Wall clock time and date at job start Tue Mar 31 2020 15:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86798 * 120.00052 * 2 1 4 4 H 1.48504 * 109.47375 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47192 * 300.00190 * 3 2 1 6 6 H 1.48498 * 109.47302 * 59.99912 * 3 2 1 7 7 C 1.38811 * 120.00422 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00422 * 195.68260 * 7 2 1 9 9 N 1.36939 * 119.99750 * 15.67430 * 7 2 1 10 10 C 1.44574 * 118.64914 * 206.51781 * 9 7 2 11 11 C 1.54860 * 109.60581 * 270.70829 * 10 9 7 12 12 C 1.47097 * 110.32396 * 288.73256 * 11 10 9 13 13 C 1.52722 * 114.22583 * 62.82859 * 12 11 10 14 14 C 1.50882 * 109.27311 * 274.83464 * 13 12 11 15 15 H 1.09000 * 109.36929 * 331.92379 * 14 13 12 16 16 N 1.46506 * 109.36673 * 212.18053 * 14 13 12 17 17 C 1.34775 * 120.00032 * 154.74770 * 16 14 13 18 18 O 1.21634 * 120.00087 * 359.97438 * 17 16 14 19 19 C 1.47185 * 119.99643 * 180.02562 * 17 16 14 20 20 C 1.35969 * 123.45935 * 0.02562 * 19 17 16 21 21 S 1.70440 * 110.84678 * 179.73621 * 20 19 17 22 22 C 1.75508 * 92.45489 * 0.02562 * 21 20 19 23 23 Cl 1.73599 * 124.71579 * 180.02562 * 22 21 20 24 24 C 1.32885 * 110.56144 * 0.02562 * 22 21 20 25 25 C 1.47605 * 118.64291 * 26.50131 * 9 7 2 26 26 H 0.96997 * 120.00181 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.44812 * 30.74962 * 10 9 7 28 28 H 1.08999 * 109.45271 * 150.66785 * 10 9 7 29 29 H 1.09009 * 109.32945 * 48.99073 * 11 10 9 30 30 H 1.08998 * 109.33014 * 168.64149 * 11 10 9 31 31 H 1.08996 * 108.51100 * 184.05179 * 12 11 10 32 32 H 1.09002 * 108.50996 * 301.70297 * 12 11 10 33 33 H 1.08995 * 109.45031 * 154.94382 * 13 12 11 34 34 H 1.09004 * 109.61703 * 34.82320 * 13 12 11 35 35 H 0.97008 * 119.99906 * 334.74454 * 16 14 13 36 36 H 1.08001 * 124.57833 * 359.73730 * 20 19 17 37 37 H 1.08003 * 123.47615 * 180.02562 * 24 22 21 38 38 H 1.09003 * 108.94704 * 17.20435 * 25 9 7 39 39 H 1.08999 * 108.94792 * 258.57613 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0600 -1.2196 0.2523 9 7 1.3638 -2.3658 -0.3215 10 6 1.8689 -3.6099 0.2145 11 6 2.9226 -4.2029 -0.7531 12 6 2.2707 -4.7068 -1.9717 13 6 1.5634 -3.6319 -2.7944 14 6 0.1715 -3.4239 -2.2504 15 1 -0.1777 -4.3472 -1.7880 16 7 -0.7291 -3.0588 -3.3468 17 6 -2.0493 -3.3104 -3.2466 18 8 -2.4931 -3.8410 -2.2461 19 6 -2.9539 -2.9441 -4.3483 20 6 -2.5340 -2.3505 -5.4972 21 16 -3.8441 -2.0767 -6.5525 22 6 -4.9948 -2.7757 -5.4266 23 17 -6.7007 -2.9163 -5.7162 24 6 -4.3786 -3.1824 -4.3218 25 6 0.1797 -2.2983 -1.2001 26 1 -0.4850 0.8400 0.0004 27 1 2.3301 -3.4263 1.1850 28 1 1.0463 -4.3153 0.3318 29 1 3.6413 -3.4288 -1.0223 30 1 3.4438 -5.0234 -0.2602 31 1 3.0266 -5.1810 -2.5977 32 1 1.5374 -5.4607 -1.6854 33 1 1.5033 -3.9519 -3.8345 34 1 2.1214 -2.6976 -2.7327 35 1 -0.3751 -2.6359 -4.1449 36 1 -1.5086 -2.0880 -5.7122 37 1 -4.8898 -3.6449 -3.4904 38 1 0.1735 -1.3362 -1.7124 39 1 -0.7194 -2.3779 -0.5891 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034436464.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:28 Heat of formation + Delta-G solvation = 10.710666 kcal Electronic energy + Delta-G solvation = -23612.844467 eV Core-core repulsion = 20094.535551 eV Total energy + Delta-G solvation = -3518.308917 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -39.83952 -38.01953 -37.26167 -36.33549 -34.43978 -33.55323 -30.91367 -30.59335 -29.06921 -26.10249 -25.14419 -24.22029 -23.10236 -21.40949 -20.17808 -19.41239 -19.09538 -18.30384 -17.02812 -16.64904 -15.59348 -15.34371 -14.98555 -14.58563 -14.22367 -14.04781 -13.78292 -13.64811 -13.38409 -13.25420 -12.82599 -12.75208 -12.43148 -12.09701 -11.79757 -11.74821 -11.33767 -11.14725 -11.02789 -10.98127 -10.71379 -10.44443 -10.24733 -10.16711 -9.96839 -9.80440 -9.63782 -9.48433 -9.09806 -8.74054 -8.51991 -8.37667 -6.64718 -5.76258 -3.21341 0.46800 0.80596 1.51699 1.78264 1.94449 3.34575 3.42823 3.45322 3.46057 3.58940 4.50007 4.61712 4.99407 5.08368 5.24045 5.32777 5.44726 5.46619 5.59125 5.62111 5.70671 5.87688 5.97546 6.01561 6.19562 6.32407 6.47372 6.60081 6.64571 6.65958 6.76927 6.89101 6.95835 7.10369 7.37825 7.75123 7.83658 7.87385 8.46943 8.53834 9.24257 9.91415 10.36729 11.29946 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.014536 B = 0.003327 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.735483 B = 8413.352634 C = 9397.217466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.005 3.995 3 Si 0.898 3.102 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.259 4.259 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.154 3.846 11 C -0.147 4.147 12 C -0.098 4.098 13 C -0.116 4.116 14 C 0.120 3.880 15 H 0.076 0.924 16 N -0.709 5.709 17 C 0.574 3.426 18 O -0.530 6.530 19 C -0.134 4.134 20 C -0.209 4.209 21 S 0.226 5.774 22 C -0.174 4.174 23 Cl -0.014 7.014 24 C -0.065 4.065 25 C 0.174 3.826 26 H 0.252 0.748 27 H 0.046 0.954 28 H 0.033 0.967 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.393 0.607 36 H 0.178 0.822 37 H 0.164 0.836 38 H 0.077 0.923 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.847 -6.574 -15.511 17.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.194 4.194 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.388 4.388 8 H 0.084 0.916 9 N -0.309 5.309 10 C 0.026 3.974 11 C -0.188 4.188 12 C -0.136 4.136 13 C -0.154 4.154 14 C 0.015 3.985 15 H 0.094 0.906 16 N -0.359 5.359 17 C 0.358 3.642 18 O -0.407 6.407 19 C -0.152 4.152 20 C -0.348 4.348 21 S 0.490 5.510 22 C -0.317 4.317 23 Cl 0.014 6.986 24 C -0.096 4.096 25 C 0.048 3.952 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.227 0.773 36 H 0.195 0.805 37 H 0.181 0.819 38 H 0.095 0.905 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -6.580 -6.212 -16.214 18.568 hybrid contribution 0.621 0.592 0.990 1.310 sum -5.959 -5.620 -15.224 17.288 Atomic orbital electron populations 1.70099 1.05147 1.25258 1.53821 1.25054 0.95217 0.98334 1.00807 0.86294 0.79388 0.84261 0.77263 1.20271 1.21704 1.21726 1.19237 0.92439 0.84894 1.42270 0.91557 1.43541 1.32463 1.02076 1.52773 1.20742 0.94113 0.88247 0.94319 1.21505 1.00197 0.99706 0.97380 1.20250 0.98967 0.97400 0.97016 1.21315 0.95662 1.00927 0.97453 1.21833 0.87824 1.00915 0.87955 0.90640 1.45994 1.06811 1.62180 1.20955 1.17401 0.82046 0.79046 0.85726 1.90810 1.75981 1.43015 1.30943 1.20210 0.93749 1.05335 0.95875 1.25779 1.05311 1.04904 0.98771 1.83058 0.93361 1.57500 1.17110 1.25043 0.91073 1.13867 1.01708 1.98369 1.07704 1.96860 1.95641 1.21196 0.92041 0.98824 0.97560 1.21312 0.89201 0.95049 0.89612 0.93735 0.93542 0.94900 0.92064 0.93432 0.93682 0.93179 0.93152 0.90002 0.77338 0.80450 0.81900 0.90468 0.94965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.07 11.01 55.49 0.61 -25.46 16 2 C 0.00 0.13 4.87 -17.43 -0.08 0.04 16 3 Si 0.90 21.38 29.58 -169.99 -5.03 16.35 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.26 -6.89 9.44 -15.06 -0.14 -7.04 16 8 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 9 N -0.59 -14.30 2.27 -172.09 -0.39 -14.69 16 10 C 0.15 3.20 5.65 -4.09 -0.02 3.18 16 11 C -0.15 -2.54 5.74 -28.58 -0.16 -2.70 16 12 C -0.10 -1.54 5.17 -29.71 -0.15 -1.69 16 13 C -0.12 -1.88 5.07 -27.94 -0.14 -2.02 16 14 C 0.12 2.24 2.27 -68.50 -0.16 2.08 16 15 H 0.08 1.52 6.73 -51.93 -0.35 1.17 16 16 N -0.71 -11.41 4.94 -55.51 -0.27 -11.68 16 17 C 0.57 9.96 7.75 -12.63 -0.10 9.86 16 18 O -0.53 -11.35 16.45 5.25 0.09 -11.26 16 19 C -0.13 -1.84 5.98 -104.63 -0.63 -2.47 16 20 C -0.21 -2.18 10.38 29.92 0.31 -1.87 16 21 S 0.23 2.03 23.02 -107.50 -2.47 -0.44 16 22 C -0.17 -1.94 7.01 28.89 0.20 -1.73 16 23 Cl -0.01 -0.14 29.27 -51.86 -1.52 -1.66 16 24 C -0.07 -0.85 10.04 -38.98 -0.39 -1.24 16 25 C 0.17 4.16 4.25 -2.94 -0.01 4.14 16 26 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.05 0.98 7.99 -51.93 -0.41 0.57 16 28 H 0.03 0.67 8.06 -51.93 -0.42 0.26 16 29 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.78 7.35 -51.93 -0.38 0.40 16 33 H 0.05 0.69 7.94 -51.93 -0.41 0.27 16 34 H 0.08 1.51 7.48 -51.93 -0.39 1.12 16 35 H 0.39 5.01 7.04 -40.82 -0.29 4.72 16 36 H 0.18 1.40 7.01 -52.49 -0.37 1.03 16 37 H 0.16 2.17 8.06 -52.48 -0.42 1.74 16 38 H 0.08 2.02 6.31 -51.93 -0.33 1.69 16 39 H 0.03 0.90 8.03 -51.93 -0.42 0.49 16 LS Contribution 344.10 15.07 5.19 5.19 Total: -1.00 -31.24 344.10 -10.29 -41.53 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -5.00 Total: 3.58 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -1.48 Total: -1.45 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -0.05 Total: -51.83 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.47 Total: -0.44 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.52 Total: -1.66 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.24 -10.29 -41.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034436464.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.240 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds