Wall clock time and date at job start Tue Mar 31 2020 15:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00455 * 2 1 4 4 H 1.48494 * 109.46784 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47014 * 239.99611 * 3 2 1 6 6 H 1.48496 * 109.47313 * 119.99639 * 3 2 1 7 7 C 1.38819 * 119.99532 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99723 * 139.29933 * 7 2 1 9 9 N 1.36931 * 120.00300 * 319.30052 * 7 2 1 10 10 C 1.50172 * 120.53516 * 352.84705 * 9 7 2 11 11 C 1.46239 * 107.53207 * 109.56848 * 10 9 7 12 12 C 1.52524 * 114.27886 * 58.40612 * 11 10 9 13 13 C 1.50120 * 105.41366 * 270.59468 * 12 11 10 14 14 C 1.54842 * 110.81478 * 97.68449 * 13 12 11 15 15 H 1.09006 * 109.35980 * 81.34092 * 14 13 12 16 16 N 1.46504 * 109.35713 * 200.92560 * 14 13 12 17 17 C 1.34777 * 119.99983 * 205.00095 * 16 14 13 18 18 O 1.21638 * 119.99976 * 0.02562 * 17 16 14 19 19 C 1.47178 * 120.00069 * 179.97438 * 17 16 14 20 20 C 1.35973 * 123.45657 * 0.02562 * 19 17 16 21 21 S 1.70441 * 110.84617 * 179.97438 * 20 19 17 22 22 C 1.75497 * 92.45632 * 0.02562 * 21 20 19 23 23 Cl 1.73604 * 124.72107 * 179.97438 * 22 21 20 24 24 C 1.32889 * 110.56673 * 359.75075 * 22 21 20 25 25 C 1.43432 * 120.53643 * 172.56971 * 9 7 2 26 26 H 0.97000 * 120.00306 * 173.66020 * 1 2 3 27 27 H 1.09003 * 109.84670 * 229.07541 * 10 9 7 28 28 H 1.09005 * 109.84636 * 349.99197 * 10 9 7 29 29 H 1.08999 * 108.51819 * 179.65126 * 11 10 9 30 30 H 1.08994 * 108.51986 * 297.32066 * 11 10 9 31 31 H 1.09001 * 110.24660 * 29.56517 * 12 11 10 32 32 H 1.08997 * 110.24669 * 151.61785 * 12 11 10 33 33 H 1.09009 * 109.20655 * 218.02762 * 13 12 11 34 34 H 1.08999 * 109.21295 * 337.33895 * 13 12 11 35 35 H 0.97001 * 119.99999 * 24.99789 * 16 14 13 36 36 H 1.07998 * 124.57613 * 0.02562 * 20 19 17 37 37 H 1.07990 * 123.48290 * 180.21730 * 24 22 21 38 38 H 1.08998 * 108.16066 * 33.30621 * 25 9 7 39 39 H 1.09004 * 108.15966 * 149.87646 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1041 1.6962 -1.2124 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 2.8943 -1.3157 -0.6094 9 7 1.5739 -2.2444 0.7743 10 6 0.4447 -2.0530 1.7456 11 6 -0.7130 -2.7783 1.2239 12 6 -0.4753 -4.2700 1.0125 13 6 0.0458 -4.3962 -0.3897 14 6 1.5914 -4.4893 -0.3961 15 1 1.8927 -5.5132 -0.1745 16 7 2.0951 -4.1134 -1.7195 17 6 3.2892 -4.5740 -2.1418 18 8 3.9486 -5.3021 -1.4244 19 6 3.7950 -4.1969 -3.4715 20 6 3.1173 -3.3889 -4.3299 21 16 3.9960 -3.1641 -5.7729 22 6 5.3137 -4.1816 -5.2178 23 17 6.7463 -4.5316 -6.1339 24 6 5.0648 -4.6431 -3.9968 25 6 2.1840 -3.5379 0.6658 26 1 -0.4850 -0.8349 -0.0928 27 1 0.7234 -2.4530 2.7206 28 1 0.2089 -0.9925 1.8346 29 1 -1.5417 -2.6551 1.9211 30 1 -0.9968 -2.3364 0.2689 31 1 0.2635 -4.6388 1.7241 32 1 -1.4105 -4.8198 1.1184 33 1 -0.3695 -5.2943 -0.8472 34 1 -0.2633 -3.5249 -0.9671 35 1 1.5691 -3.5331 -2.2918 36 1 2.1528 -2.9483 -4.1246 37 1 5.7403 -5.2877 -3.4543 38 1 3.2404 -3.3972 0.4372 39 1 2.1146 -4.0288 1.6366 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034436463.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:24 Heat of formation + Delta-G solvation = 4.920491 kcal Electronic energy + Delta-G solvation = -24036.325225 eV Core-core repulsion = 20517.765228 eV Total energy + Delta-G solvation = -3518.559998 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.19751 -39.72006 -38.35046 -37.36007 -36.11167 -34.93001 -33.04374 -31.96822 -30.35020 -27.86709 -26.43421 -25.47957 -24.57778 -22.76120 -21.86591 -20.95394 -20.33743 -19.33879 -18.97962 -18.14674 -17.15384 -16.67377 -16.39902 -16.04210 -15.91158 -15.54785 -15.30179 -14.88105 -14.65761 -14.54708 -14.30783 -13.97322 -13.84284 -13.70082 -13.45352 -12.76166 -12.72456 -12.65542 -12.50715 -12.42793 -12.15634 -11.93417 -11.85428 -11.74107 -11.53333 -11.27810 -11.17153 -10.98654 -10.38468 -10.04856 -9.97395 -9.52741 -8.84590 -8.25244 -5.05393 -0.46737 -0.05008 0.62272 0.70628 1.05796 1.59048 1.65622 1.84302 2.20164 2.34263 2.67909 3.15589 3.46869 3.74493 3.79615 3.90222 4.01691 4.12908 4.24607 4.39534 4.43723 4.46411 4.51502 4.66227 4.70051 4.75235 4.92925 4.95373 5.07813 5.13313 5.16351 5.30663 5.40587 5.50007 5.60907 5.63660 5.93969 6.50811 6.55824 7.11651 7.19891 7.88809 8.34016 9.07671 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013360 B = 0.003987 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.258105 B = 7021.798875 C = 8299.402892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.051 4.051 3 Si 1.074 2.926 4 H -0.293 1.293 5 H -0.284 1.284 6 H -0.296 1.296 7 C -0.349 4.349 8 H 0.043 0.957 9 N -0.597 5.597 10 C 0.131 3.869 11 C -0.127 4.127 12 C -0.102 4.102 13 C -0.102 4.102 14 C 0.122 3.878 15 H 0.080 0.920 16 N -0.693 5.693 17 C 0.572 3.428 18 O -0.585 6.585 19 C -0.169 4.169 20 C -0.201 4.201 21 S 0.306 5.694 22 C -0.182 4.182 23 Cl -0.003 7.003 24 C -0.082 4.082 25 C 0.157 3.843 26 H 0.272 0.728 27 H 0.036 0.964 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.403 0.597 36 H 0.191 0.809 37 H 0.153 0.847 38 H 0.009 0.991 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.886 -9.082 -11.080 14.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.251 4.251 3 Si 0.902 3.098 4 H -0.219 1.219 5 H -0.210 1.210 6 H -0.224 1.224 7 C -0.478 4.478 8 H 0.061 0.939 9 N -0.320 5.320 10 C 0.007 3.993 11 C -0.167 4.167 12 C -0.140 4.140 13 C -0.140 4.140 14 C 0.014 3.986 15 H 0.098 0.902 16 N -0.341 5.341 17 C 0.358 3.642 18 O -0.467 6.467 19 C -0.186 4.186 20 C -0.340 4.340 21 S 0.570 5.430 22 C -0.325 4.325 23 Cl 0.025 6.975 24 C -0.113 4.113 25 C 0.028 3.972 26 H 0.085 0.915 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.238 0.762 36 H 0.208 0.792 37 H 0.171 0.829 38 H 0.027 0.973 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.049 -7.136 -11.901 14.208 hybrid contribution 0.517 -1.988 1.085 2.323 sum 3.566 -9.124 -10.817 14.593 Atomic orbital electron populations 1.70907 1.07610 1.30735 1.47448 1.26127 0.95984 1.02495 1.00453 0.83391 0.74776 0.74969 0.76635 1.21909 1.21012 1.22411 1.19820 1.08155 0.93590 1.26191 0.93860 1.44390 1.39732 1.05445 1.42415 1.20555 0.87632 1.00188 0.90884 1.20929 0.98402 0.96102 1.01219 1.20935 1.01456 0.95464 0.96164 1.21593 0.92520 1.01560 0.98345 1.22621 0.94760 0.98435 0.82798 0.90215 1.45815 1.19625 1.49973 1.18730 1.17813 0.81117 0.79577 0.85669 1.90721 1.58209 1.39783 1.58021 1.19944 0.97040 1.05428 0.96225 1.26107 1.06188 1.01769 0.99913 1.82879 1.05160 1.42743 1.12171 1.25215 0.98195 1.10489 0.98645 1.98369 1.33591 1.93758 1.71736 1.21071 0.95875 1.00637 0.93672 1.20593 0.94423 0.86019 0.96209 0.91536 0.94588 0.91999 0.92601 0.93363 0.91468 0.89449 0.90841 0.92916 0.76180 0.79222 0.82897 0.97270 0.93314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.71 11.99 21.65 0.26 -50.45 16 2 C -0.05 -2.71 4.53 84.86 0.38 -2.33 16 3 Si 1.07 49.42 30.06 68.60 2.06 51.48 16 4 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 7 C -0.35 -18.26 9.46 84.04 0.80 -17.46 16 8 H 0.04 2.40 8.05 -2.91 -0.02 2.38 16 9 N -0.60 -27.75 2.62 -708.84 -1.86 -29.61 16 10 C 0.13 5.67 5.22 83.58 0.44 6.11 16 11 C -0.13 -4.63 4.96 28.35 0.14 -4.49 16 12 C -0.10 -3.01 5.76 29.51 0.17 -2.84 16 13 C -0.10 -3.13 5.23 30.30 0.16 -2.97 16 14 C 0.12 4.25 2.91 46.09 0.13 4.39 16 15 H 0.08 2.78 7.57 -2.38 -0.02 2.76 16 16 N -0.69 -23.74 5.05 -440.78 -2.23 -25.97 16 17 C 0.57 20.63 7.60 86.59 0.66 21.28 16 18 O -0.58 -24.82 16.46 -4.15 -0.07 -24.89 16 19 C -0.17 -5.00 5.98 -19.87 -0.12 -5.12 16 20 C -0.20 -4.74 10.38 67.29 0.70 -4.04 16 21 S 0.31 5.72 23.02 -56.49 -1.30 4.42 16 22 C -0.18 -4.12 7.01 66.64 0.47 -3.66 16 23 Cl 0.00 -0.06 29.27 -2.72 -0.08 -0.14 16 24 C -0.08 -2.23 10.04 22.68 0.23 -2.00 16 25 C 0.16 6.53 4.75 87.42 0.41 6.95 16 26 H 0.27 14.49 4.95 -92.71 -0.46 14.03 16 27 H 0.04 1.45 8.13 -2.39 -0.02 1.43 16 28 H 0.06 3.11 5.61 -2.38 -0.01 3.09 16 29 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.05 2.00 4.65 -2.39 -0.01 1.99 16 31 H 0.07 1.98 6.28 -2.39 -0.01 1.96 16 32 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.05 1.85 6.58 -2.39 -0.02 1.83 16 35 H 0.40 12.85 6.94 -92.71 -0.64 12.20 16 36 H 0.19 3.96 7.01 -2.91 -0.02 3.94 16 37 H 0.15 4.29 8.06 -2.92 -0.02 4.27 16 38 H 0.01 0.43 7.81 -2.39 -0.02 0.41 16 39 H 0.05 1.89 6.89 -2.39 -0.02 1.88 16 Total: -1.00 -63.08 336.55 2.12 -60.96 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.76 Total: 20.39 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 4.57 Total: -6.19 kcal Atomic # 7 Polarization: -102.21 SS G_CDS: -3.82 Total: -106.03 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.07 Total: -24.89 kcal Atomic # 14 Polarization: 49.42 SS G_CDS: 2.06 Total: 51.48 kcal Atomic # 16 Polarization: 5.72 SS G_CDS: -1.30 Total: 4.42 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -0.08 Total: -0.14 kcal Total: -63.08 2.12 -60.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034436463.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.877 kcal (2) G-P(sol) polarization free energy of solvation -63.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds