Wall clock time and date at job start Tue Mar 31 2020 15:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99691 * 2 1 4 4 H 1.48504 * 109.47183 * 274.74270 * 3 2 1 5 5 H 1.48501 * 109.47132 * 34.74126 * 3 2 1 6 6 H 1.48508 * 109.47282 * 154.74359 * 3 2 1 7 7 C 1.38810 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99672 * 199.52174 * 7 2 1 9 9 N 1.36928 * 120.00178 * 19.52583 * 7 2 1 10 10 C 1.50172 * 120.54049 * 31.14657 * 9 7 2 11 11 C 1.46234 * 107.53671 * 109.60584 * 10 9 7 12 12 C 1.52533 * 114.27216 * 58.41022 * 11 10 9 13 13 C 1.50126 * 105.41780 * 270.59564 * 12 11 10 14 14 C 1.54839 * 110.78113 * 97.70666 * 13 12 11 15 15 H 1.08997 * 109.35964 * 81.31490 * 14 13 12 16 16 N 1.46495 * 109.36112 * 200.90563 * 14 13 12 17 17 C 1.34773 * 120.00176 * 204.99996 * 16 14 13 18 18 O 1.21701 * 120.00238 * 359.97438 * 17 16 14 19 19 C 1.46573 * 120.00164 * 180.02562 * 17 16 14 20 20 C 1.36679 * 125.45354 * 179.72350 * 19 17 16 21 21 C 1.37524 * 113.28677 * 179.80060 * 20 19 17 22 22 Cl 1.73601 * 122.46135 * 180.21700 * 21 20 19 23 23 C 1.33880 * 115.07884 * 0.48521 * 21 20 19 24 24 S 1.70607 * 110.95925 * 359.73090 * 23 21 20 25 25 C 1.43430 * 120.53909 * 211.16892 * 9 7 2 26 26 H 0.97001 * 120.00604 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.84045 * 350.09790 * 10 9 7 28 28 H 1.09003 * 109.84831 * 229.12076 * 10 9 7 29 29 H 1.08992 * 108.52526 * 297.17138 * 11 10 9 30 30 H 1.08993 * 108.40351 * 179.56042 * 11 10 9 31 31 H 1.09001 * 110.24717 * 151.62171 * 12 11 10 32 32 H 1.09003 * 110.25175 * 29.56960 * 12 11 10 33 33 H 1.09005 * 109.20845 * 218.03323 * 13 12 11 34 34 H 1.09000 * 109.20582 * 337.38033 * 13 12 11 35 35 H 0.97005 * 119.99790 * 24.99603 * 16 14 13 36 36 H 1.08000 * 123.35090 * 359.95306 * 20 19 17 37 37 H 1.08005 * 124.51715 * 179.70723 * 23 21 20 38 38 H 1.08994 * 108.16434 * 33.26337 * 25 9 7 39 39 H 1.09001 * 108.16122 * 149.83043 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3973 2.1044 -1.3953 5 1 1.5012 2.6217 0.7979 6 1 3.5943 1.4134 0.5974 7 6 2.0103 -1.2021 -0.0005 8 1 3.0437 -1.2291 0.3120 9 7 1.3847 -2.3537 -0.3974 10 6 0.2987 -2.3140 -1.4338 11 6 0.8283 -2.9276 -2.6508 12 6 1.3042 -4.3658 -2.4720 13 6 2.7487 -4.2619 -2.0764 14 6 2.9067 -4.3720 -0.5400 15 1 2.8848 -5.4221 -0.2488 16 7 4.1889 -3.7868 -0.1405 17 6 4.7853 -4.1852 1.0005 18 8 4.2584 -5.0309 1.6993 19 6 6.0679 -3.5993 1.4005 20 6 6.7653 -3.9156 2.5325 21 6 7.9429 -3.2165 2.6588 22 17 9.0173 -3.4363 4.0045 23 6 8.1970 -2.3498 1.6705 24 16 6.9519 -2.3717 0.5044 25 6 1.7558 -3.6175 0.1703 26 1 -0.4851 0.8400 0.0004 27 1 0.0155 -1.2805 -1.6334 28 1 -0.5679 -2.8748 -1.0834 29 1 1.6662 -2.3272 -3.0050 30 1 0.0476 -2.9133 -3.4113 31 1 1.2082 -4.9142 -3.4091 32 1 0.7320 -4.8575 -1.6853 33 1 3.3098 -5.0657 -2.5532 34 1 3.1437 -3.3023 -2.4098 35 1 4.6088 -3.1125 -0.6974 36 1 6.4267 -4.6438 3.2546 37 1 9.0733 -1.7205 1.6186 38 1 2.0473 -3.4517 1.2074 39 1 0.8766 -4.2618 0.1692 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034433491.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:09 Heat of formation + Delta-G solvation = -3.156419 kcal Electronic energy + Delta-G solvation = -23870.806339 eV Core-core repulsion = 20351.896101 eV Total energy + Delta-G solvation = -3518.910239 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.06936 -39.56611 -38.81546 -37.01708 -35.88972 -34.98083 -32.82592 -32.11467 -30.55180 -28.01114 -26.60991 -25.35353 -24.78202 -22.65832 -21.49479 -21.00541 -20.31635 -19.61153 -18.48565 -17.48154 -17.09555 -16.84456 -16.58680 -16.47550 -15.79613 -15.64821 -15.11847 -14.93179 -14.57460 -14.28843 -14.25010 -13.92725 -13.74568 -13.44699 -13.30635 -13.00779 -12.71981 -12.57056 -12.44354 -12.41179 -12.35750 -11.95549 -11.89864 -11.63404 -11.49060 -11.24826 -11.13472 -11.02867 -10.53946 -10.20298 -9.97631 -9.52585 -8.53231 -7.82027 -5.30039 -0.69142 0.18132 0.46374 1.04769 1.45220 1.47688 1.49531 1.57401 2.04397 2.22643 2.54060 3.29228 3.62090 3.67020 3.88042 3.94853 4.10814 4.12279 4.32293 4.47933 4.51740 4.54204 4.61546 4.77496 4.82600 4.90169 4.93004 5.04554 5.18096 5.27088 5.28624 5.43718 5.52090 5.62732 5.70151 5.75670 5.85223 6.44979 6.51398 7.11952 7.17442 7.90611 8.45034 9.22524 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013068 B = 0.004172 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.191183 B = 6710.491373 C = 8025.395524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.046 4.046 3 Si 0.951 3.049 4 H -0.282 1.282 5 H -0.303 1.303 6 H -0.265 1.265 7 C -0.245 4.245 8 H 0.062 0.938 9 N -0.590 5.590 10 C 0.152 3.848 11 C -0.125 4.125 12 C -0.104 4.104 13 C -0.102 4.102 14 C 0.127 3.873 15 H 0.082 0.918 16 N -0.696 5.696 17 C 0.585 3.415 18 O -0.574 6.574 19 C -0.282 4.282 20 C -0.059 4.059 21 C -0.074 4.074 22 Cl -0.044 7.044 23 C -0.220 4.220 24 S 0.301 5.699 25 C 0.154 3.846 26 H 0.248 0.752 27 H 0.067 0.933 28 H 0.008 0.992 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.403 0.597 36 H 0.154 0.846 37 H 0.210 0.790 38 H 0.005 0.995 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.364 -6.423 -3.828 17.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.242 4.242 3 Si 0.780 3.220 4 H -0.208 1.208 5 H -0.230 1.230 6 H -0.189 1.189 7 C -0.376 4.376 8 H 0.080 0.920 9 N -0.312 5.312 10 C 0.028 3.972 11 C -0.164 4.164 12 C -0.142 4.142 13 C -0.140 4.140 14 C 0.020 3.980 15 H 0.100 0.900 16 N -0.345 5.345 17 C 0.372 3.628 18 O -0.456 6.456 19 C -0.403 4.403 20 C -0.093 4.093 21 C -0.114 4.114 22 Cl -0.015 7.015 23 C -0.359 4.359 24 S 0.568 5.432 25 C 0.024 3.976 26 H 0.057 0.943 27 H 0.085 0.915 28 H 0.027 0.973 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.238 0.762 36 H 0.171 0.829 37 H 0.227 0.773 38 H 0.024 0.976 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 15.704 -6.097 -4.595 17.461 hybrid contribution 0.474 0.601 1.853 2.005 sum 16.178 -5.496 -2.742 17.305 Atomic orbital electron populations 1.70164 1.06711 1.25582 1.55002 1.25697 0.95733 1.01210 1.01533 0.85486 0.78659 0.80325 0.77518 1.20846 1.23039 1.18917 1.19288 0.93411 0.86157 1.38718 0.92001 1.44082 1.41382 1.01321 1.44381 1.20249 0.88794 1.00408 0.87751 1.20903 1.00767 0.96542 0.98193 1.20941 0.95383 0.96159 1.01727 1.21627 0.97913 1.02417 0.92076 1.22669 0.82387 0.96758 0.96218 0.89991 1.45859 1.22943 1.42581 1.23139 1.17129 0.83220 0.81349 0.81116 1.90777 1.66308 1.34787 1.53685 1.24506 1.02273 1.09378 1.04103 1.20536 0.92412 0.99664 0.96679 1.19464 0.94900 1.02743 0.94297 1.98364 1.62844 1.96676 1.43655 1.25661 1.07021 1.04341 0.98913 1.83131 1.08304 1.31623 1.20097 1.20680 0.95038 0.88049 0.93831 0.94321 0.91453 0.97326 0.93017 0.92537 0.89308 0.92283 0.90415 0.91622 0.76169 0.82871 0.77338 0.97619 0.94608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.48 11.25 21.65 0.24 -53.23 16 2 C -0.05 -2.47 4.93 84.86 0.42 -2.06 16 3 Si 0.95 42.95 29.60 68.60 2.03 44.98 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.25 -12.71 9.54 84.03 0.80 -11.91 16 8 H 0.06 3.15 7.90 -2.91 -0.02 3.12 16 9 N -0.59 -27.88 2.56 -707.92 -1.81 -29.69 16 10 C 0.15 6.79 5.37 83.58 0.45 7.24 16 11 C -0.13 -4.28 5.20 28.36 0.15 -4.14 16 12 C -0.10 -2.90 5.76 29.51 0.17 -2.73 16 13 C -0.10 -2.82 5.23 30.30 0.16 -2.66 16 14 C 0.13 4.25 2.91 46.26 0.13 4.38 16 15 H 0.08 2.76 7.57 -2.39 -0.02 2.74 16 16 N -0.70 -22.38 5.08 -440.62 -2.24 -24.62 16 17 C 0.59 20.27 7.61 86.42 0.66 20.93 16 18 O -0.57 -23.86 16.50 -4.35 -0.07 -23.93 16 19 C -0.28 -7.97 6.45 24.08 0.16 -7.81 16 20 C -0.06 -1.57 9.89 21.74 0.21 -1.36 16 21 C -0.07 -1.63 6.25 21.11 0.13 -1.50 16 22 Cl -0.04 -0.87 29.10 -2.72 -0.08 -0.95 16 23 C -0.22 -3.94 10.77 66.83 0.72 -3.22 16 24 S 0.30 6.09 22.15 -56.49 -1.25 4.84 16 25 C 0.15 6.53 4.78 87.58 0.42 6.95 16 26 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 27 H 0.07 3.49 5.65 -2.39 -0.01 3.48 16 28 H 0.01 0.39 8.12 -2.39 -0.02 0.37 16 29 H 0.05 1.83 6.93 -2.39 -0.02 1.81 16 30 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.06 1.77 6.28 -2.39 -0.01 1.75 16 33 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.07 1.93 6.59 -2.39 -0.02 1.91 16 35 H 0.40 11.49 7.55 -92.70 -0.70 10.79 16 36 H 0.15 4.21 8.06 -2.91 -0.02 4.19 16 37 H 0.21 2.37 8.06 -2.91 -0.02 2.35 16 38 H 0.01 0.27 7.84 -2.39 -0.02 0.25 16 39 H 0.04 1.50 6.89 -2.39 -0.02 1.48 16 Total: -1.00 -65.23 342.45 1.79 -63.45 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.39 Total: 17.04 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 4.58 Total: 2.12 kcal Atomic # 7 Polarization: -103.74 SS G_CDS: -3.81 Total: -107.54 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.07 Total: -23.93 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: 6.09 SS G_CDS: -1.25 Total: 4.84 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.95 kcal Total: -65.23 1.79 -63.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034433491.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.289 kcal (2) G-P(sol) polarization free energy of solvation -65.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds