Wall clock time and date at job start Tue Mar 31 2020 15:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99691 * 2 1 4 4 H 1.48504 * 109.47183 * 274.74270 * 3 2 1 5 5 H 1.48501 * 109.47132 * 34.74126 * 3 2 1 6 6 H 1.48508 * 109.47282 * 154.74359 * 3 2 1 7 7 C 1.38810 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99672 * 199.52174 * 7 2 1 9 9 N 1.36928 * 120.00178 * 19.52583 * 7 2 1 10 10 C 1.50172 * 120.54049 * 31.14657 * 9 7 2 11 11 C 1.46234 * 107.53671 * 109.60584 * 10 9 7 12 12 C 1.52533 * 114.27216 * 58.41022 * 11 10 9 13 13 C 1.50126 * 105.41780 * 270.59564 * 12 11 10 14 14 C 1.54839 * 110.78113 * 97.70666 * 13 12 11 15 15 H 1.08997 * 109.35964 * 81.31490 * 14 13 12 16 16 N 1.46495 * 109.36112 * 200.90563 * 14 13 12 17 17 C 1.34773 * 120.00176 * 204.99996 * 16 14 13 18 18 O 1.21701 * 120.00238 * 359.97438 * 17 16 14 19 19 C 1.46573 * 120.00164 * 180.02562 * 17 16 14 20 20 C 1.36679 * 125.45354 * 179.72350 * 19 17 16 21 21 C 1.37524 * 113.28677 * 179.80060 * 20 19 17 22 22 Cl 1.73601 * 122.46135 * 180.21700 * 21 20 19 23 23 C 1.33880 * 115.07884 * 0.48521 * 21 20 19 24 24 S 1.70607 * 110.95925 * 359.73090 * 23 21 20 25 25 C 1.43430 * 120.53909 * 211.16892 * 9 7 2 26 26 H 0.97001 * 120.00604 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.84045 * 350.09790 * 10 9 7 28 28 H 1.09003 * 109.84831 * 229.12076 * 10 9 7 29 29 H 1.08992 * 108.52526 * 297.17138 * 11 10 9 30 30 H 1.08993 * 108.40351 * 179.56042 * 11 10 9 31 31 H 1.09001 * 110.24717 * 151.62171 * 12 11 10 32 32 H 1.09003 * 110.25175 * 29.56960 * 12 11 10 33 33 H 1.09005 * 109.20845 * 218.03323 * 13 12 11 34 34 H 1.09000 * 109.20582 * 337.38033 * 13 12 11 35 35 H 0.97005 * 119.99790 * 24.99603 * 16 14 13 36 36 H 1.08000 * 123.35090 * 359.95306 * 20 19 17 37 37 H 1.08005 * 124.51715 * 179.70723 * 23 21 20 38 38 H 1.08994 * 108.16434 * 33.26337 * 25 9 7 39 39 H 1.09001 * 108.16122 * 149.83043 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3973 2.1044 -1.3953 5 1 1.5012 2.6217 0.7979 6 1 3.5943 1.4134 0.5974 7 6 2.0103 -1.2021 -0.0005 8 1 3.0437 -1.2291 0.3120 9 7 1.3847 -2.3537 -0.3974 10 6 0.2987 -2.3140 -1.4338 11 6 0.8283 -2.9276 -2.6508 12 6 1.3042 -4.3658 -2.4720 13 6 2.7487 -4.2619 -2.0764 14 6 2.9067 -4.3720 -0.5400 15 1 2.8848 -5.4221 -0.2488 16 7 4.1889 -3.7868 -0.1405 17 6 4.7853 -4.1852 1.0005 18 8 4.2584 -5.0309 1.6993 19 6 6.0679 -3.5993 1.4005 20 6 6.7653 -3.9156 2.5325 21 6 7.9429 -3.2165 2.6588 22 17 9.0173 -3.4363 4.0045 23 6 8.1970 -2.3498 1.6705 24 16 6.9519 -2.3717 0.5044 25 6 1.7558 -3.6175 0.1703 26 1 -0.4851 0.8400 0.0004 27 1 0.0155 -1.2805 -1.6334 28 1 -0.5679 -2.8748 -1.0834 29 1 1.6662 -2.3272 -3.0050 30 1 0.0476 -2.9133 -3.4113 31 1 1.2082 -4.9142 -3.4091 32 1 0.7320 -4.8575 -1.6853 33 1 3.3098 -5.0657 -2.5532 34 1 3.1437 -3.3023 -2.4098 35 1 4.6088 -3.1125 -0.6974 36 1 6.4267 -4.6438 3.2546 37 1 9.0733 -1.7205 1.6186 38 1 2.0473 -3.4517 1.2074 39 1 0.8766 -4.2618 0.1692 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034433491.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:10 Heat of formation + Delta-G solvation = 13.527912 kcal Electronic energy + Delta-G solvation = -23870.082852 eV Core-core repulsion = 20351.896101 eV Total energy + Delta-G solvation = -3518.186752 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.72080 -38.32843 -37.55842 -36.08952 -34.32537 -33.37913 -31.05904 -30.65439 -29.39853 -26.28376 -25.34309 -24.00736 -23.12517 -21.36341 -20.09302 -19.57525 -19.09444 -18.46205 -16.60920 -16.41177 -15.76343 -15.46451 -15.13949 -14.92041 -14.44281 -14.02132 -13.74727 -13.55519 -13.34082 -13.18905 -12.91550 -12.67319 -12.32942 -11.92590 -11.74429 -11.53750 -11.45857 -11.19936 -11.04018 -10.99904 -10.86970 -10.64654 -10.24713 -10.02720 -9.92292 -9.76826 -9.64165 -9.44510 -9.10969 -8.83747 -8.61510 -8.36928 -6.62861 -5.82587 -3.28082 0.31578 1.09363 1.44855 2.05765 2.36459 3.31433 3.33804 3.40371 3.41972 3.48832 4.45643 4.66355 4.97109 5.04311 5.15512 5.27665 5.37217 5.44897 5.49396 5.66751 5.78028 5.91735 5.95758 5.99788 6.06273 6.28058 6.36326 6.47070 6.56647 6.70742 6.72766 6.95733 7.01559 7.03427 7.34563 7.65310 7.74515 7.80670 8.43315 8.46581 9.13843 9.82740 10.39595 11.24294 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013068 B = 0.004172 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.191183 B = 6710.491373 C = 8025.395524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.007 3.993 3 Si 0.893 3.107 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.249 4.249 8 H 0.062 0.938 9 N -0.578 5.578 10 C 0.146 3.854 11 C -0.132 4.132 12 C -0.111 4.111 13 C -0.111 4.111 14 C 0.117 3.883 15 H 0.080 0.920 16 N -0.699 5.699 17 C 0.587 3.413 18 O -0.533 6.533 19 C -0.242 4.242 20 C -0.062 4.062 21 C -0.057 4.057 22 Cl -0.052 7.052 23 C -0.241 4.241 24 S 0.258 5.742 25 C 0.148 3.852 26 H 0.253 0.747 27 H 0.100 0.900 28 H 0.021 0.979 29 H 0.056 0.944 30 H 0.038 0.962 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.395 0.605 36 H 0.162 0.838 37 H 0.178 0.822 38 H 0.044 0.956 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.871 -6.488 -2.266 15.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.192 4.192 3 Si 0.723 3.277 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.379 4.379 8 H 0.080 0.920 9 N -0.299 5.299 10 C 0.022 3.978 11 C -0.171 4.171 12 C -0.149 4.149 13 C -0.149 4.149 14 C 0.010 3.990 15 H 0.098 0.902 16 N -0.348 5.348 17 C 0.372 3.628 18 O -0.412 6.412 19 C -0.363 4.363 20 C -0.095 4.095 21 C -0.098 4.098 22 Cl -0.024 7.024 23 C -0.380 4.380 24 S 0.524 5.476 25 C 0.018 3.982 26 H 0.063 0.937 27 H 0.118 0.882 28 H 0.040 0.960 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.229 0.771 36 H 0.180 0.820 37 H 0.195 0.805 38 H 0.062 0.938 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.175 -6.149 -3.008 14.847 hybrid contribution 1.224 0.642 1.286 1.888 sum 14.399 -5.507 -1.722 15.512 Atomic orbital electron populations 1.70016 1.05334 1.25441 1.52940 1.25016 0.95079 0.98357 1.00791 0.86423 0.79504 0.84225 0.77590 1.21458 1.21802 1.20279 1.19047 0.93398 0.85354 1.40064 0.92036 1.43919 1.41184 1.01148 1.43607 1.20356 0.89219 1.02046 0.86155 1.21073 1.00586 0.95109 1.00344 1.20955 0.95756 0.97935 1.00244 1.21672 0.97497 1.01497 0.94207 1.22953 0.83645 0.97618 0.94823 0.90177 1.45923 1.23339 1.42471 1.23108 1.16742 0.82486 0.81962 0.81631 1.90812 1.64890 1.32920 1.52598 1.24739 1.02393 1.06797 1.02374 1.20459 0.91888 0.99946 0.97162 1.19515 0.94971 1.02043 0.93232 1.98361 1.63378 1.96633 1.44014 1.25235 1.06787 1.05632 1.00344 1.83307 1.09331 1.33834 1.21103 1.20663 0.93620 0.88563 0.95375 0.93670 0.88233 0.96027 0.92516 0.94349 0.92756 0.91462 0.93574 0.91066 0.77125 0.82008 0.80495 0.93797 0.94461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.01 11.25 55.49 0.62 -24.38 16 2 C 0.01 0.18 4.93 -17.43 -0.09 0.09 16 3 Si 0.89 20.82 29.60 -169.99 -5.03 15.79 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.25 -6.38 9.54 -15.06 -0.14 -6.53 16 8 H 0.06 1.57 7.90 -52.49 -0.41 1.15 16 9 N -0.58 -13.44 2.56 -175.11 -0.45 -13.89 16 10 C 0.15 3.22 5.37 -5.20 -0.03 3.20 16 11 C -0.13 -2.35 5.20 -30.19 -0.16 -2.51 16 12 C -0.11 -1.69 5.76 -28.40 -0.16 -1.86 16 13 C -0.11 -1.67 5.23 -27.19 -0.14 -1.81 16 14 C 0.12 1.99 2.91 -65.98 -0.19 1.80 16 15 H 0.08 1.37 7.57 -51.93 -0.39 0.98 16 16 N -0.70 -11.46 5.08 -53.26 -0.27 -11.73 16 17 C 0.59 10.11 7.61 -12.90 -0.10 10.01 16 18 O -0.53 -10.76 16.50 5.19 0.09 -10.67 16 19 C -0.24 -3.50 6.45 -36.79 -0.24 -3.74 16 20 C -0.06 -0.84 9.89 -40.41 -0.40 -1.24 16 21 C -0.06 -0.68 6.25 -41.37 -0.26 -0.94 16 22 Cl -0.05 -0.57 29.10 -51.86 -1.51 -2.08 16 23 C -0.24 -2.54 10.77 29.20 0.31 -2.23 16 24 S 0.26 2.92 22.15 -107.50 -2.38 0.54 16 25 C 0.15 3.09 4.78 -4.68 -0.02 3.07 16 26 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 27 H 0.10 2.51 5.65 -51.93 -0.29 2.21 16 28 H 0.02 0.48 8.12 -51.93 -0.42 0.06 16 29 H 0.06 1.05 6.93 -51.93 -0.36 0.69 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.07 6.28 -51.93 -0.33 0.74 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 1.14 6.59 -51.93 -0.34 0.80 16 35 H 0.39 5.90 7.55 -40.82 -0.31 5.59 16 36 H 0.16 2.17 8.06 -52.49 -0.42 1.74 16 37 H 0.18 1.41 8.06 -52.48 -0.42 0.99 16 38 H 0.04 1.04 7.84 -51.93 -0.41 0.63 16 39 H 0.04 0.76 6.89 -51.93 -0.36 0.40 16 LS Contribution 342.45 15.07 5.16 5.16 Total: -1.00 -29.20 342.45 -10.26 -39.46 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -4.87 Total: 4.47 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -1.61 Total: -2.67 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -0.09 Total: -50.00 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.38 Total: 0.54 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.51 Total: -2.08 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.20 -10.26 -39.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034433491.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.983 kcal (2) G-P(sol) polarization free energy of solvation -29.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds