1.70608 * 91.58713 * 179.97438 * 20 19 17 22 22 C 1.33773 * 111.00110 * 0.32731 * 21 20 19 23 23 C 1.36791 * 125.46430 * 180.02562 * 19 17 16 24 24 Cl 1.73601 * 123.37794 * 359.97303 * 23 19 17 25 25 C 1.47608 * 118.64282 * 182.59249 * 9 7 2 26 26 H 0.96998 * 120.00397 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.45012 * 30.74704 * 10 9 7 28 28 H 1.09007 * 109.44670 * 150.66363 * 10 9 7 29 29 H 1.08994 * 109.32428 * 48.99733 * 11 10 9 30 30 H 1.09007 * 109.32614 * 168.64855 * 11 10 9 31 31 H 1.08996 * 108.51255 * 184.05572 * 12 11 10 32 32 H 1.08995 * 108.51245 * 301.70425 * 12 11 10 33 33 H 1.09006 * 109.44464 * 154.94092 * 13 12 11 34 34 H 1.09003 * 109.61423 * 34.82590 * 13 12 11 35 35 H 0.97002 * 120.00231 * 334.74124 * 16 14 13 36 36 H 1.08002 * 124.50091 * 180.02562 * 21 20 19 37 37 H 1.07997 * 122.45537 * 179.72377 * 22 21 20 38 38 H 1.08995 * 108.94904 * 17.20167 * 25 9 7 39 39 H 1.08995 * 108.94399 * 258.57691 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3921 2.1073 -1.3948 5 1 1.5043 2.6199 0.8029 6 1 3.5965 1.4120 0.5919 7 6 2.0102 -1.2022 0.0005 8 1 2.9641 -1.2747 0.5019 9 7 1.4855 -2.2960 -0.6345 10 6 0.2346 -2.1512 -1.3447 11 6 -0.9451 -2.4360 -0.3826 12 6 -1.0085 -3.8703 -0.0626 13 6 0.2185 -4.4028 0.6745 14 6 1.2821 -4.7713 -0.3300 15 1 0.8089 -5.0508 -1.2714 16 7 2.0588 -5.9047 0.1784 17 6 2.6870 -6.7310 -0.6813 18 8 2.6131 -6.5327 -1.8799 19 6 3.4583 -7.8674 -0.1733 20 16 3.6668 -8.2823 1.5225 21 6 4.6307 -9.6321 1.1227 22 6 4.7787 -9.7399 -0.2024 23 6 4.1375 -8.7726 -0.9418 24 17 4.1864 -8.7071 -2.6759 25 6 2.2207 -3.5742 -0.5661 26 1 -0.4850 0.8400 -0.0004 27 1 0.1515 -1.1350 -1.7300 28 1 0.2046 -2.8572 -2.1747 29 1 -0.8062 -1.8671 0.5367 30 1 -1.8786 -2.1331 -0.8569 31 1 -1.8885 -4.0485 0.5553 32 1 -1.1214 -4.4277 -0.9925 33 1 -0.0590 -5.2855 1.2507 34 1 0.6031 -3.6356 1.3466 35 1 2.1178 -6.0627 1.1337 36 1 5.0676 -10.3069 1.8439 37 1 5.3592 -10.5281 -0.6585 38 1 2.9425 -3.5241 0.2491 39 1 2.7573 -3.7243 -1.5029 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034226221.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:49 Heat of formation + Delta-G solvation = 27.916678 kcal Electronic energy + Delta-G solvation = -23733.714667 eV Core-core repulsion = 20216.151859 eV Total energy + Delta-G solvation = -3517.562808 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -39.85331 -38.32949 -37.38217 -36.17118 -34.65445 -33.09802 -31.36290 -30.44446 -29.14450 -26.17816 -25.24787 -24.20852 -22.99750 -21.39024 -20.14928 -19.55475 -19.15433 -18.50123 -16.66888 -16.44725 -15.84235 -15.55009 -15.12386 -14.71814 -14.20762 -13.92428 -13.77548 -13.59739 -13.35614 -13.27011 -13.05681 -12.63540 -12.09362 -12.00632 -11.63291 -11.54952 -11.48101 -11.12514 -10.99554 -10.89468 -10.63418 -10.32020 -10.20736 -9.94334 -9.75064 -9.70927 -9.51061 -9.23949 -9.20619 -8.78516 -8.70017 -8.18293 -6.87139 -5.76436 -2.99480 0.13143 0.91857 1.39782 1.95569 2.31106 3.17604 3.24122 3.43181 3.52312 3.54021 4.50945 4.57553 4.76424 4.86342 5.27368 5.31502 5.37766 5.51330 5.59998 5.65725 5.67919 5.76394 6.09256 6.09823 6.24681 6.47429 6.52770 6.70319 6.78454 6.86906 6.94018 7.12121 7.22304 7.29427 7.62912 7.71075 7.81775 8.20150 8.29261 8.37862 9.29550 9.92842 10.33259 11.24515 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.018765 B = 0.003183 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.791430 B = 8794.696022 C = 8869.714351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.005 3.995 3 Si 0.882 3.118 4 H -0.290 1.290 5 H -0.295 1.295 6 H -0.282 1.282 7 C -0.258 4.258 8 H 0.073 0.927 9 N -0.592 5.592 10 C 0.180 3.820 11 C -0.127 4.127 12 C -0.102 4.102 13 C -0.114 4.114 14 C 0.130 3.870 15 H 0.083 0.917 16 N -0.715 5.715 17 C 0.580 3.420 18 O -0.507 6.507 19 C -0.256 4.256 20 S 0.241 5.759 21 C -0.228 4.228 22 C -0.142 4.142 23 C 0.012 3.988 24 Cl -0.014 7.014 25 C 0.147 3.853 26 H 0.251 0.749 27 H 0.076 0.924 28 H 0.006 0.994 29 H 0.103 0.897 30 H 0.033 0.967 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.048 0.952 34 H 0.083 0.917 35 H 0.392 0.608 36 H 0.177 0.823 37 H 0.153 0.847 38 H 0.049 0.951 39 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.635 -20.266 4.245 21.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.193 4.193 3 Si 0.712 3.288 4 H -0.217 1.217 5 H -0.222 1.222 6 H -0.207 1.207 7 C -0.387 4.387 8 H 0.091 0.909 9 N -0.314 5.314 10 C 0.054 3.946 11 C -0.167 4.167 12 C -0.141 4.141 13 C -0.152 4.152 14 C 0.026 3.974 15 H 0.101 0.899 16 N -0.366 5.366 17 C 0.365 3.635 18 O -0.384 6.384 19 C -0.378 4.378 20 S 0.507 5.493 21 C -0.366 4.366 22 C -0.173 4.173 23 C -0.031 4.031 24 Cl 0.015 6.985 25 C 0.019 3.981 26 H 0.061 0.939 27 H 0.094 0.906 28 H 0.024 0.976 29 H 0.121 0.879 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.226 0.774 36 H 0.194 0.806 37 H 0.171 0.829 38 H 0.068 0.932 39 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 4.964 -19.357 4.573 20.500 hybrid contribution 1.067 -0.044 -0.860 1.371 sum 6.030 -19.401 3.713 20.653 Atomic orbital electron populations 1.70346 1.05010 1.24993 1.52494 1.24606 0.95054 0.97753 1.01886 0.86555 0.79818 0.84817 0.77597 1.21710 1.22233 1.20717 1.19307 1.01574 0.87654 1.30154 0.90899 1.43992 1.23308 1.04635 1.59487 1.20726 0.83719 0.99414 0.90724 1.21419 0.98106 0.92644 1.04505 1.20466 0.95629 0.99621 0.98343 1.21309 0.95569 1.00193 0.98148 1.21700 0.92436 0.85313 0.97989 0.89850 1.46157 1.52310 1.29088 1.09057 1.16770 0.79281 0.80895 0.86590 1.90900 1.60740 1.72453 1.14283 1.24736 1.10972 1.04447 0.97619 1.83165 1.44107 1.19719 1.02304 1.25184 1.06633 1.04690 1.00115 1.19767 1.03799 1.01073 0.92706 1.20358 0.99054 0.95863 0.87796 1.98411 1.96894 1.97767 1.05469 1.21475 0.93073 0.84628 0.98913 0.93867 0.90596 0.97612 0.87852 0.94839 0.94153 0.94345 0.93313 0.89886 0.77408 0.80592 0.82897 0.93210 0.95752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.92 8.44 55.49 0.47 -23.46 16 2 C 0.00 0.13 4.71 -17.43 -0.08 0.05 16 3 Si 0.88 21.31 29.66 -169.99 -5.04 16.27 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.26 -6.87 9.55 -15.06 -0.14 -7.01 16 8 H 0.07 1.93 7.85 -52.48 -0.41 1.52 16 9 N -0.59 -14.42 2.29 -172.09 -0.39 -14.81 16 10 C 0.18 4.32 4.96 -4.09 -0.02 4.29 16 11 C -0.13 -2.79 4.83 -28.58 -0.14 -2.93 16 12 C -0.10 -1.90 5.17 -29.71 -0.15 -2.05 16 13 C -0.11 -1.98 5.07 -27.94 -0.14 -2.12 16 14 C 0.13 2.33 2.28 -68.50 -0.16 2.18 16 15 H 0.08 1.65 6.73 -51.93 -0.35 1.30 16 16 N -0.71 -10.64 4.97 -55.75 -0.28 -10.92 16 17 C 0.58 9.23 7.74 -12.96 -0.10 9.13 16 18 O -0.51 -9.83 14.74 5.18 0.08 -9.76 16 19 C -0.26 -3.26 6.45 -36.80 -0.24 -3.49 16 20 S 0.24 2.03 22.15 -107.50 -2.38 -0.35 16 21 C -0.23 -1.64 10.92 29.17 0.32 -1.33 16 22 C -0.14 -1.26 10.06 -41.38 -0.42 -1.68 16 23 C 0.01 0.14 6.39 -40.34 -0.26 -0.12 16 24 Cl -0.01 -0.19 27.24 -51.86 -1.41 -1.61 16 25 C 0.15 3.10 5.83 -2.94 -0.02 3.08 16 26 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 27 H 0.08 2.03 6.00 -51.93 -0.31 1.72 16 28 H 0.01 0.13 8.07 -51.93 -0.42 -0.29 16 29 H 0.10 2.61 6.32 -51.93 -0.33 2.28 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.04 0.69 7.35 -51.93 -0.38 0.31 16 33 H 0.05 0.71 7.94 -51.93 -0.41 0.30 16 34 H 0.08 1.64 7.48 -51.93 -0.39 1.25 16 35 H 0.39 4.74 7.66 -40.82 -0.31 4.43 16 36 H 0.18 0.72 8.06 -52.49 -0.42 0.29 16 37 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.05 1.03 7.77 -51.93 -0.40 0.63 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 336.78 15.07 5.08 5.08 Total: -1.00 -29.67 336.78 -10.40 -40.07 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -4.97 Total: 1.49 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -1.55 Total: -2.00 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: -0.20 Total: -49.19 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.08 Total: -9.76 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.04 Total: 16.27 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.38 Total: -0.35 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.41 Total: -1.61 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.67 -10.40 -40.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034226221.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.987 kcal (2) G-P(sol) polarization free energy of solvation -29.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds