Wall clock time and date at job start Tue Mar 31 2020 15:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 119.99663 * 2 1 4 4 H 1.48504 * 109.47178 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47407 * 300.00092 * 3 2 1 6 6 H 1.48500 * 109.47262 * 60.00578 * 3 2 1 7 7 C 1.38812 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00045 * 160.41455 * 7 2 1 9 9 N 1.36932 * 119.99993 * 340.41168 * 7 2 1 10 10 C 1.50172 * 120.53765 * 336.71380 * 9 7 2 11 11 C 1.46242 * 107.53226 * 109.61285 * 10 9 7 12 12 C 1.52529 * 114.27966 * 58.40656 * 11 10 9 13 13 C 1.50118 * 105.41457 * 270.59263 * 12 11 10 14 14 C 1.54846 * 110.81657 * 97.68267 * 13 12 11 15 15 H 1.09003 * 109.35984 * 81.19995 * 14 13 12 16 16 N 1.46500 * 109.35969 * 200.92435 * 14 13 12 17 17 C 1.34773 * 119.99931 * 205.27294 * 16 14 13 18 18 O 1.21638 * 120.00236 * 0.02562 * 17 16 14 19 19 C 1.47165 * 120.00012 * 180.02562 * 17 16 14 20 20 C 1.36053 * 123.46222 * 359.70251 * 19 17 16 21 21 S 1.70445 * 110.82768 * 180.26968 * 20 19 17 22 22 C 1.75508 * 92.45836 * 0.02562 * 21 20 19 23 23 C 1.32842 * 110.57881 * 359.97438 * 22 21 20 24 24 Cl 1.73602 * 123.46750 * 179.97438 * 23 22 21 25 25 C 1.43133 * 120.56404 * 156.66156 * 9 7 2 26 26 H 0.96997 * 120.00526 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.84890 * 350.10254 * 10 9 7 28 28 H 1.09003 * 109.84465 * 229.11548 * 10 9 7 29 29 H 1.09000 * 108.51794 * 297.16842 * 11 10 9 30 30 H 1.08996 * 108.40090 * 179.55826 * 11 10 9 31 31 H 1.09000 * 110.24607 * 151.61400 * 12 11 10 32 32 H 1.08996 * 110.24730 * 29.56545 * 12 11 10 33 33 H 1.09000 * 109.21003 * 337.33934 * 13 12 11 34 34 H 1.09000 * 109.17085 * 218.00275 * 13 12 11 35 35 H 0.96999 * 119.99769 * 25.27653 * 16 14 13 36 36 H 1.07993 * 124.58477 * 0.23402 * 20 19 17 37 37 H 1.07997 * 124.71013 * 179.97438 * 22 21 20 38 38 H 1.09000 * 108.13173 * 149.80184 * 25 9 7 39 39 H 1.09001 * 107.99227 * 33.34008 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0434 -1.2291 -0.3141 9 7 1.3850 -2.3539 0.3965 10 6 0.1860 -2.2990 1.2990 11 6 -0.9805 -2.6847 0.5057 12 6 -0.8821 -4.0720 -0.1207 13 6 -0.2315 -3.8612 -1.4570 14 6 1.2873 -4.1533 -1.3819 15 1 1.4522 -5.2286 -1.4503 16 7 1.9658 -3.4862 -2.4958 17 6 3.1393 -3.9650 -2.9540 18 8 3.6349 -4.9513 -2.4429 19 6 3.8213 -3.2945 -4.0725 20 6 3.3284 -2.1920 -4.6991 21 16 4.3715 -1.6885 -5.9496 22 6 5.5049 -2.9900 -5.6307 23 6 5.0795 -3.7432 -4.6226 24 17 5.9457 -5.1252 -4.0281 25 6 1.8626 -3.6298 -0.0424 26 1 -0.4851 0.8400 0.0004 27 1 0.0557 -1.2863 1.6802 28 1 0.3153 -2.9939 2.1288 29 1 -1.1141 -1.9536 -0.2916 30 1 -1.8591 -2.6573 1.1501 31 1 -1.8765 -4.4996 -0.2483 32 1 -0.2667 -4.7233 0.5000 33 1 -0.3830 -2.8284 -1.7707 34 1 -0.6894 -4.5285 -2.1873 35 1 1.5704 -2.6998 -2.9035 36 1 2.4014 -1.7025 -4.4396 37 1 6.4211 -3.1555 -6.1781 38 1 1.6371 -4.3616 0.7333 39 1 2.9466 -3.5685 -0.1391 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034257846.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:21 Heat of formation + Delta-G solvation = 4.182583 kcal Electronic energy + Delta-G solvation = -24358.943502 eV Core-core repulsion = 20840.351507 eV Total energy + Delta-G solvation = -3518.591996 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.02503 -39.46963 -38.19067 -36.86444 -35.80732 -34.75970 -32.90355 -31.93417 -30.37824 -27.94177 -26.38884 -25.34628 -24.70120 -22.59404 -21.44846 -20.80219 -20.19226 -19.11876 -18.55054 -18.06358 -16.95233 -16.71995 -16.34369 -16.04355 -15.66467 -15.52484 -15.09861 -14.64772 -14.38181 -14.26856 -14.02780 -13.88608 -13.71834 -13.39758 -13.22945 -13.17468 -12.65465 -12.57995 -12.46479 -12.32072 -12.27113 -11.88782 -11.77990 -11.73563 -11.28946 -11.12712 -10.91528 -10.72460 -10.44494 -10.06764 -9.90408 -9.33568 -8.57393 -7.78928 -5.18340 -0.33198 0.27855 0.65049 0.74043 1.44350 1.51285 1.58210 1.61767 2.28415 2.42849 2.55050 3.33600 3.61928 3.63511 3.93516 4.03596 4.18972 4.28268 4.39464 4.44469 4.55424 4.62742 4.69402 4.78012 4.85696 4.88196 4.94767 5.08214 5.23887 5.33213 5.37020 5.47797 5.62061 5.70867 5.76906 5.81893 6.24315 6.44891 6.69492 7.22207 7.34605 7.94195 8.44821 9.24552 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.012264 B = 0.004828 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.583580 B = 5798.530558 C = 7059.180325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.031 4.031 3 Si 0.944 3.056 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.296 1.296 7 C -0.243 4.243 8 H 0.046 0.954 9 N -0.591 5.591 10 C 0.167 3.833 11 C -0.121 4.121 12 C -0.105 4.105 13 C -0.099 4.099 14 C 0.127 3.873 15 H 0.074 0.926 16 N -0.693 5.693 17 C 0.564 3.436 18 O -0.568 6.568 19 C -0.175 4.175 20 C -0.208 4.208 21 S 0.308 5.692 22 C -0.233 4.233 23 C -0.035 4.035 24 Cl -0.040 7.040 25 C 0.156 3.844 26 H 0.248 0.752 27 H 0.059 0.941 28 H 0.016 0.984 29 H 0.074 0.926 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.402 0.598 36 H 0.187 0.813 37 H 0.205 0.795 38 H 0.045 0.955 39 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.760 -4.316 -12.964 14.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.227 4.227 3 Si 0.774 3.226 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.223 1.223 7 C -0.373 4.373 8 H 0.064 0.936 9 N -0.313 5.313 10 C 0.043 3.957 11 C -0.160 4.160 12 C -0.143 4.143 13 C -0.137 4.137 14 C 0.019 3.981 15 H 0.092 0.908 16 N -0.342 5.342 17 C 0.350 3.650 18 O -0.449 6.449 19 C -0.193 4.193 20 C -0.347 4.347 21 S 0.573 5.427 22 C -0.369 4.369 23 C -0.074 4.074 24 Cl -0.012 7.012 25 C 0.026 3.974 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.034 0.966 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.237 0.763 36 H 0.204 0.796 37 H 0.222 0.778 38 H 0.063 0.937 39 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 4.042 -3.809 -13.552 14.646 hybrid contribution 0.338 0.084 1.307 1.352 sum 4.380 -3.725 -12.245 13.528 Atomic orbital electron populations 1.70092 1.05427 1.24999 1.54914 1.25285 0.95828 0.99685 1.01928 0.85579 0.78336 0.81815 0.76840 1.20902 1.21504 1.22320 1.19116 0.92772 0.86395 1.39044 0.93643 1.44210 1.33881 1.00906 1.52273 1.20123 0.86031 0.99015 0.90488 1.20821 0.97325 0.96629 1.01231 1.20943 1.00217 0.97128 0.95963 1.21550 0.92490 1.01368 0.98268 1.22596 0.92547 0.95700 0.87234 0.90751 1.45806 1.21820 1.31584 1.34983 1.17813 0.81023 0.83598 0.82572 1.90759 1.65829 1.27705 1.60641 1.20003 0.97414 1.00136 1.01784 1.25970 1.06822 0.99550 1.02344 1.82786 1.08267 1.24489 1.27165 1.25825 1.07542 1.00839 1.02696 1.20758 0.94091 0.94140 0.98378 1.98368 1.74376 1.40468 1.87970 1.20697 0.95288 0.87837 0.93580 0.94282 0.92299 0.96551 0.90805 0.94639 0.90466 0.92099 0.92509 0.91777 0.76310 0.79565 0.77810 0.93728 0.97328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.28 9.43 21.65 0.20 -47.07 16 2 C -0.03 -1.58 4.91 84.86 0.42 -1.16 16 3 Si 0.94 42.76 29.60 68.60 2.03 44.79 16 4 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 7 C -0.24 -12.60 9.62 84.03 0.81 -11.79 16 8 H 0.05 2.50 7.88 -2.91 -0.02 2.48 16 9 N -0.59 -27.93 2.60 -708.53 -1.84 -29.77 16 10 C 0.17 7.47 5.24 83.58 0.44 7.91 16 11 C -0.12 -4.81 5.02 28.36 0.14 -4.67 16 12 C -0.10 -3.43 5.76 29.51 0.17 -3.26 16 13 C -0.10 -3.33 5.23 30.30 0.16 -3.17 16 14 C 0.13 4.70 2.92 46.27 0.14 4.84 16 15 H 0.07 2.77 7.57 -2.39 -0.02 2.75 16 16 N -0.69 -25.00 5.05 -439.99 -2.22 -27.22 16 17 C 0.56 21.19 7.64 86.59 0.66 21.85 16 18 O -0.57 -24.56 14.71 -4.15 -0.06 -24.62 16 19 C -0.18 -5.44 5.98 -19.85 -0.12 -5.56 16 20 C -0.21 -5.02 10.38 67.31 0.70 -4.32 16 21 S 0.31 5.11 23.02 -56.49 -1.30 3.81 16 22 C -0.23 -4.61 11.00 66.64 0.73 -3.88 16 23 C -0.04 -1.00 6.49 22.68 0.15 -0.85 16 24 Cl -0.04 -1.24 27.24 -2.72 -0.07 -1.31 16 25 C 0.16 6.67 4.76 87.65 0.42 7.09 16 26 H 0.25 12.71 8.31 -92.71 -0.77 11.94 16 27 H 0.06 3.00 6.05 -2.39 -0.01 2.99 16 28 H 0.02 0.69 8.12 -2.39 -0.02 0.67 16 29 H 0.07 3.38 5.29 -2.39 -0.01 3.37 16 30 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.06 1.98 6.28 -2.39 -0.02 1.97 16 33 H 0.06 2.21 6.59 -2.39 -0.02 2.20 16 34 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.40 13.67 6.94 -92.71 -0.64 13.03 16 36 H 0.19 4.10 7.01 -2.91 -0.02 4.08 16 37 H 0.20 2.74 8.06 -2.91 -0.02 2.71 16 38 H 0.04 1.81 6.88 -2.39 -0.02 1.79 16 39 H 0.01 0.41 7.83 -2.39 -0.02 0.39 16 Total: -1.00 -61.99 335.18 1.99 -60.00 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.45 Total: 18.37 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 4.81 Total: 3.03 kcal Atomic # 7 Polarization: -100.21 SS G_CDS: -3.86 Total: -104.07 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.06 Total: -24.62 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: 5.11 SS G_CDS: -1.30 Total: 3.81 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -0.07 Total: -1.31 kcal Total: -61.99 1.99 -60.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034257846.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.184 kcal (2) G-P(sol) polarization free energy of solvation -61.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds