Wall clock time and date at job start Tue Mar 31 2020 15:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 119.99663 * 2 1 4 4 H 1.48504 * 109.47178 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47407 * 300.00092 * 3 2 1 6 6 H 1.48500 * 109.47262 * 60.00578 * 3 2 1 7 7 C 1.38812 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00045 * 160.41455 * 7 2 1 9 9 N 1.36932 * 119.99993 * 340.41168 * 7 2 1 10 10 C 1.50172 * 120.53765 * 336.71380 * 9 7 2 11 11 C 1.46242 * 107.53226 * 109.61285 * 10 9 7 12 12 C 1.52529 * 114.27966 * 58.40656 * 11 10 9 13 13 C 1.50118 * 105.41457 * 270.59263 * 12 11 10 14 14 C 1.54846 * 110.81657 * 97.68267 * 13 12 11 15 15 H 1.09003 * 109.35984 * 81.19995 * 14 13 12 16 16 N 1.46500 * 109.35969 * 200.92435 * 14 13 12 17 17 C 1.34773 * 119.99931 * 205.27294 * 16 14 13 18 18 O 1.21638 * 120.00236 * 0.02562 * 17 16 14 19 19 C 1.47165 * 120.00012 * 180.02562 * 17 16 14 20 20 C 1.36053 * 123.46222 * 359.70251 * 19 17 16 21 21 S 1.70445 * 110.82768 * 180.26968 * 20 19 17 22 22 C 1.75508 * 92.45836 * 0.02562 * 21 20 19 23 23 C 1.32842 * 110.57881 * 359.97438 * 22 21 20 24 24 Cl 1.73602 * 123.46750 * 179.97438 * 23 22 21 25 25 C 1.43133 * 120.56404 * 156.66156 * 9 7 2 26 26 H 0.96997 * 120.00526 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.84890 * 350.10254 * 10 9 7 28 28 H 1.09003 * 109.84465 * 229.11548 * 10 9 7 29 29 H 1.09000 * 108.51794 * 297.16842 * 11 10 9 30 30 H 1.08996 * 108.40090 * 179.55826 * 11 10 9 31 31 H 1.09000 * 110.24607 * 151.61400 * 12 11 10 32 32 H 1.08996 * 110.24730 * 29.56545 * 12 11 10 33 33 H 1.09000 * 109.21003 * 337.33934 * 13 12 11 34 34 H 1.09000 * 109.17085 * 218.00275 * 13 12 11 35 35 H 0.96999 * 119.99769 * 25.27653 * 16 14 13 36 36 H 1.07993 * 124.58477 * 0.23402 * 20 19 17 37 37 H 1.07997 * 124.71013 * 179.97438 * 22 21 20 38 38 H 1.09000 * 108.13173 * 149.80184 * 25 9 7 39 39 H 1.09001 * 107.99227 * 33.34008 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0434 -1.2291 -0.3141 9 7 1.3850 -2.3539 0.3965 10 6 0.1860 -2.2990 1.2990 11 6 -0.9805 -2.6847 0.5057 12 6 -0.8821 -4.0720 -0.1207 13 6 -0.2315 -3.8612 -1.4570 14 6 1.2873 -4.1533 -1.3819 15 1 1.4522 -5.2286 -1.4503 16 7 1.9658 -3.4862 -2.4958 17 6 3.1393 -3.9650 -2.9540 18 8 3.6349 -4.9513 -2.4429 19 6 3.8213 -3.2945 -4.0725 20 6 3.3284 -2.1920 -4.6991 21 16 4.3715 -1.6885 -5.9496 22 6 5.5049 -2.9900 -5.6307 23 6 5.0795 -3.7432 -4.6226 24 17 5.9457 -5.1252 -4.0281 25 6 1.8626 -3.6298 -0.0424 26 1 -0.4851 0.8400 0.0004 27 1 0.0557 -1.2863 1.6802 28 1 0.3153 -2.9939 2.1288 29 1 -1.1141 -1.9536 -0.2916 30 1 -1.8591 -2.6573 1.1501 31 1 -1.8765 -4.4996 -0.2483 32 1 -0.2667 -4.7233 0.5000 33 1 -0.3830 -2.8284 -1.7707 34 1 -0.6894 -4.5285 -2.1873 35 1 1.5704 -2.6998 -2.9035 36 1 2.4014 -1.7025 -4.4396 37 1 6.4211 -3.1555 -6.1781 38 1 1.6371 -4.3616 0.7333 39 1 2.9466 -3.5685 -0.1391 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034257846.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:22 Heat of formation + Delta-G solvation = 19.687434 kcal Electronic energy + Delta-G solvation = -24358.271162 eV Core-core repulsion = 20840.351507 eV Total energy + Delta-G solvation = -3517.919655 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 3.09 seconds Orbital eigenvalues (eV) -39.64131 -37.98924 -36.95977 -35.77257 -34.18233 -33.12330 -31.10794 -30.48947 -29.13331 -26.16637 -25.08800 -23.91508 -22.98761 -21.29224 -19.90185 -19.22801 -18.97617 -18.00744 -16.94321 -16.62435 -15.37200 -15.08897 -14.96322 -14.63030 -14.23081 -13.83363 -13.55716 -13.30871 -13.24675 -12.94881 -12.91766 -12.36801 -12.18367 -11.77321 -11.56612 -11.53509 -11.40079 -11.30265 -10.81519 -10.77232 -10.66381 -10.47631 -10.10067 -9.97531 -9.72318 -9.46256 -9.29596 -9.25440 -9.03889 -8.63563 -8.45429 -8.26130 -6.70730 -5.83197 -3.21031 0.67414 1.18763 1.62355 1.84613 2.61781 3.31617 3.41887 3.45047 3.62376 3.75623 4.46802 4.60308 5.17055 5.23026 5.31013 5.36631 5.39579 5.49390 5.64767 5.77153 5.85629 5.96105 6.14209 6.23074 6.27888 6.45672 6.52888 6.62350 6.85666 6.92330 6.97900 7.03906 7.23903 7.26235 7.60226 7.72782 7.97141 8.08685 8.40003 8.74119 9.16572 9.84357 10.37517 11.23353 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.012264 B = 0.004828 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.583580 B = 5798.530558 C = 7059.180325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.001 3.999 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.290 1.290 7 C -0.237 4.237 8 H 0.064 0.936 9 N -0.582 5.582 10 C 0.164 3.836 11 C -0.130 4.130 12 C -0.112 4.112 13 C -0.110 4.110 14 C 0.119 3.881 15 H 0.074 0.926 16 N -0.694 5.694 17 C 0.568 3.432 18 O -0.534 6.534 19 C -0.140 4.140 20 C -0.201 4.201 21 S 0.215 5.785 22 C -0.243 4.243 23 C -0.004 4.004 24 Cl -0.021 7.021 25 C 0.151 3.849 26 H 0.251 0.749 27 H 0.089 0.911 28 H 0.005 0.995 29 H 0.100 0.900 30 H 0.024 0.976 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.038 0.962 35 H 0.398 0.602 36 H 0.180 0.820 37 H 0.176 0.824 38 H 0.037 0.963 39 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.982 -4.830 -11.134 12.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.217 1.217 7 C -0.367 4.367 8 H 0.082 0.918 9 N -0.303 5.303 10 C 0.040 3.960 11 C -0.168 4.168 12 C -0.150 4.150 13 C -0.148 4.148 14 C 0.011 3.989 15 H 0.092 0.908 16 N -0.343 5.343 17 C 0.352 3.648 18 O -0.413 6.413 19 C -0.158 4.158 20 C -0.339 4.339 21 S 0.480 5.520 22 C -0.379 4.379 23 C -0.043 4.043 24 Cl 0.007 6.993 25 C 0.020 3.980 26 H 0.061 0.939 27 H 0.107 0.893 28 H 0.023 0.977 29 H 0.118 0.882 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.232 0.768 36 H 0.198 0.802 37 H 0.193 0.807 38 H 0.055 0.945 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.271 -4.326 -11.701 13.186 hybrid contribution 0.229 0.161 0.794 0.842 sum 4.500 -4.165 -10.907 12.512 Atomic orbital electron populations 1.69972 1.04940 1.24978 1.54659 1.24846 0.95183 0.97929 1.01697 0.86363 0.79584 0.84473 0.77228 1.20471 1.22009 1.21687 1.19201 0.93439 0.85221 1.38800 0.91796 1.44178 1.33510 1.00847 1.51756 1.20185 0.85387 1.00417 0.89969 1.21002 0.98073 0.95543 1.02218 1.20972 0.98586 0.98899 0.96559 1.21668 0.93466 1.02231 0.97419 1.22823 0.91742 0.95860 0.88436 0.90845 1.45845 1.21694 1.31480 1.35241 1.17330 0.81301 0.83962 0.82176 1.90797 1.65064 1.26135 1.59269 1.20152 0.96112 0.98375 1.01116 1.25702 1.05993 1.00490 1.01723 1.83034 1.11196 1.27186 1.30612 1.25362 1.06637 1.01599 1.04307 1.20664 0.93758 0.93318 0.96592 1.98387 1.74115 1.39269 1.87486 1.20744 0.97021 0.88414 0.91780 0.93885 0.89301 0.97679 0.88168 0.95714 0.93262 0.92382 0.90271 0.94279 0.76766 0.80241 0.80662 0.94519 0.94369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.27 9.43 55.49 0.52 -22.74 16 2 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 3 Si 0.89 20.71 29.60 -169.99 -5.03 15.68 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.24 -6.03 9.62 -15.06 -0.14 -6.18 16 8 H 0.06 1.70 7.88 -52.49 -0.41 1.29 16 9 N -0.58 -13.56 2.60 -175.30 -0.46 -14.02 16 10 C 0.16 3.67 5.24 -5.20 -0.03 3.64 16 11 C -0.13 -2.63 5.02 -30.18 -0.15 -2.78 16 12 C -0.11 -1.95 5.76 -28.41 -0.16 -2.12 16 13 C -0.11 -1.93 5.23 -27.19 -0.14 -2.07 16 14 C 0.12 2.21 2.92 -65.96 -0.19 2.02 16 15 H 0.07 1.38 7.57 -51.93 -0.39 0.98 16 16 N -0.69 -12.37 5.05 -53.05 -0.27 -12.64 16 17 C 0.57 10.46 7.64 -12.64 -0.10 10.36 16 18 O -0.53 -11.17 14.71 5.24 0.08 -11.10 16 19 C -0.14 -2.19 5.98 -104.61 -0.63 -2.81 16 20 C -0.20 -2.58 10.38 29.95 0.31 -2.27 16 21 S 0.22 2.16 23.02 -107.50 -2.47 -0.32 16 22 C -0.24 -2.73 11.00 28.88 0.32 -2.41 16 23 C 0.00 -0.06 6.49 -38.99 -0.25 -0.32 16 24 Cl -0.02 -0.32 27.24 -51.86 -1.41 -1.74 16 25 C 0.15 3.19 4.76 -4.82 -0.02 3.16 16 26 H 0.25 6.43 8.31 -40.82 -0.34 6.09 16 27 H 0.09 2.23 6.05 -51.93 -0.31 1.92 16 28 H 0.01 0.11 8.12 -51.93 -0.42 -0.31 16 29 H 0.10 2.31 5.29 -51.93 -0.27 2.03 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.01 6.28 -51.93 -0.33 0.68 16 33 H 0.08 1.57 6.59 -51.93 -0.34 1.23 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.40 6.73 6.94 -40.82 -0.28 6.44 16 36 H 0.18 2.10 7.01 -52.49 -0.37 1.73 16 37 H 0.18 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.04 0.74 6.88 -51.93 -0.36 0.38 16 39 H 0.04 0.89 7.83 -51.93 -0.41 0.48 16 LS Contribution 335.18 15.07 5.05 5.05 Total: -1.00 -28.08 335.18 -10.00 -38.07 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -4.73 Total: 5.56 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -1.28 Total: -1.82 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: -0.20 Total: -49.40 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.08 Total: -11.10 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.47 Total: -0.32 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.41 Total: -1.74 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.08 -10.00 -38.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034257846.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.760 kcal (2) G-P(sol) polarization free energy of solvation -28.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.09 seconds