Wall clock time and date at job start Tue Mar 31 2020 15:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99749 * 2 1 4 4 H 1.48498 * 109.47188 * 86.02009 * 3 2 1 5 5 H 1.48503 * 109.47057 * 326.01950 * 3 2 1 6 6 H 1.48494 * 109.47116 * 206.02318 * 3 2 1 7 7 C 1.38807 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99848 * 160.30419 * 7 2 1 9 9 N 1.36933 * 120.00199 * 340.30112 * 7 2 1 10 10 C 1.50170 * 120.53876 * 336.68084 * 9 7 2 11 11 C 1.46243 * 107.53210 * 109.56279 * 10 9 7 12 12 C 1.52529 * 114.27473 * 58.41347 * 11 10 9 13 13 C 1.50124 * 105.41472 * 270.59034 * 12 11 10 14 14 C 1.54842 * 110.81724 * 97.68105 * 13 12 11 15 15 H 1.09001 * 109.35779 * 81.33949 * 14 13 12 16 16 N 1.46499 * 109.36171 * 200.92752 * 14 13 12 17 17 C 1.34778 * 120.00326 * 205.00148 * 16 14 13 18 18 O 1.21726 * 119.99589 * 0.02562 * 17 16 14 19 19 C 1.46439 * 120.00305 * 180.02562 * 17 16 14 20 20 S 1.75825 * 125.46088 * 0.02914 * 19 17 16 21 21 C 1.70599 * 91.58700 * 179.97438 * 20 19 17 22 22 C 1.33775 * 110.99903 * 359.97438 * 21 20 19 23 23 C 1.36790 * 125.46325 * 179.71461 * 19 17 16 24 24 Cl 1.73606 * 123.37793 * 0.02562 * 23 19 17 25 25 C 1.43436 * 120.53637 * 156.40255 * 9 7 2 26 26 H 0.96996 * 120.00447 * 359.97438 * 1 2 3 27 27 H 1.08990 * 109.84965 * 229.07408 * 10 9 7 28 28 H 1.08997 * 109.84542 * 349.99380 * 10 9 7 29 29 H 1.08995 * 108.51937 * 179.65089 * 11 10 9 30 30 H 1.08997 * 108.52311 * 297.32634 * 11 10 9 31 31 H 1.08998 * 110.25104 * 29.56458 * 12 11 10 32 32 H 1.09001 * 110.24854 * 151.47620 * 12 11 10 33 33 H 1.09000 * 109.21455 * 218.02927 * 13 12 11 34 34 H 1.09003 * 109.20687 * 337.34492 * 13 12 11 35 35 H 0.96996 * 119.99921 * 25.00598 * 16 14 13 36 36 H 1.08003 * 124.50238 * 180.02562 * 21 20 19 37 37 H 1.07998 * 122.45187 * 179.97438 * 22 21 20 38 38 H 1.08991 * 108.16323 * 33.30724 * 25 9 7 39 39 H 1.09001 * 108.15805 * 149.87591 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4135 2.0950 1.3967 5 1 1.4922 2.6269 -0.7825 6 1 3.5872 1.4174 -0.6142 7 6 2.0103 -1.2021 0.0005 8 1 3.0429 -1.2296 -0.3147 9 7 1.3858 -2.3531 0.4008 10 6 0.1887 -2.2967 1.3057 11 6 -0.9796 -2.6824 0.5152 12 6 -0.8834 -4.0704 -0.1099 13 6 -0.2355 -3.8613 -1.4479 14 6 1.2832 -4.1542 -1.3757 15 1 1.4476 -5.2295 -1.4458 16 7 1.9599 -3.4886 -2.4916 17 6 3.1349 -3.9653 -2.9482 18 8 3.6338 -4.9492 -2.4336 19 6 3.8116 -3.2996 -4.0633 20 16 3.2235 -1.8746 -4.9090 21 6 4.5817 -1.8685 -5.9413 22 6 5.4091 -2.8789 -5.6510 23 6 5.0054 -3.6830 -4.6101 24 17 5.9175 -5.0497 -4.0496 25 6 1.8609 -3.6319 -0.0423 26 1 -0.4850 0.8400 0.0004 27 1 0.3194 -2.9907 2.1359 28 1 0.0606 -1.2837 1.6871 29 1 -1.8584 -2.6529 1.1593 30 1 -1.1129 -1.9535 -0.2841 31 1 -0.2672 -4.7215 0.5101 32 1 -1.8782 -4.4986 -0.2328 33 1 -0.6951 -4.5284 -2.1772 34 1 -0.3869 -2.8286 -1.7622 35 1 1.5622 -2.7047 -2.9018 36 1 4.7516 -1.1446 -6.7246 37 1 6.3281 -3.0491 -6.1921 38 1 2.9443 -3.5745 -0.1465 39 1 1.6380 -4.3645 0.7334 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034226224.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:52 Heat of formation + Delta-G solvation = 21.434236 kcal Electronic energy + Delta-G solvation = -24344.008563 eV Core-core repulsion = 20826.164655 eV Total energy + Delta-G solvation = -3517.843908 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.54805 -38.16195 -37.28510 -35.94701 -34.19749 -33.12050 -31.10713 -30.49178 -29.18714 -26.19321 -25.12010 -23.90996 -22.99654 -21.25478 -19.87721 -19.48830 -18.99906 -18.26544 -16.64396 -16.28978 -15.58110 -15.14293 -15.09412 -14.68786 -14.26562 -13.83614 -13.57346 -13.53773 -13.29524 -12.98865 -12.79146 -12.36253 -12.19425 -11.79921 -11.56268 -11.41268 -11.29988 -11.22494 -10.80617 -10.79132 -10.66409 -10.47287 -10.10977 -9.98184 -9.73347 -9.50517 -9.38748 -9.25624 -8.94931 -8.61741 -8.50543 -8.32136 -6.70992 -5.82252 -3.20357 0.41690 1.20938 1.69670 2.20820 2.55492 3.34222 3.42765 3.44719 3.47650 3.63959 4.47758 4.81270 5.02446 5.16730 5.30551 5.37738 5.47958 5.58687 5.64816 5.85240 5.91039 5.95605 6.12586 6.22099 6.26122 6.44525 6.51399 6.61916 6.84160 6.91539 6.97304 7.02789 7.19068 7.26321 7.60524 7.73279 7.97709 7.99148 8.40349 8.62966 9.17216 9.84419 10.37838 11.24208 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.012591 B = 0.005040 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.354776 B = 5554.204382 C = 6739.024305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.003 3.997 3 Si 0.893 3.107 4 H -0.289 1.289 5 H -0.293 1.293 6 H -0.280 1.280 7 C -0.239 4.239 8 H 0.064 0.936 9 N -0.582 5.582 10 C 0.165 3.835 11 C -0.130 4.130 12 C -0.112 4.112 13 C -0.110 4.110 14 C 0.119 3.881 15 H 0.075 0.925 16 N -0.695 5.695 17 C 0.580 3.420 18 O -0.525 6.525 19 C -0.250 4.250 20 S 0.257 5.743 21 C -0.237 4.237 22 C -0.143 4.143 23 C 0.006 3.994 24 Cl -0.021 7.021 25 C 0.150 3.850 26 H 0.252 0.748 27 H 0.005 0.995 28 H 0.089 0.911 29 H 0.025 0.975 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.039 0.961 34 H 0.080 0.920 35 H 0.397 0.603 36 H 0.175 0.825 37 H 0.150 0.850 38 H 0.038 0.962 39 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.414 -4.815 -10.718 12.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.724 3.276 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.369 4.369 8 H 0.082 0.918 9 N -0.303 5.303 10 C 0.041 3.959 11 C -0.169 4.169 12 C -0.150 4.150 13 C -0.149 4.149 14 C 0.012 3.988 15 H 0.093 0.907 16 N -0.344 5.344 17 C 0.365 3.635 18 O -0.404 6.404 19 C -0.372 4.372 20 S 0.524 5.476 21 C -0.375 4.375 22 C -0.175 4.175 23 C -0.036 4.036 24 Cl 0.008 6.992 25 C 0.019 3.981 26 H 0.062 0.938 27 H 0.023 0.977 28 H 0.107 0.893 29 H 0.043 0.957 30 H 0.119 0.881 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.098 0.902 35 H 0.231 0.769 36 H 0.192 0.808 37 H 0.168 0.832 38 H 0.057 0.943 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.449 -4.545 -10.127 11.367 hybrid contribution 1.668 0.471 -0.572 1.825 sum 4.117 -4.075 -10.699 12.167 Atomic orbital electron populations 1.69968 1.04930 1.25103 1.54453 1.24847 0.95186 0.97940 1.01547 0.86408 0.79320 0.84227 0.77677 1.21660 1.21927 1.20561 1.19178 0.93480 0.85261 1.38950 0.91808 1.44259 1.33763 1.00787 1.51488 1.20171 0.85362 1.00416 0.89921 1.21009 0.98079 0.95535 1.02277 1.20971 0.98621 0.98927 0.96481 1.21679 0.93323 1.02347 0.97504 1.22778 0.91903 0.95876 0.88259 0.90707 1.45895 1.21468 1.31688 1.35327 1.16695 0.81319 0.83881 0.81621 1.90839 1.64951 1.25956 1.58643 1.24783 1.01596 1.04409 1.06460 1.83457 1.19611 1.21638 1.22897 1.25202 1.01166 1.04305 1.06821 1.19699 1.02811 0.95985 0.99006 1.20274 0.92949 0.93467 0.96900 1.98385 1.71984 1.40491 1.88372 1.20714 0.97080 0.88507 0.91762 0.93810 0.97672 0.89316 0.95666 0.88123 0.92388 0.93210 0.94182 0.90187 0.76861 0.80791 0.83191 0.94327 0.94389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.22 9.43 55.49 0.52 -22.70 16 2 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 3 Si 0.89 20.72 29.60 -169.99 -5.03 15.69 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.24 -6.09 9.62 -15.06 -0.14 -6.23 16 8 H 0.06 1.70 7.89 -52.49 -0.41 1.28 16 9 N -0.58 -13.55 2.61 -175.41 -0.46 -14.01 16 10 C 0.16 3.67 5.25 -5.20 -0.03 3.65 16 11 C -0.13 -2.63 5.02 -30.18 -0.15 -2.78 16 12 C -0.11 -1.94 5.76 -28.40 -0.16 -2.11 16 13 C -0.11 -1.94 5.23 -27.19 -0.14 -2.08 16 14 C 0.12 2.22 2.91 -66.22 -0.19 2.02 16 15 H 0.07 1.39 7.57 -51.93 -0.39 1.00 16 16 N -0.69 -12.61 5.08 -53.53 -0.27 -12.88 16 17 C 0.58 10.78 7.59 -12.96 -0.10 10.68 16 18 O -0.53 -10.98 14.75 5.17 0.08 -10.90 16 19 C -0.25 -3.99 6.45 -36.81 -0.24 -4.23 16 20 S 0.26 3.23 22.15 -107.50 -2.38 0.85 16 21 C -0.24 -2.47 10.92 29.17 0.32 -2.15 16 22 C -0.14 -1.67 10.06 -41.38 -0.42 -2.08 16 23 C 0.01 0.10 6.40 -40.34 -0.26 -0.16 16 24 Cl -0.02 -0.32 27.24 -51.86 -1.41 -1.74 16 25 C 0.15 3.15 4.75 -4.92 -0.02 3.13 16 26 H 0.25 6.45 8.31 -40.82 -0.34 6.11 16 27 H 0.01 0.11 8.13 -51.93 -0.42 -0.31 16 28 H 0.09 2.22 6.06 -51.93 -0.31 1.91 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.10 2.31 5.28 -51.93 -0.27 2.04 16 31 H 0.06 1.00 6.28 -51.93 -0.33 0.67 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.59 6.58 -51.93 -0.34 1.25 16 35 H 0.40 6.97 7.55 -40.82 -0.31 6.66 16 36 H 0.17 1.25 8.06 -52.48 -0.42 0.83 16 37 H 0.15 1.38 8.06 -52.49 -0.42 0.95 16 38 H 0.04 0.89 7.80 -51.93 -0.41 0.49 16 39 H 0.04 0.76 6.89 -51.93 -0.36 0.40 16 LS Contribution 335.93 15.07 5.06 5.06 Total: -1.00 -27.78 335.93 -10.32 -38.10 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -4.81 Total: 4.88 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -1.62 Total: -2.36 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: -0.21 Total: -49.59 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.08 Total: -10.90 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -2.38 Total: 0.85 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.41 Total: -1.74 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.78 -10.32 -38.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034226224.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.539 kcal (2) G-P(sol) polarization free energy of solvation -27.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds