Wall clock time and date at job start Tue Mar 31 2020 15:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 120.00136 * 2 1 4 4 H 1.48497 * 109.46751 * 274.99176 * 3 2 1 5 5 H 1.48505 * 109.46923 * 34.99093 * 3 2 1 6 6 H 1.48498 * 109.47295 * 154.99025 * 3 2 1 7 7 C 1.38815 * 120.00124 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99666 * 212.40675 * 7 2 1 9 9 N 1.36936 * 120.00105 * 32.40719 * 7 2 1 10 10 C 1.44572 * 118.64177 * 2.60958 * 9 7 2 11 11 C 1.54865 * 109.60532 * 270.70532 * 10 9 7 12 12 C 1.47094 * 110.32138 * 288.73405 * 11 10 9 13 13 C 1.52726 * 114.22415 * 62.83053 * 12 11 10 14 14 C 1.50872 * 109.27787 * 274.83074 * 13 12 11 15 15 H 1.09001 * 109.36650 * 331.92197 * 14 13 12 16 16 N 1.46502 * 109.36840 * 212.18274 * 14 13 12 17 17 C 1.34775 * 119.99893 * 154.46899 * 16 14 13 18 18 O 1.21713 * 120.00293 * 0.27345 * 17 16 14 19 19 C 1.46441 * 119.99821 * 180.27808 * 17 16 14 20 20 S 1.75825 * 125.46170 * 359.68778 * 19 17 16 21 21 C 1.70608 * 91.58713 * 179.97438 * 20 19 17 22 22 C 1.33773 * 111.00110 * 0.32731 * 21 20 19 23 23 C 1.36791 * 125.46430 * 180.02562 * 19 17 16 24 24 Cl 1.73601 * 123.37794 * 359.97303 * 23 19 17 25 25 C 1.47608 * 118.64282 * 182.59249 * 9 7 2 26 26 H 0.96998 * 120.00397 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.45012 * 30.74704 * 10 9 7 28 28 H 1.09007 * 109.44670 * 150.66363 * 10 9 7 29 29 H 1.08994 * 109.32428 * 48.99733 * 11 10 9 30 30 H 1.09007 * 109.32614 * 168.64855 * 11 10 9 31 31 H 1.08996 * 108.51255 * 184.05572 * 12 11 10 32 32 H 1.08995 * 108.51245 * 301.70425 * 12 11 10 33 33 H 1.09006 * 109.44464 * 154.94092 * 13 12 11 34 34 H 1.09003 * 109.61423 * 34.82590 * 13 12 11 35 35 H 0.97002 * 120.00231 * 334.74124 * 16 14 13 36 36 H 1.08002 * 124.50091 * 180.02562 * 21 20 19 37 37 H 1.07997 * 122.45537 * 179.72377 * 22 21 20 38 38 H 1.08995 * 108.94904 * 17.20167 * 25 9 7 39 39 H 1.08995 * 108.94399 * 258.57691 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3921 2.1073 -1.3948 5 1 1.5043 2.6199 0.8029 6 1 3.5965 1.4120 0.5919 7 6 2.0102 -1.2022 0.0005 8 1 2.9641 -1.2747 0.5019 9 7 1.4855 -2.2960 -0.6345 10 6 0.2346 -2.1512 -1.3447 11 6 -0.9451 -2.4360 -0.3826 12 6 -1.0085 -3.8703 -0.0626 13 6 0.2185 -4.4028 0.6745 14 6 1.2821 -4.7713 -0.3300 15 1 0.8089 -5.0508 -1.2714 16 7 2.0588 -5.9047 0.1784 17 6 2.6870 -6.7310 -0.6813 18 8 2.6131 -6.5327 -1.8799 19 6 3.4583 -7.8674 -0.1733 20 16 3.6668 -8.2823 1.5225 21 6 4.6307 -9.6321 1.1227 22 6 4.7787 -9.7399 -0.2024 23 6 4.1375 -8.7726 -0.9418 24 17 4.1864 -8.7071 -2.6759 25 6 2.2207 -3.5742 -0.5661 26 1 -0.4850 0.8400 -0.0004 27 1 0.1515 -1.1350 -1.7300 28 1 0.2046 -2.8572 -2.1747 29 1 -0.8062 -1.8671 0.5367 30 1 -1.8786 -2.1331 -0.8569 31 1 -1.8885 -4.0485 0.5553 32 1 -1.1214 -4.4277 -0.9925 33 1 -0.0590 -5.2855 1.2507 34 1 0.6031 -3.6356 1.3466 35 1 2.1178 -6.0627 1.1337 36 1 5.0676 -10.3069 1.8439 37 1 5.3592 -10.5281 -0.6585 38 1 2.9425 -3.5241 0.2491 39 1 2.7573 -3.7243 -1.5029 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034226221.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:48 Heat of formation + Delta-G solvation = 10.809397 kcal Electronic energy + Delta-G solvation = -23734.456494 eV Core-core repulsion = 20216.151859 eV Total energy + Delta-G solvation = -3518.304635 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.11596 -39.53709 -38.66175 -37.06801 -36.24684 -34.73891 -33.14043 -31.85472 -30.33148 -27.98801 -26.32877 -25.77712 -24.60699 -22.63093 -21.57162 -20.96889 -20.37233 -19.56643 -18.52203 -17.59569 -17.11433 -16.91387 -16.41805 -16.22316 -15.64500 -15.46416 -15.31509 -14.76867 -14.50995 -14.43601 -14.23013 -13.89077 -13.77881 -13.72672 -13.30607 -12.92172 -12.71591 -12.51091 -12.44328 -12.27469 -12.16341 -11.88149 -11.82224 -11.80330 -11.49880 -11.19557 -11.09950 -10.98246 -10.28163 -10.18337 -9.88404 -9.49580 -8.84160 -7.81008 -5.05479 -0.68696 0.13870 0.73242 1.20220 1.43418 1.47346 1.53767 1.58869 1.99383 2.08126 2.56537 3.23380 3.57593 3.78331 3.92240 4.00746 4.04691 4.17123 4.27651 4.47625 4.52781 4.67829 4.68649 4.85538 4.89157 4.95183 5.01150 5.06830 5.10460 5.26816 5.41094 5.47530 5.51094 5.54676 5.68752 5.83937 6.30910 6.34020 6.44950 7.12211 7.25184 7.96035 8.31639 9.17547 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.018765 B = 0.003183 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.791430 B = 8794.696022 C = 8869.714351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C -0.034 4.034 3 Si 0.938 3.062 4 H -0.297 1.297 5 H -0.296 1.296 6 H -0.276 1.276 7 C -0.272 4.272 8 H 0.069 0.931 9 N -0.602 5.602 10 C 0.184 3.816 11 C -0.111 4.111 12 C -0.103 4.103 13 C -0.103 4.103 14 C 0.148 3.852 15 H 0.067 0.933 16 N -0.706 5.706 17 C 0.579 3.421 18 O -0.553 6.553 19 C -0.305 4.305 20 S 0.299 5.701 21 C -0.201 4.201 22 C -0.158 4.158 23 C 0.007 3.993 24 Cl -0.040 7.040 25 C 0.150 3.850 26 H 0.247 0.753 27 H 0.043 0.957 28 H 0.010 0.990 29 H 0.072 0.928 30 H 0.032 0.968 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.408 0.592 36 H 0.218 0.782 37 H 0.174 0.826 38 H 0.051 0.949 39 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.350 -22.670 6.583 24.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.231 4.231 3 Si 0.768 3.232 4 H -0.225 1.225 5 H -0.223 1.223 6 H -0.201 1.201 7 C -0.401 4.401 8 H 0.087 0.913 9 N -0.325 5.325 10 C 0.058 3.942 11 C -0.151 4.151 12 C -0.141 4.141 13 C -0.141 4.141 14 C 0.042 3.958 15 H 0.085 0.915 16 N -0.358 5.358 17 C 0.366 3.634 18 O -0.432 6.432 19 C -0.426 4.426 20 S 0.565 5.435 21 C -0.339 4.339 22 C -0.188 4.188 23 C -0.037 4.037 24 Cl -0.011 7.011 25 C 0.024 3.976 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.028 0.972 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.245 0.755 36 H 0.235 0.765 37 H 0.192 0.808 38 H 0.070 0.930 39 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 5.692 -21.785 6.955 23.566 hybrid contribution 0.921 0.631 -1.525 1.890 sum 6.613 -21.154 5.430 22.819 Atomic orbital electron populations 1.70476 1.05683 1.25006 1.53068 1.25157 0.95779 0.99830 1.02340 0.85690 0.78968 0.81738 0.76831 1.22501 1.22318 1.20084 1.19472 1.01543 0.88798 1.30272 0.91264 1.44049 1.23539 1.05584 1.59354 1.20595 0.84730 0.97552 0.91372 1.21153 0.96961 0.94755 1.02253 1.20402 0.97220 0.97070 0.99365 1.21195 0.94555 1.00918 0.97474 1.21200 0.91947 0.84827 0.97830 0.91528 1.45904 1.51935 1.28032 1.09908 1.17211 0.78754 0.81398 0.86047 1.90870 1.62330 1.73804 1.16219 1.24530 1.12813 1.04433 1.00809 1.82969 1.43056 1.19267 0.98198 1.25737 1.04194 1.03849 1.00118 1.19927 1.04467 1.01190 0.93208 1.20749 0.99437 0.96724 0.86752 1.98398 1.96983 1.97871 1.07830 1.21450 0.93483 0.84882 0.97827 0.94330 0.93906 0.97174 0.90910 0.94886 0.91808 0.93650 0.89533 0.92148 0.75511 0.76517 0.80849 0.93046 0.97924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.64 8.44 21.65 0.18 -49.46 16 2 C -0.03 -1.87 4.71 84.86 0.40 -1.47 16 3 Si 0.94 44.54 29.66 68.60 2.03 46.57 16 4 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.27 -14.72 9.55 84.03 0.80 -13.92 16 8 H 0.07 3.72 7.85 -2.91 -0.02 3.70 16 9 N -0.60 -30.07 2.29 -698.37 -1.60 -31.67 16 10 C 0.18 9.04 4.96 87.38 0.43 9.47 16 11 C -0.11 -4.93 4.83 29.39 0.14 -4.79 16 12 C -0.10 -3.66 5.17 28.67 0.15 -3.51 16 13 C -0.10 -3.43 5.07 29.81 0.15 -3.27 16 14 C 0.15 5.24 2.28 44.62 0.10 5.35 16 15 H 0.07 2.64 6.73 -2.39 -0.02 2.62 16 16 N -0.71 -20.25 4.97 -448.51 -2.23 -22.48 16 17 C 0.58 18.27 7.74 86.38 0.67 18.94 16 18 O -0.55 -22.04 14.74 -4.39 -0.06 -22.10 16 19 C -0.30 -7.31 6.45 24.07 0.16 -7.16 16 20 S 0.30 3.93 22.15 -56.49 -1.25 2.68 16 21 C -0.20 -1.95 10.92 66.80 0.73 -1.22 16 22 C -0.16 -2.32 10.06 21.10 0.21 -2.11 16 23 C 0.01 0.17 6.39 21.78 0.14 0.31 16 24 Cl -0.04 -1.08 27.24 -2.72 -0.07 -1.16 16 25 C 0.15 6.49 5.83 86.49 0.50 6.99 16 26 H 0.25 13.42 8.31 -92.71 -0.77 12.65 16 27 H 0.04 2.37 6.00 -2.39 -0.01 2.36 16 28 H 0.01 0.48 8.07 -2.38 -0.02 0.46 16 29 H 0.07 3.72 6.32 -2.39 -0.02 3.71 16 30 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.04 1.57 7.35 -2.39 -0.02 1.55 16 33 H 0.09 2.23 7.94 -2.38 -0.02 2.21 16 34 H 0.06 2.33 7.48 -2.39 -0.02 2.31 16 35 H 0.41 8.96 7.66 -92.71 -0.71 8.25 16 36 H 0.22 0.35 8.06 -2.91 -0.02 0.32 16 37 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 38 H 0.05 2.16 7.77 -2.39 -0.02 2.14 16 39 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 Total: -1.00 -67.48 336.78 1.96 -65.52 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 0.37 Total: 8.51 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 4.59 Total: 3.59 kcal Atomic # 7 Polarization: -99.96 SS G_CDS: -3.64 Total: -103.61 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.06 Total: -22.10 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -1.25 Total: 2.68 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.07 Total: -1.16 kcal Total: -67.48 1.96 -65.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034226221.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.329 kcal (2) G-P(sol) polarization free energy of solvation -67.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds