Wall clock time and date at job start Tue Mar 31 2020 15:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86809 * 119.99697 * 2 1 4 4 H 1.48500 * 109.46838 * 269.99744 * 3 2 1 5 5 H 1.48497 * 109.47306 * 29.99585 * 3 2 1 6 6 H 1.48498 * 109.47000 * 149.99970 * 3 2 1 7 7 C 1.38812 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99693 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00204 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00173 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47228 * 324.99894 * 10 9 7 12 12 C 1.53003 * 109.46968 * 85.00277 * 10 9 7 13 13 C 1.52997 * 109.46860 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47188 * 299.99296 * 13 12 10 15 15 H 1.08999 * 109.47091 * 300.00470 * 14 13 12 16 16 N 1.46499 * 109.47341 * 180.02562 * 14 13 12 17 17 C 1.34777 * 119.99665 * 85.27876 * 16 14 13 18 18 O 1.21713 * 120.00187 * 359.72121 * 17 16 14 19 19 C 1.46438 * 119.99533 * 179.72457 * 17 16 14 20 20 S 1.75829 * 125.46429 * 0.02562 * 19 17 16 21 21 C 1.70612 * 91.58534 * 179.97438 * 20 19 17 22 22 C 1.33770 * 111.00177 * 359.97438 * 21 20 19 23 23 C 1.36800 * 125.46017 * 179.71625 * 19 17 16 24 24 Cl 1.73600 * 123.37847 * 359.97438 * 23 19 17 25 25 C 1.53001 * 109.46944 * 60.00112 * 14 13 12 26 26 C 1.53003 * 109.46735 * 204.99565 * 10 9 7 27 27 H 0.97000 * 120.00043 * 0.02562 * 1 2 3 28 28 H 0.97007 * 119.99495 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.46570 * 299.99230 * 12 10 9 30 30 H 1.08993 * 109.47787 * 59.99440 * 12 10 9 31 31 H 1.09001 * 109.47132 * 179.97438 * 13 12 10 32 32 H 1.08999 * 109.47488 * 59.99523 * 13 12 10 33 33 H 0.97001 * 119.99790 * 264.99588 * 16 14 13 34 34 H 1.07999 * 124.49773 * 179.97438 * 21 20 19 35 35 H 1.07995 * 122.45358 * 180.02562 * 22 21 20 36 36 H 1.08999 * 109.46935 * 60.00262 * 25 14 13 37 37 H 1.09004 * 109.47138 * 180.02562 * 25 14 13 38 38 H 1.09000 * 109.47291 * 60.00890 * 26 10 9 39 39 H 1.08999 * 109.47531 * 300.00143 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 2.9689 -3.5505 -0.5889 12 6 2.4221 -4.0355 1.4376 13 6 3.1877 -5.3602 1.4375 14 6 2.3110 -6.4559 0.8278 15 1 1.4003 -6.5625 1.4171 16 7 3.0439 -7.7244 0.8282 17 6 3.0302 -8.5101 1.9232 18 8 2.4133 -8.1633 2.9135 19 6 3.7578 -9.7809 1.9216 20 16 4.6926 -10.4194 0.5762 21 6 5.1128 -11.8122 1.4675 22 6 4.5756 -11.7779 2.6922 23 6 3.8240 -10.6589 2.9686 24 17 3.0365 -10.3896 4.4921 25 6 1.9471 -6.0771 -0.6092 26 6 1.1810 -4.7521 -0.6090 27 1 -0.4850 0.8400 -0.0004 28 1 0.3556 -2.3880 0.0005 29 1 3.0471 -3.2552 1.8718 30 1 1.5115 -4.1418 2.0271 31 1 3.4473 -5.6299 2.4612 32 1 4.0984 -5.2535 0.8482 33 1 3.5355 -8.0008 0.0390 34 1 5.7304 -12.6150 1.0928 35 1 4.7241 -12.5686 3.4125 36 1 2.8578 -5.9704 -1.1986 37 1 1.3221 -6.8575 -1.0435 38 1 0.9218 -4.4823 -1.6328 39 1 0.2703 -4.8584 -0.0196 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034650456.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:34 Heat of formation + Delta-G solvation = -9.155654 kcal Electronic energy + Delta-G solvation = -22752.503387 eV Core-core repulsion = 19233.333002 eV Total energy + Delta-G solvation = -3519.170385 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -40.14554 -38.58252 -37.63424 -36.33310 -34.86847 -33.09049 -31.00294 -30.40355 -29.97842 -27.40310 -25.31902 -23.62361 -22.42418 -21.89860 -20.74864 -19.94433 -19.57443 -18.73807 -17.04278 -16.79296 -16.06672 -15.71125 -15.31597 -14.98135 -14.20494 -14.02598 -13.91331 -13.75945 -13.69178 -13.49788 -13.21330 -12.96284 -12.53086 -12.03494 -11.80425 -11.78919 -11.71225 -11.43448 -11.09431 -11.04410 -10.80661 -10.75445 -10.65337 -10.18099 -10.09686 -10.00334 -9.75484 -9.57492 -9.39321 -8.99819 -8.92967 -8.83185 -6.91863 -5.73427 -3.01809 -0.04784 0.74698 1.22664 1.79075 2.14386 2.93720 2.96742 3.45248 3.50519 3.52253 4.35793 4.57678 4.61860 4.66421 4.90311 5.04275 5.17787 5.27536 5.43582 5.51005 5.53726 5.61329 5.68628 5.73343 5.85006 5.88672 6.03723 6.23130 6.24855 6.30827 6.48745 6.57542 6.65098 6.74372 7.00846 7.17430 7.32275 7.73018 8.03177 8.45492 9.56392 10.15181 10.49608 11.49370 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.026083 B = 0.002365 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.230871 B =11838.081391 C =12266.478890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.132 4.132 13 C -0.124 4.124 14 C 0.147 3.853 15 H 0.091 0.909 16 N -0.720 5.720 17 C 0.583 3.417 18 O -0.506 6.506 19 C -0.261 4.261 20 S 0.241 5.759 21 C -0.224 4.224 22 C -0.143 4.143 23 C 0.014 3.986 24 Cl -0.012 7.012 25 C -0.119 4.119 26 C -0.120 4.120 27 H 0.254 0.746 28 H 0.383 0.617 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.393 0.607 34 H 0.178 0.822 35 H 0.155 0.845 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.750 -28.131 0.520 30.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.173 4.173 13 C -0.163 4.163 14 C 0.044 3.956 15 H 0.109 0.891 16 N -0.371 5.371 17 C 0.368 3.632 18 O -0.382 6.382 19 C -0.383 4.383 20 S 0.507 5.493 21 C -0.362 4.362 22 C -0.174 4.174 23 C -0.028 4.028 24 Cl 0.017 6.983 25 C -0.158 4.158 26 C -0.159 4.159 27 H 0.064 0.936 28 H 0.217 0.783 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.227 0.773 34 H 0.195 0.805 35 H 0.172 0.828 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.667 -27.176 -0.098 29.194 hybrid contribution 0.185 0.104 1.282 1.299 sum 10.852 -27.072 1.184 29.190 Atomic orbital electron populations 1.69661 1.05085 1.25576 1.57885 1.24738 0.95504 0.97646 1.03199 0.86214 0.78672 0.84014 0.77453 1.21792 1.21825 1.20804 1.19240 0.90958 0.84164 1.42378 0.91242 1.42432 1.05796 0.99796 1.88554 1.20242 0.94275 0.85970 0.92789 0.93602 1.22225 0.99801 0.94437 1.00827 1.21905 0.98559 0.95321 1.00547 1.21172 0.95469 0.81204 0.97758 0.89079 1.46033 1.53498 1.22077 1.15486 1.16755 0.80629 0.81905 0.83909 1.90914 1.42228 1.72606 1.32450 1.24668 1.11658 1.02521 0.99469 1.83122 1.42027 1.10991 1.13198 1.25204 1.07248 1.04717 0.99068 1.19791 1.00478 0.99015 0.98110 1.20391 0.98225 0.94697 0.89488 1.98419 1.77915 1.96051 1.25951 1.21773 1.00897 0.98407 0.94717 1.21762 0.98947 0.93355 1.01834 0.93563 0.78299 0.91766 0.92422 0.92230 0.92273 0.77296 0.80473 0.82771 0.91512 0.91794 0.91297 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.38 13.06 55.49 0.72 -27.66 16 2 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.73 -18.11 5.12 -53.42 -0.27 -18.38 16 10 C 0.18 3.43 2.77 -67.93 -0.19 3.24 16 11 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 12 C -0.13 -2.40 5.50 -26.73 -0.15 -2.55 16 13 C -0.12 -1.85 5.50 -26.73 -0.15 -1.99 16 14 C 0.15 1.94 2.46 -67.93 -0.17 1.78 16 15 H 0.09 1.39 7.57 -51.93 -0.39 0.99 16 16 N -0.72 -8.07 5.07 -55.19 -0.28 -8.35 16 17 C 0.58 7.63 7.74 -12.96 -0.10 7.53 16 18 O -0.51 -8.44 14.74 5.18 0.08 -8.37 16 19 C -0.26 -2.74 6.45 -36.80 -0.24 -2.97 16 20 S 0.24 1.51 22.15 -107.50 -2.38 -0.87 16 21 C -0.22 -1.24 10.92 29.16 0.32 -0.92 16 22 C -0.14 -1.04 10.06 -41.38 -0.42 -1.45 16 23 C 0.01 0.15 6.40 -40.33 -0.26 -0.11 16 24 Cl -0.01 -0.15 27.24 -51.86 -1.41 -1.56 16 25 C -0.12 -1.45 5.39 -26.70 -0.14 -1.59 16 26 C -0.12 -1.90 5.40 -26.70 -0.14 -2.04 16 27 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.38 10.21 7.80 -40.82 -0.32 9.89 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.39 3.30 7.71 -40.82 -0.31 2.98 16 34 H 0.18 0.45 8.06 -52.49 -0.42 0.02 16 35 H 0.15 0.82 8.06 -52.49 -0.42 0.39 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 350.82 15.07 5.29 5.29 Total: -1.00 -32.78 350.82 -10.38 -43.16 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -5.22 Total: 7.54 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -1.88 Total: -8.31 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: 0.17 Total: -54.39 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.08 Total: -8.37 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.38 Total: -0.87 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.41 Total: -1.56 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.78 -10.38 -43.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034650456.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.006 kcal (2) G-P(sol) polarization free energy of solvation -32.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds