Wall clock time and date at job start Tue Mar 31 2020 15:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00455 * 2 1 4 4 H 1.48494 * 109.46784 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47014 * 239.99611 * 3 2 1 6 6 H 1.48496 * 109.47313 * 119.99639 * 3 2 1 7 7 C 1.38819 * 119.99532 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99723 * 139.29933 * 7 2 1 9 9 N 1.36931 * 120.00300 * 319.30052 * 7 2 1 10 10 C 1.50172 * 120.53516 * 352.84705 * 9 7 2 11 11 C 1.46239 * 107.53207 * 109.56848 * 10 9 7 12 12 C 1.52524 * 114.27886 * 58.40612 * 11 10 9 13 13 C 1.50120 * 105.41366 * 270.59468 * 12 11 10 14 14 C 1.54842 * 110.81478 * 97.68449 * 13 12 11 15 15 H 1.09006 * 109.35980 * 81.34092 * 14 13 12 16 16 N 1.46504 * 109.35713 * 200.92560 * 14 13 12 17 17 C 1.34777 * 119.99983 * 205.00095 * 16 14 13 18 18 O 1.21638 * 119.99976 * 0.02562 * 17 16 14 19 19 C 1.47178 * 120.00069 * 179.97438 * 17 16 14 20 20 C 1.35973 * 123.45657 * 0.02562 * 19 17 16 21 21 S 1.70441 * 110.84617 * 179.97438 * 20 19 17 22 22 C 1.75497 * 92.45632 * 0.02562 * 21 20 19 23 23 Cl 1.73604 * 124.72107 * 179.97438 * 22 21 20 24 24 C 1.32889 * 110.56673 * 359.75075 * 22 21 20 25 25 C 1.43432 * 120.53643 * 172.56971 * 9 7 2 26 26 H 0.97000 * 120.00306 * 173.66020 * 1 2 3 27 27 H 1.09003 * 109.84670 * 229.07541 * 10 9 7 28 28 H 1.09005 * 109.84636 * 349.99197 * 10 9 7 29 29 H 1.08999 * 108.51819 * 179.65126 * 11 10 9 30 30 H 1.08994 * 108.51986 * 297.32066 * 11 10 9 31 31 H 1.09001 * 110.24660 * 29.56517 * 12 11 10 32 32 H 1.08997 * 110.24669 * 151.61785 * 12 11 10 33 33 H 1.09009 * 109.20655 * 218.02762 * 13 12 11 34 34 H 1.08999 * 109.21295 * 337.33895 * 13 12 11 35 35 H 0.97001 * 119.99999 * 24.99789 * 16 14 13 36 36 H 1.07998 * 124.57613 * 0.02562 * 20 19 17 37 37 H 1.07990 * 123.48290 * 180.21730 * 24 22 21 38 38 H 1.08998 * 108.16066 * 33.30621 * 25 9 7 39 39 H 1.09004 * 108.15966 * 149.87646 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1041 1.6962 -1.2124 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 2.8943 -1.3157 -0.6094 9 7 1.5739 -2.2444 0.7743 10 6 0.4447 -2.0530 1.7456 11 6 -0.7130 -2.7783 1.2239 12 6 -0.4753 -4.2700 1.0125 13 6 0.0458 -4.3962 -0.3897 14 6 1.5914 -4.4893 -0.3961 15 1 1.8927 -5.5132 -0.1745 16 7 2.0951 -4.1134 -1.7195 17 6 3.2892 -4.5740 -2.1418 18 8 3.9486 -5.3021 -1.4244 19 6 3.7950 -4.1969 -3.4715 20 6 3.1173 -3.3889 -4.3299 21 16 3.9960 -3.1641 -5.7729 22 6 5.3137 -4.1816 -5.2178 23 17 6.7463 -4.5316 -6.1339 24 6 5.0648 -4.6431 -3.9968 25 6 2.1840 -3.5379 0.6658 26 1 -0.4850 -0.8349 -0.0928 27 1 0.7234 -2.4530 2.7206 28 1 0.2089 -0.9925 1.8346 29 1 -1.5417 -2.6551 1.9211 30 1 -0.9968 -2.3364 0.2689 31 1 0.2635 -4.6388 1.7241 32 1 -1.4105 -4.8198 1.1184 33 1 -0.3695 -5.2943 -0.8472 34 1 -0.2633 -3.5249 -0.9671 35 1 1.5691 -3.5331 -2.2918 36 1 2.1528 -2.9483 -4.1246 37 1 5.7403 -5.2877 -3.4543 38 1 3.2404 -3.3972 0.4372 39 1 2.1146 -4.0288 1.6366 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034436463.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:25 Heat of formation + Delta-G solvation = 20.880417 kcal Electronic energy + Delta-G solvation = -24035.633151 eV Core-core repulsion = 20517.765228 eV Total energy + Delta-G solvation = -3517.867923 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -39.81961 -38.24887 -37.28795 -36.31044 -34.51384 -33.34956 -31.31193 -30.46155 -29.16187 -26.18522 -25.10657 -24.08632 -22.88732 -21.43935 -20.36788 -19.41224 -19.14589 -18.22608 -17.15821 -16.94035 -15.67523 -15.22509 -15.00302 -14.58072 -14.48908 -13.90929 -13.71594 -13.65821 -13.50071 -13.31138 -12.76480 -12.72929 -12.42158 -12.17601 -11.88849 -11.72627 -11.66642 -11.10183 -10.95108 -10.87514 -10.61229 -10.43435 -10.20873 -10.05596 -9.85106 -9.78746 -9.58945 -9.47814 -9.02676 -8.80737 -8.55305 -8.17552 -6.99576 -6.20861 -3.05515 0.55878 0.88357 1.60972 1.83263 2.00337 3.47638 3.51882 3.56777 3.64687 3.71835 4.57776 4.74927 5.08105 5.11282 5.15957 5.18706 5.27806 5.37280 5.51695 5.64330 5.72365 5.90537 5.94377 5.95582 6.03580 6.21657 6.31047 6.34639 6.55609 6.64844 6.65242 6.82897 6.87876 7.03096 7.20232 7.22033 7.88959 7.98818 8.49432 8.56637 9.04101 9.82102 10.26998 11.09468 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013360 B = 0.003987 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.258105 B = 7021.798875 C = 8299.402892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.015 4.015 3 Si 1.033 2.967 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.352 4.352 8 H 0.063 0.937 9 N -0.586 5.586 10 C 0.129 3.871 11 C -0.135 4.135 12 C -0.110 4.110 13 C -0.112 4.112 14 C 0.115 3.885 15 H 0.077 0.923 16 N -0.695 5.695 17 C 0.574 3.426 18 O -0.548 6.548 19 C -0.139 4.139 20 C -0.202 4.202 21 S 0.230 5.770 22 C -0.177 4.177 23 Cl -0.016 7.016 24 C -0.066 4.066 25 C 0.153 3.847 26 H 0.273 0.727 27 H 0.024 0.976 28 H 0.095 0.905 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.398 0.602 36 H 0.180 0.820 37 H 0.161 0.839 38 H 0.042 0.958 39 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.411 -8.662 -9.817 13.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.217 4.217 3 Si 0.863 3.137 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.223 1.223 7 C -0.480 4.480 8 H 0.081 0.919 9 N -0.308 5.308 10 C 0.005 3.995 11 C -0.174 4.174 12 C -0.148 4.148 13 C -0.150 4.150 14 C 0.007 3.993 15 H 0.095 0.905 16 N -0.343 5.343 17 C 0.359 3.641 18 O -0.427 6.427 19 C -0.157 4.157 20 C -0.340 4.340 21 S 0.494 5.506 22 C -0.319 4.319 23 Cl 0.012 6.988 24 C -0.097 4.097 25 C 0.022 3.978 26 H 0.086 0.914 27 H 0.042 0.958 28 H 0.113 0.887 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.232 0.768 36 H 0.197 0.803 37 H 0.179 0.821 38 H 0.060 0.940 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.573 -6.704 -10.619 13.056 hybrid contribution 0.297 -2.124 0.741 2.269 sum 3.870 -8.828 -9.878 13.801 Atomic orbital electron populations 1.70877 1.07184 1.30569 1.45711 1.25367 0.95760 1.00520 1.00041 0.83991 0.75732 0.77573 0.76395 1.21355 1.22235 1.22297 1.19883 1.09231 0.92453 1.26385 0.91887 1.44361 1.38944 1.05023 1.42446 1.20602 0.86872 1.01581 0.90470 1.21091 0.99429 0.94535 1.02373 1.20943 0.99857 0.97472 0.96549 1.21671 0.94141 1.01139 0.98018 1.22829 0.93592 0.99493 0.83368 0.90510 1.45843 1.19560 1.49987 1.18943 1.17370 0.81531 0.80392 0.84821 1.90758 1.57295 1.38040 1.56640 1.20158 0.95724 1.02959 0.96813 1.25841 1.05763 1.03207 0.99227 1.83093 1.07515 1.45150 1.14859 1.25049 0.97253 1.10741 0.98905 1.98363 1.34257 1.93809 1.72351 1.21145 0.95999 0.99720 0.92816 1.20620 0.96288 0.86210 0.94637 0.91406 0.95791 0.88733 0.94169 0.91062 0.91680 0.92586 0.93598 0.91036 0.76772 0.80321 0.82107 0.93985 0.94347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.52 11.99 55.49 0.67 -23.86 16 2 C -0.01 -0.38 4.53 -17.43 -0.08 -0.46 16 3 Si 1.03 24.22 30.06 -169.99 -5.11 19.12 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.30 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.30 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.35 -9.06 9.46 -15.06 -0.14 -9.21 16 8 H 0.06 1.71 8.05 -52.48 -0.42 1.28 16 9 N -0.59 -13.49 2.62 -175.40 -0.46 -13.95 16 10 C 0.13 2.79 5.22 -5.20 -0.03 2.77 16 11 C -0.14 -2.53 4.96 -30.19 -0.15 -2.68 16 12 C -0.11 -1.76 5.76 -28.41 -0.16 -1.93 16 13 C -0.11 -1.81 5.23 -27.19 -0.14 -1.95 16 14 C 0.11 2.04 2.91 -66.22 -0.19 1.84 16 15 H 0.08 1.37 7.57 -51.93 -0.39 0.97 16 16 N -0.69 -11.86 5.05 -53.30 -0.27 -12.13 16 17 C 0.57 10.17 7.60 -12.63 -0.10 10.08 16 18 O -0.55 -11.27 16.46 5.24 0.09 -11.18 16 19 C -0.14 -2.07 5.98 -104.63 -0.63 -2.69 16 20 C -0.20 -2.52 10.38 29.92 0.31 -2.21 16 21 S 0.23 2.43 23.02 -107.50 -2.47 -0.04 16 22 C -0.18 -2.12 7.01 28.89 0.20 -1.92 16 23 Cl -0.02 -0.17 29.27 -51.86 -1.52 -1.69 16 24 C -0.07 -0.90 10.04 -38.97 -0.39 -1.29 16 25 C 0.15 3.16 4.75 -4.93 -0.02 3.13 16 26 H 0.27 7.18 4.95 -40.82 -0.20 6.98 16 27 H 0.02 0.49 8.13 -51.93 -0.42 0.07 16 28 H 0.09 2.34 5.61 -51.93 -0.29 2.05 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 1.50 4.65 -51.93 -0.24 1.25 16 31 H 0.06 1.04 6.28 -51.93 -0.33 0.72 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.66 8.14 -51.92 -0.42 0.23 16 34 H 0.07 1.29 6.58 -51.93 -0.34 0.95 16 35 H 0.40 6.37 6.94 -40.82 -0.28 6.09 16 36 H 0.18 2.00 7.01 -52.49 -0.37 1.63 16 37 H 0.16 2.18 8.06 -52.49 -0.42 1.75 16 38 H 0.04 0.97 7.81 -51.93 -0.41 0.56 16 39 H 0.04 0.75 6.89 -51.93 -0.36 0.39 16 LS Contribution 336.55 15.07 5.07 5.07 Total: -1.00 -28.87 336.55 -10.07 -38.94 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -4.54 Total: 6.25 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -1.52 Total: -6.51 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -0.06 Total: -49.94 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 24.22 SS G_CDS: -5.11 Total: 19.12 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -2.47 Total: -0.04 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.52 Total: -1.69 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.87 -10.07 -38.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034436463.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.823 kcal (2) G-P(sol) polarization free energy of solvation -28.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds