Wall clock time and date at job start Tue Mar 31 2020 15:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00060 * 2 1 4 4 H 1.48498 * 109.47259 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47278 * 300.00301 * 3 2 1 6 6 H 1.48504 * 109.47119 * 60.00245 * 3 2 1 7 7 C 1.38808 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00373 * 195.67142 * 7 2 1 9 9 N 1.36943 * 120.00358 * 15.67235 * 7 2 1 10 10 C 1.44575 * 118.64749 * 206.49310 * 9 7 2 11 11 C 1.54856 * 109.60006 * 270.72649 * 10 9 7 12 12 C 1.47096 * 110.32493 * 288.73174 * 11 10 9 13 13 C 1.52572 * 114.32262 * 62.80113 * 12 11 10 14 14 C 1.50880 * 109.37691 * 274.97651 * 13 12 11 15 15 H 1.09000 * 109.36868 * 331.70954 * 14 13 12 16 16 N 1.46506 * 109.36519 * 212.08758 * 14 13 12 17 17 C 1.34774 * 119.99700 * 155.00353 * 16 14 13 18 18 O 1.21713 * 120.00057 * 359.97438 * 17 16 14 19 19 C 1.46464 * 119.99633 * 180.02562 * 17 16 14 20 20 C 1.36702 * 125.44834 * 179.97438 * 19 17 16 21 21 C 1.37397 * 113.31430 * 179.97438 * 20 19 17 22 22 C 1.34008 * 115.07916 * 0.02562 * 21 20 19 23 23 Cl 1.73602 * 124.53670 * 180.02562 * 22 21 20 24 24 S 1.70623 * 110.93378 * 359.74589 * 22 21 20 25 25 C 1.47607 * 118.63677 * 26.51528 * 9 7 2 26 26 H 0.97000 * 120.00069 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.44648 * 150.68434 * 10 9 7 28 28 H 1.09004 * 109.44553 * 30.76630 * 10 9 7 29 29 H 1.09002 * 109.32827 * 168.47612 * 11 10 9 30 30 H 1.09000 * 109.19070 * 48.90539 * 11 10 9 31 31 H 1.09001 * 108.50930 * 301.55438 * 12 11 10 32 32 H 1.08995 * 108.51597 * 184.05970 * 12 11 10 33 33 H 1.08994 * 109.48985 * 34.95870 * 13 12 11 34 34 H 1.09006 * 109.48552 * 155.00025 * 13 12 11 35 35 H 0.96998 * 120.00075 * 335.00685 * 16 14 13 36 36 H 1.08001 * 123.33926 * 0.02562 * 20 19 17 37 37 H 1.08006 * 122.45951 * 180.02562 * 21 20 19 38 38 H 1.09005 * 108.94477 * 258.54979 * 25 9 7 39 39 H 1.08999 * 108.95084 * 17.17980 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0601 -1.2195 0.2532 9 7 1.3637 -2.3662 -0.3193 10 6 1.8693 -3.6098 0.2174 11 6 2.9229 -4.2030 -0.7501 12 6 2.2710 -4.7079 -1.9682 13 6 1.5627 -3.6366 -2.7919 14 6 0.1713 -3.4254 -2.2480 15 1 -0.1800 -4.3479 -1.7856 16 7 -0.7291 -3.0613 -3.3449 17 6 -2.0504 -3.3061 -3.2416 18 8 -2.4955 -3.8300 -2.2373 19 6 -2.9503 -2.9425 -4.3385 20 6 -4.3031 -3.1393 -4.3524 21 6 -4.9041 -2.7033 -5.5085 22 6 -4.0734 -2.1674 -6.4133 23 17 -4.5690 -1.5399 -7.9542 24 16 -2.4646 -2.1772 -5.8451 25 6 0.1798 -2.2994 -1.1983 26 1 -0.4850 0.8400 0.0004 27 1 1.0467 -4.3152 0.3352 28 1 2.3305 -3.4254 1.1877 29 1 3.4465 -5.0212 -0.2556 30 1 3.6391 -3.4268 -1.0194 31 1 1.5399 -5.4638 -1.6815 32 1 3.0268 -5.1823 -2.5940 33 1 2.1220 -2.7031 -2.7325 34 1 1.5018 -3.9585 -3.8316 35 1 -0.3742 -2.6441 -4.1455 36 1 -4.8455 -3.5917 -3.5354 37 1 -5.9679 -2.7865 -5.6757 38 1 -0.7195 -2.3787 -0.5873 39 1 0.1735 -1.3377 -1.7112 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034512592.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:16 Heat of formation + Delta-G solvation = 12.168286 kcal Electronic energy + Delta-G solvation = -23587.219775 eV Core-core repulsion = 20068.974065 eV Total energy + Delta-G solvation = -3518.245710 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -39.74366 -38.23655 -37.50716 -36.67477 -34.45196 -33.56132 -30.91964 -30.60497 -29.12804 -26.11909 -25.15103 -24.23014 -23.14087 -21.37067 -20.24485 -19.52089 -19.21014 -18.51051 -16.68211 -16.33402 -15.93624 -15.39739 -15.32472 -14.66613 -14.22398 -14.07754 -13.73834 -13.60244 -13.45959 -13.27413 -13.00137 -12.65493 -12.44820 -12.10371 -11.73265 -11.58349 -11.36774 -11.14574 -11.06694 -11.01654 -10.71863 -10.46421 -10.25777 -10.18491 -9.97155 -9.82373 -9.77240 -9.50632 -8.94755 -8.87759 -8.59795 -8.39158 -6.65314 -5.76670 -3.21678 0.20395 0.78550 1.48917 1.88699 2.14299 3.27749 3.36195 3.42135 3.44526 3.46082 4.49881 4.83933 4.93000 5.11950 5.22371 5.32103 5.44896 5.59106 5.61463 5.66615 5.78940 5.93169 6.00102 6.00702 6.16854 6.31770 6.46254 6.58205 6.63503 6.64831 6.73595 6.85868 6.94844 7.09852 7.34931 7.71448 7.79462 7.83554 8.40145 8.47673 9.23799 9.90872 10.36090 11.29679 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013869 B = 0.003534 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.423989 B = 7921.451894 C = 8956.450842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.005 3.995 3 Si 0.898 3.102 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.259 4.259 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.154 3.846 11 C -0.148 4.148 12 C -0.098 4.098 13 C -0.117 4.117 14 C 0.120 3.880 15 H 0.077 0.923 16 N -0.711 5.711 17 C 0.586 3.414 18 O -0.521 6.521 19 C -0.242 4.242 20 C -0.058 4.058 21 C -0.131 4.131 22 C -0.174 4.174 23 Cl -0.013 7.013 24 S 0.248 5.752 25 C 0.174 3.826 26 H 0.253 0.747 27 H 0.033 0.967 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.391 0.609 36 H 0.163 0.837 37 H 0.153 0.847 38 H 0.033 0.967 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.458 -6.730 -14.991 17.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.194 4.194 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.389 4.389 8 H 0.085 0.915 9 N -0.308 5.308 10 C 0.026 3.974 11 C -0.188 4.188 12 C -0.136 4.136 13 C -0.155 4.155 14 C 0.015 3.985 15 H 0.095 0.905 16 N -0.361 5.361 17 C 0.371 3.629 18 O -0.398 6.398 19 C -0.363 4.363 20 C -0.090 4.090 21 C -0.164 4.164 22 C -0.320 4.320 23 Cl 0.015 6.985 24 S 0.514 5.486 25 C 0.048 3.952 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.225 0.775 36 H 0.180 0.820 37 H 0.171 0.829 38 H 0.051 0.949 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.546 -6.426 -14.988 16.929 hybrid contribution -1.009 0.847 -0.136 1.324 sum -5.555 -5.579 -15.123 17.050 Atomic orbital electron populations 1.70099 1.05155 1.25284 1.53806 1.25055 0.95226 0.98347 1.00760 0.86291 0.79395 0.84231 0.77280 1.20258 1.21650 1.21732 1.19238 0.92456 0.84862 1.42314 0.91531 1.43535 1.32462 1.02119 1.52705 1.20746 0.94120 0.88222 0.94337 1.21504 1.00214 0.99742 0.97364 1.20209 0.98989 0.97369 0.97012 1.21293 0.95570 1.01063 0.97533 1.21874 0.87841 1.01003 0.87785 0.90515 1.46071 1.06676 1.62503 1.20822 1.16793 0.81851 0.79089 0.85204 1.90853 1.75824 1.43233 1.29904 1.24972 0.98951 1.12201 1.00201 1.20643 0.92048 0.98261 0.98068 1.20058 1.01825 1.01662 0.92849 1.24959 1.00862 1.11056 0.95158 1.98376 1.90747 1.85109 1.24251 1.83195 1.02619 1.54816 1.07927 1.21316 0.89293 0.95020 0.89594 0.93720 0.94899 0.93509 0.93378 0.92037 0.93186 0.93628 0.89923 0.93054 0.77498 0.82003 0.82909 0.94885 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.00 11.01 55.49 0.61 -25.39 16 2 C 0.00 0.14 4.87 -17.43 -0.08 0.05 16 3 Si 0.90 21.38 29.58 -169.99 -5.03 16.35 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.26 -6.89 9.44 -15.06 -0.14 -7.03 16 8 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 9 N -0.59 -14.24 2.27 -172.09 -0.39 -14.63 16 10 C 0.15 3.18 5.66 -4.09 -0.02 3.16 16 11 C -0.15 -2.53 5.74 -28.59 -0.16 -2.69 16 12 C -0.10 -1.52 5.15 -29.78 -0.15 -1.68 16 13 C -0.12 -1.91 5.06 -28.01 -0.14 -2.05 16 14 C 0.12 2.24 2.27 -68.50 -0.16 2.09 16 15 H 0.08 1.53 6.75 -51.93 -0.35 1.18 16 16 N -0.71 -11.70 4.97 -55.74 -0.28 -11.98 16 17 C 0.59 10.18 7.74 -12.95 -0.10 10.08 16 18 O -0.52 -10.95 16.50 5.18 0.09 -10.87 16 19 C -0.24 -3.35 6.45 -36.83 -0.24 -3.59 16 20 C -0.06 -0.71 10.01 -40.44 -0.40 -1.11 16 21 C -0.13 -1.35 10.08 -41.38 -0.42 -1.77 16 22 C -0.17 -1.84 6.82 29.24 0.20 -1.65 16 23 Cl -0.01 -0.12 29.27 -51.86 -1.52 -1.64 16 24 S 0.25 2.72 22.15 -107.50 -2.38 0.34 16 25 C 0.17 4.14 4.25 -2.94 -0.01 4.12 16 26 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 28 H 0.05 0.98 7.99 -51.93 -0.41 0.57 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.05 0.77 7.36 -51.93 -0.38 0.39 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.53 7.48 -51.93 -0.39 1.15 16 34 H 0.05 0.71 7.94 -51.93 -0.41 0.30 16 35 H 0.39 5.38 7.65 -40.82 -0.31 5.07 16 36 H 0.16 1.89 8.06 -52.49 -0.42 1.47 16 37 H 0.15 1.22 8.06 -52.48 -0.42 0.80 16 38 H 0.03 0.92 8.03 -51.93 -0.42 0.50 16 39 H 0.08 2.04 6.31 -51.93 -0.33 1.71 16 LS Contribution 344.91 15.07 5.20 5.20 Total: -1.00 -30.57 344.91 -10.62 -41.20 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.09 Total: 3.49 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -1.84 Total: -2.07 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: -0.06 Total: -52.00 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -2.38 Total: 0.34 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -1.52 Total: -1.64 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.57 -10.62 -41.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034512592.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.366 kcal (2) G-P(sol) polarization free energy of solvation -30.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds