Wall clock time and date at job start Tue Mar 31 2020 15:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86798 * 120.00052 * 2 1 4 4 H 1.48504 * 109.47375 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47192 * 300.00190 * 3 2 1 6 6 H 1.48498 * 109.47302 * 59.99912 * 3 2 1 7 7 C 1.38811 * 120.00422 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00422 * 195.68260 * 7 2 1 9 9 N 1.36939 * 119.99750 * 15.67430 * 7 2 1 10 10 C 1.44574 * 118.64914 * 206.51781 * 9 7 2 11 11 C 1.54860 * 109.60581 * 270.70829 * 10 9 7 12 12 C 1.47097 * 110.32396 * 288.73256 * 11 10 9 13 13 C 1.52722 * 114.22583 * 62.82859 * 12 11 10 14 14 C 1.50882 * 109.27311 * 274.83464 * 13 12 11 15 15 H 1.09000 * 109.36929 * 331.92379 * 14 13 12 16 16 N 1.46506 * 109.36673 * 212.18053 * 14 13 12 17 17 C 1.34775 * 120.00032 * 154.74770 * 16 14 13 18 18 O 1.21634 * 120.00087 * 359.97438 * 17 16 14 19 19 C 1.47185 * 119.99643 * 180.02562 * 17 16 14 20 20 C 1.35969 * 123.45935 * 0.02562 * 19 17 16 21 21 S 1.70440 * 110.84678 * 179.73621 * 20 19 17 22 22 C 1.75508 * 92.45489 * 0.02562 * 21 20 19 23 23 Cl 1.73599 * 124.71579 * 180.02562 * 22 21 20 24 24 C 1.32885 * 110.56144 * 0.02562 * 22 21 20 25 25 C 1.47605 * 118.64291 * 26.50131 * 9 7 2 26 26 H 0.96997 * 120.00181 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.44812 * 30.74962 * 10 9 7 28 28 H 1.08999 * 109.45271 * 150.66785 * 10 9 7 29 29 H 1.09009 * 109.32945 * 48.99073 * 11 10 9 30 30 H 1.08998 * 109.33014 * 168.64149 * 11 10 9 31 31 H 1.08996 * 108.51100 * 184.05179 * 12 11 10 32 32 H 1.09002 * 108.50996 * 301.70297 * 12 11 10 33 33 H 1.08995 * 109.45031 * 154.94382 * 13 12 11 34 34 H 1.09004 * 109.61703 * 34.82320 * 13 12 11 35 35 H 0.97008 * 119.99906 * 334.74454 * 16 14 13 36 36 H 1.08001 * 124.57833 * 359.73730 * 20 19 17 37 37 H 1.08003 * 123.47615 * 180.02562 * 24 22 21 38 38 H 1.09003 * 108.94704 * 17.20435 * 25 9 7 39 39 H 1.08999 * 108.94792 * 258.57613 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0600 -1.2196 0.2523 9 7 1.3638 -2.3658 -0.3215 10 6 1.8689 -3.6099 0.2145 11 6 2.9226 -4.2029 -0.7531 12 6 2.2707 -4.7068 -1.9717 13 6 1.5634 -3.6319 -2.7944 14 6 0.1715 -3.4239 -2.2504 15 1 -0.1777 -4.3472 -1.7880 16 7 -0.7291 -3.0588 -3.3468 17 6 -2.0493 -3.3104 -3.2466 18 8 -2.4931 -3.8410 -2.2461 19 6 -2.9539 -2.9441 -4.3483 20 6 -2.5340 -2.3505 -5.4972 21 16 -3.8441 -2.0767 -6.5525 22 6 -4.9948 -2.7757 -5.4266 23 17 -6.7007 -2.9163 -5.7162 24 6 -4.3786 -3.1824 -4.3218 25 6 0.1797 -2.2983 -1.2001 26 1 -0.4850 0.8400 0.0004 27 1 2.3301 -3.4263 1.1850 28 1 1.0463 -4.3153 0.3318 29 1 3.6413 -3.4288 -1.0223 30 1 3.4438 -5.0234 -0.2602 31 1 3.0266 -5.1810 -2.5977 32 1 1.5374 -5.4607 -1.6854 33 1 1.5033 -3.9519 -3.8345 34 1 2.1214 -2.6976 -2.7327 35 1 -0.3751 -2.6359 -4.1449 36 1 -1.5086 -2.0880 -5.7122 37 1 -4.8898 -3.6449 -3.4904 38 1 0.1735 -1.3362 -1.7124 39 1 -0.7194 -2.3779 -0.5891 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034436464.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:27 Heat of formation + Delta-G solvation = -8.467309 kcal Electronic energy + Delta-G solvation = -23613.676087 eV Core-core repulsion = 20094.535551 eV Total energy + Delta-G solvation = -3519.140536 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.19539 -39.44292 -38.30717 -37.33583 -36.07360 -35.20502 -32.69719 -32.07470 -30.20908 -27.93847 -26.36973 -25.81209 -24.69752 -22.66839 -21.58208 -21.02832 -20.30835 -19.30482 -18.58931 -18.13864 -17.18888 -16.94213 -16.12733 -16.10217 -15.65132 -15.56692 -15.27114 -14.79088 -14.62437 -14.56036 -14.24981 -14.08142 -13.81712 -13.71852 -13.00230 -12.94206 -12.84066 -12.68156 -12.64497 -12.41193 -12.16586 -12.04396 -11.86593 -11.82883 -11.53564 -11.39494 -11.15867 -11.00063 -10.50588 -10.10806 -9.95775 -9.48439 -8.65907 -7.83740 -5.32615 -0.44491 -0.02255 0.63695 0.71395 1.08388 1.45289 1.47670 1.58394 2.14087 2.32325 2.53116 3.28729 3.64743 3.79451 3.92536 3.95544 4.08194 4.14962 4.30572 4.41956 4.45824 4.50907 4.65001 4.70434 4.84749 4.95036 4.96033 5.08851 5.14983 5.30112 5.32323 5.38346 5.47399 5.56210 5.64386 5.70012 5.81263 6.39889 6.56588 7.16058 7.24388 7.93462 8.34344 9.20517 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.014536 B = 0.003327 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.735483 B = 8413.352634 C = 9397.217466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.050 4.050 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.289 1.289 6 H -0.298 1.298 7 C -0.260 4.260 8 H 0.071 0.929 9 N -0.601 5.601 10 C 0.145 3.855 11 C -0.132 4.132 12 C -0.101 4.101 13 C -0.106 4.106 14 C 0.136 3.864 15 H 0.059 0.941 16 N -0.700 5.700 17 C 0.570 3.430 18 O -0.585 6.585 19 C -0.170 4.170 20 C -0.194 4.194 21 S 0.316 5.684 22 C -0.185 4.185 23 Cl -0.007 7.007 24 C -0.086 4.086 25 C 0.195 3.805 26 H 0.246 0.754 27 H 0.037 0.963 28 H 0.028 0.972 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.412 0.588 36 H 0.207 0.793 37 H 0.146 0.854 38 H 0.050 0.950 39 H -0.028 1.028 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.104 -6.667 -18.780 20.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.245 4.245 3 Si 0.793 3.207 4 H -0.187 1.187 5 H -0.215 1.215 6 H -0.225 1.225 7 C -0.390 4.390 8 H 0.089 0.911 9 N -0.323 5.323 10 C 0.018 3.982 11 C -0.172 4.172 12 C -0.139 4.139 13 C -0.144 4.144 14 C 0.030 3.970 15 H 0.077 0.923 16 N -0.351 5.351 17 C 0.357 3.643 18 O -0.466 6.466 19 C -0.188 4.188 20 C -0.333 4.333 21 S 0.581 5.419 22 C -0.328 4.328 23 Cl 0.022 6.978 24 C -0.117 4.117 25 C 0.069 3.931 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.249 0.751 36 H 0.224 0.776 37 H 0.163 0.837 38 H 0.068 0.932 39 H -0.010 1.010 Dipole moment (debyes) X Y Z Total from point charges -4.800 -6.323 -19.526 21.078 hybrid contribution 0.011 0.615 1.983 2.076 sum -4.789 -5.708 -17.543 19.060 Atomic orbital electron populations 1.70306 1.06823 1.25438 1.55848 1.25821 0.95859 1.01572 1.01289 0.85242 0.78798 0.79991 0.76637 1.18694 1.21536 1.22522 1.19567 0.92686 0.85799 1.40996 0.91121 1.43758 1.32222 1.02796 1.53538 1.20961 0.95030 0.87053 0.95146 1.21315 0.98579 1.00054 0.97203 1.20275 0.99776 0.97099 0.96708 1.21253 0.92978 1.00525 0.99673 1.21389 0.90237 0.97722 0.87663 0.92254 1.45813 1.06389 1.62066 1.20844 1.17992 0.82515 0.77821 0.85971 1.90772 1.76888 1.45572 1.33369 1.19820 0.93421 1.09219 0.96356 1.26213 1.07633 1.01863 0.97594 1.82834 0.90514 1.54483 1.14092 1.25238 0.92006 1.13528 1.02060 1.98372 1.07111 1.96828 1.95510 1.21087 0.92192 1.00244 0.98181 1.20918 0.86748 0.95764 0.89689 0.94478 0.94457 0.95357 0.92982 0.90560 0.90124 0.93046 0.89297 0.91903 0.75101 0.77568 0.83661 0.93176 1.01008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.97 11.01 21.65 0.24 -56.73 16 2 C -0.05 -2.82 4.87 84.86 0.41 -2.41 16 3 Si 0.96 44.64 29.58 68.60 2.03 46.67 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 6 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 7 C -0.26 -14.13 9.44 84.03 0.79 -13.34 16 8 H 0.07 3.72 7.88 -2.91 -0.02 3.69 16 9 N -0.60 -30.21 2.27 -698.38 -1.58 -31.79 16 10 C 0.14 6.10 5.65 87.37 0.49 6.59 16 11 C -0.13 -4.26 5.74 29.39 0.17 -4.09 16 12 C -0.10 -2.86 5.17 28.67 0.15 -2.71 16 13 C -0.11 -3.25 5.07 29.81 0.15 -3.10 16 14 C 0.14 5.17 2.27 44.62 0.10 5.27 16 15 H 0.06 2.48 6.73 -2.39 -0.02 2.46 16 16 N -0.70 -22.56 4.94 -447.78 -2.21 -24.78 16 17 C 0.57 20.58 7.75 86.59 0.67 21.26 16 18 O -0.58 -26.95 16.45 -4.14 -0.07 -27.02 16 19 C -0.17 -4.68 5.98 -19.87 -0.12 -4.80 16 20 C -0.19 -3.55 10.38 67.29 0.70 -2.85 16 21 S 0.32 4.65 23.02 -56.49 -1.30 3.35 16 22 C -0.19 -3.91 7.01 66.64 0.47 -3.44 16 23 Cl -0.01 -0.13 29.27 -2.72 -0.08 -0.21 16 24 C -0.09 -2.31 10.04 22.68 0.23 -2.08 16 25 C 0.20 9.82 4.25 86.49 0.37 10.19 16 26 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 27 H 0.04 1.60 7.99 -2.39 -0.02 1.58 16 28 H 0.03 1.20 8.06 -2.39 -0.02 1.18 16 29 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 30 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.05 1.48 7.35 -2.39 -0.02 1.46 16 33 H 0.09 2.06 7.94 -2.39 -0.02 2.04 16 34 H 0.06 2.21 7.48 -2.38 -0.02 2.20 16 35 H 0.41 9.80 7.04 -92.70 -0.65 9.15 16 36 H 0.21 2.42 7.01 -2.91 -0.02 2.40 16 37 H 0.15 4.25 8.06 -2.91 -0.02 4.23 16 38 H 0.05 2.76 6.31 -2.39 -0.02 2.74 16 39 H -0.03 -1.73 8.03 -2.39 -0.02 -1.75 16 Total: -1.00 -73.75 344.10 2.04 -71.72 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.43 Total: 14.30 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 4.58 Total: 4.49 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -3.56 Total: -113.30 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.07 Total: -27.02 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: 4.65 SS G_CDS: -1.30 Total: 3.35 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -0.08 Total: -0.21 kcal Total: -73.75 2.04 -71.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034436464.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.251 kcal (2) G-P(sol) polarization free energy of solvation -73.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds