Wall clock time and date at job start Tue Mar 31 2020 15:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99749 * 2 1 4 4 H 1.48498 * 109.47188 * 86.02009 * 3 2 1 5 5 H 1.48503 * 109.47057 * 326.01950 * 3 2 1 6 6 H 1.48494 * 109.47116 * 206.02318 * 3 2 1 7 7 C 1.38807 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99848 * 160.30419 * 7 2 1 9 9 N 1.36933 * 120.00199 * 340.30112 * 7 2 1 10 10 C 1.50170 * 120.53876 * 336.68084 * 9 7 2 11 11 C 1.46243 * 107.53210 * 109.56279 * 10 9 7 12 12 C 1.52529 * 114.27473 * 58.41347 * 11 10 9 13 13 C 1.50124 * 105.41472 * 270.59034 * 12 11 10 14 14 C 1.54842 * 110.81724 * 97.68105 * 13 12 11 15 15 H 1.09001 * 109.35779 * 81.33949 * 14 13 12 16 16 N 1.46499 * 109.36171 * 200.92752 * 14 13 12 17 17 C 1.34778 * 120.00326 * 205.00148 * 16 14 13 18 18 O 1.21726 * 119.99589 * 0.02562 * 17 16 14 19 19 C 1.46439 * 120.00305 * 180.02562 * 17 16 14 20 20 S 1.75825 * 125.46088 * 0.02914 * 19 17 16 21 21 C 1.70599 * 91.58700 * 179.97438 * 20 19 17 22 22 C 1.33775 * 110.99903 * 359.97438 * 21 20 19 23 23 C 1.36790 * 125.46325 * 179.71461 * 19 17 16 24 24 Cl 1.73606 * 123.37793 * 0.02562 * 23 19 17 25 25 C 1.43436 * 120.53637 * 156.40255 * 9 7 2 26 26 H 0.96996 * 120.00447 * 359.97438 * 1 2 3 27 27 H 1.08990 * 109.84965 * 229.07408 * 10 9 7 28 28 H 1.08997 * 109.84542 * 349.99380 * 10 9 7 29 29 H 1.08995 * 108.51937 * 179.65089 * 11 10 9 30 30 H 1.08997 * 108.52311 * 297.32634 * 11 10 9 31 31 H 1.08998 * 110.25104 * 29.56458 * 12 11 10 32 32 H 1.09001 * 110.24854 * 151.47620 * 12 11 10 33 33 H 1.09000 * 109.21455 * 218.02927 * 13 12 11 34 34 H 1.09003 * 109.20687 * 337.34492 * 13 12 11 35 35 H 0.96996 * 119.99921 * 25.00598 * 16 14 13 36 36 H 1.08003 * 124.50238 * 180.02562 * 21 20 19 37 37 H 1.07998 * 122.45187 * 179.97438 * 22 21 20 38 38 H 1.08991 * 108.16323 * 33.30724 * 25 9 7 39 39 H 1.09001 * 108.15805 * 149.87591 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4135 2.0950 1.3967 5 1 1.4922 2.6269 -0.7825 6 1 3.5872 1.4174 -0.6142 7 6 2.0103 -1.2021 0.0005 8 1 3.0429 -1.2296 -0.3147 9 7 1.3858 -2.3531 0.4008 10 6 0.1887 -2.2967 1.3057 11 6 -0.9796 -2.6824 0.5152 12 6 -0.8834 -4.0704 -0.1099 13 6 -0.2355 -3.8613 -1.4479 14 6 1.2832 -4.1542 -1.3757 15 1 1.4476 -5.2295 -1.4458 16 7 1.9599 -3.4886 -2.4916 17 6 3.1349 -3.9653 -2.9482 18 8 3.6338 -4.9492 -2.4336 19 6 3.8116 -3.2996 -4.0633 20 16 3.2235 -1.8746 -4.9090 21 6 4.5817 -1.8685 -5.9413 22 6 5.4091 -2.8789 -5.6510 23 6 5.0054 -3.6830 -4.6101 24 17 5.9175 -5.0497 -4.0496 25 6 1.8609 -3.6319 -0.0423 26 1 -0.4850 0.8400 0.0004 27 1 0.3194 -2.9907 2.1359 28 1 0.0606 -1.2837 1.6871 29 1 -1.8584 -2.6529 1.1593 30 1 -1.1129 -1.9535 -0.2841 31 1 -0.2672 -4.7215 0.5101 32 1 -1.8782 -4.4986 -0.2328 33 1 -0.6951 -4.5284 -2.1772 34 1 -0.3869 -2.8286 -1.7622 35 1 1.5622 -2.7047 -2.9018 36 1 4.7516 -1.1446 -6.7246 37 1 6.3281 -3.0491 -6.1921 38 1 2.9443 -3.5745 -0.1465 39 1 1.6380 -4.3645 0.7334 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034226224.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:51 Heat of formation + Delta-G solvation = 6.267718 kcal Electronic energy + Delta-G solvation = -24344.666232 eV Core-core repulsion = 20826.164655 eV Total energy + Delta-G solvation = -3518.501577 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.97102 -39.52173 -38.62445 -37.05852 -35.82721 -34.76708 -32.89572 -31.99268 -30.44254 -27.95397 -26.39040 -25.32590 -24.70384 -22.61737 -21.41066 -20.91267 -20.28403 -19.52473 -18.53010 -17.47130 -17.01083 -16.79451 -16.42352 -16.24585 -15.69091 -15.54699 -15.11020 -14.73612 -14.48432 -14.33201 -14.02393 -13.89768 -13.68743 -13.41899 -13.23510 -13.16767 -12.65917 -12.50584 -12.34355 -12.29012 -12.21880 -11.88614 -11.79795 -11.78613 -11.29153 -11.12351 -10.92228 -10.88314 -10.44445 -10.12308 -9.82141 -9.52571 -8.57675 -7.77855 -5.17597 -0.65532 0.14799 0.75315 1.21524 1.44445 1.46506 1.52318 1.57588 2.10275 2.28906 2.56071 3.34466 3.62712 3.75637 3.96291 4.03145 4.16231 4.19162 4.43662 4.54974 4.61631 4.67529 4.71507 4.85661 4.91254 4.94956 5.01883 5.07554 5.23473 5.33362 5.35815 5.46856 5.62472 5.69195 5.73551 5.82634 6.25470 6.45037 6.57769 7.20988 7.23336 7.94486 8.45279 9.25414 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.012591 B = 0.005040 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.354776 B = 5554.204382 C = 6739.024305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.030 4.030 3 Si 0.942 3.058 4 H -0.296 1.296 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.245 4.245 8 H 0.046 0.954 9 N -0.592 5.592 10 C 0.167 3.833 11 C -0.122 4.122 12 C -0.104 4.104 13 C -0.100 4.100 14 C 0.126 3.874 15 H 0.078 0.922 16 N -0.695 5.695 17 C 0.578 3.422 18 O -0.558 6.558 19 C -0.297 4.297 20 S 0.270 5.730 21 C -0.205 4.205 22 C -0.154 4.154 23 C 0.006 3.994 24 Cl -0.034 7.034 25 C 0.154 3.846 26 H 0.248 0.752 27 H 0.017 0.983 28 H 0.058 0.942 29 H 0.036 0.964 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.399 0.601 36 H 0.217 0.783 37 H 0.179 0.821 38 H 0.010 0.990 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.342 -4.536 -12.458 13.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.226 4.226 3 Si 0.772 3.228 4 H -0.224 1.224 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.375 4.375 8 H 0.064 0.936 9 N -0.313 5.313 10 C 0.044 3.956 11 C -0.161 4.161 12 C -0.142 4.142 13 C -0.138 4.138 14 C 0.019 3.981 15 H 0.096 0.904 16 N -0.344 5.344 17 C 0.364 3.636 18 O -0.440 6.440 19 C -0.419 4.419 20 S 0.536 5.464 21 C -0.343 4.343 22 C -0.184 4.184 23 C -0.038 4.038 24 Cl -0.005 7.005 25 C 0.025 3.975 26 H 0.058 0.942 27 H 0.035 0.965 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.234 0.766 36 H 0.234 0.766 37 H 0.196 0.804 38 H 0.028 0.972 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.369 -4.269 -11.879 12.843 hybrid contribution 1.746 0.414 -0.058 1.795 sum 4.115 -3.854 -11.937 13.201 Atomic orbital electron populations 1.70088 1.05403 1.25078 1.54746 1.25287 0.95837 0.99688 1.01813 0.85648 0.78439 0.81683 0.76996 1.22384 1.21709 1.20487 1.19097 0.92826 0.86446 1.39156 0.93636 1.44297 1.34146 1.00863 1.52020 1.20109 0.85990 0.99024 0.90439 1.20830 0.97354 0.96640 1.01278 1.20940 1.00276 0.97150 0.95829 1.21569 0.92394 1.01414 0.98432 1.22584 0.92681 0.95838 0.87043 0.90369 1.45869 1.21626 1.31752 1.35155 1.17079 0.81022 0.83522 0.81959 1.90800 1.65674 1.27458 1.60024 1.24625 1.02872 1.06904 1.07488 1.83426 1.20505 1.19705 1.22729 1.25710 0.98939 1.03748 1.05927 1.19940 1.04216 0.95757 0.98476 1.20689 0.92482 0.93214 0.97370 1.98377 1.72133 1.41357 1.88658 1.20667 0.95395 0.87929 0.93529 0.94247 0.96474 0.92331 0.94563 0.90825 0.92007 0.90386 0.91622 0.92579 0.76613 0.76634 0.80410 0.97204 0.93446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.33 9.43 21.65 0.20 -47.13 16 2 C -0.03 -1.52 4.91 84.86 0.42 -1.10 16 3 Si 0.94 42.84 29.60 68.60 2.03 44.87 16 4 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.24 -12.73 9.62 84.03 0.81 -11.92 16 8 H 0.05 2.50 7.89 -2.91 -0.02 2.48 16 9 N -0.59 -27.93 2.61 -708.86 -1.85 -29.78 16 10 C 0.17 7.49 5.25 83.58 0.44 7.93 16 11 C -0.12 -4.84 5.02 28.36 0.14 -4.70 16 12 C -0.10 -3.40 5.76 29.51 0.17 -3.23 16 13 C -0.10 -3.38 5.23 30.30 0.16 -3.22 16 14 C 0.13 4.67 2.91 46.10 0.13 4.80 16 15 H 0.08 2.87 7.57 -2.39 -0.02 2.85 16 16 N -0.70 -25.53 5.08 -441.46 -2.24 -27.78 16 17 C 0.58 21.85 7.59 86.38 0.66 22.50 16 18 O -0.56 -23.98 14.75 -4.43 -0.07 -24.04 16 19 C -0.30 -9.39 6.45 24.07 0.16 -9.24 16 20 S 0.27 6.32 22.15 -56.49 -1.25 5.07 16 21 C -0.21 -3.53 10.92 66.81 0.73 -2.80 16 22 C -0.15 -3.15 10.06 21.10 0.21 -2.94 16 23 C 0.01 0.18 6.40 21.78 0.14 0.32 16 24 Cl -0.03 -1.04 27.24 -2.72 -0.07 -1.11 16 25 C 0.15 6.58 4.75 87.42 0.41 7.00 16 26 H 0.25 12.78 8.31 -92.71 -0.77 12.01 16 27 H 0.02 0.72 8.13 -2.39 -0.02 0.70 16 28 H 0.06 2.98 6.06 -2.39 -0.01 2.96 16 29 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 3.37 5.28 -2.39 -0.01 3.36 16 31 H 0.06 1.99 6.28 -2.39 -0.02 1.98 16 32 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16 34 H 0.06 2.21 6.58 -2.39 -0.02 2.19 16 35 H 0.40 14.18 7.55 -92.71 -0.70 13.48 16 36 H 0.22 1.89 8.06 -2.91 -0.02 1.87 16 37 H 0.18 2.61 8.06 -2.91 -0.02 2.59 16 38 H 0.01 0.46 7.80 -2.39 -0.02 0.45 16 39 H 0.05 1.90 6.89 -2.39 -0.02 1.88 16 Total: -1.00 -61.36 335.93 1.72 -59.65 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.39 Total: 16.84 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 4.58 Total: 3.41 kcal Atomic # 7 Polarization: -100.80 SS G_CDS: -3.89 Total: -104.69 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.07 Total: -24.04 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: 6.32 SS G_CDS: -1.25 Total: 5.07 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.07 Total: -1.11 kcal Total: -61.36 1.72 -59.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034226224.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.914 kcal (2) G-P(sol) polarization free energy of solvation -61.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds