Wall clock time and date at job start Tue Mar 31 2020 15:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86809 * 119.99697 * 2 1 4 4 H 1.48500 * 109.46838 * 269.99744 * 3 2 1 5 5 H 1.48497 * 109.47306 * 29.99585 * 3 2 1 6 6 H 1.48498 * 109.47000 * 149.99970 * 3 2 1 7 7 C 1.38812 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99693 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00204 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00173 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47228 * 324.99894 * 10 9 7 12 12 C 1.53003 * 109.46968 * 85.00277 * 10 9 7 13 13 C 1.52997 * 109.46860 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47188 * 299.99296 * 13 12 10 15 15 H 1.08999 * 109.47091 * 300.00470 * 14 13 12 16 16 N 1.46499 * 109.47341 * 180.02562 * 14 13 12 17 17 C 1.34777 * 119.99665 * 85.27876 * 16 14 13 18 18 O 1.21713 * 120.00187 * 359.72121 * 17 16 14 19 19 C 1.46438 * 119.99533 * 179.72457 * 17 16 14 20 20 S 1.75829 * 125.46429 * 0.02562 * 19 17 16 21 21 C 1.70612 * 91.58534 * 179.97438 * 20 19 17 22 22 C 1.33770 * 111.00177 * 359.97438 * 21 20 19 23 23 C 1.36800 * 125.46017 * 179.71625 * 19 17 16 24 24 Cl 1.73600 * 123.37847 * 359.97438 * 23 19 17 25 25 C 1.53001 * 109.46944 * 60.00112 * 14 13 12 26 26 C 1.53003 * 109.46735 * 204.99565 * 10 9 7 27 27 H 0.97000 * 120.00043 * 0.02562 * 1 2 3 28 28 H 0.97007 * 119.99495 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.46570 * 299.99230 * 12 10 9 30 30 H 1.08993 * 109.47787 * 59.99440 * 12 10 9 31 31 H 1.09001 * 109.47132 * 179.97438 * 13 12 10 32 32 H 1.08999 * 109.47488 * 59.99523 * 13 12 10 33 33 H 0.97001 * 119.99790 * 264.99588 * 16 14 13 34 34 H 1.07999 * 124.49773 * 179.97438 * 21 20 19 35 35 H 1.07995 * 122.45358 * 180.02562 * 22 21 20 36 36 H 1.08999 * 109.46935 * 60.00262 * 25 14 13 37 37 H 1.09004 * 109.47138 * 180.02562 * 25 14 13 38 38 H 1.09000 * 109.47291 * 60.00890 * 26 10 9 39 39 H 1.08999 * 109.47531 * 300.00143 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 2.9689 -3.5505 -0.5889 12 6 2.4221 -4.0355 1.4376 13 6 3.1877 -5.3602 1.4375 14 6 2.3110 -6.4559 0.8278 15 1 1.4003 -6.5625 1.4171 16 7 3.0439 -7.7244 0.8282 17 6 3.0302 -8.5101 1.9232 18 8 2.4133 -8.1633 2.9135 19 6 3.7578 -9.7809 1.9216 20 16 4.6926 -10.4194 0.5762 21 6 5.1128 -11.8122 1.4675 22 6 4.5756 -11.7779 2.6922 23 6 3.8240 -10.6589 2.9686 24 17 3.0365 -10.3896 4.4921 25 6 1.9471 -6.0771 -0.6092 26 6 1.1810 -4.7521 -0.6090 27 1 -0.4850 0.8400 -0.0004 28 1 0.3556 -2.3880 0.0005 29 1 3.0471 -3.2552 1.8718 30 1 1.5115 -4.1418 2.0271 31 1 3.4473 -5.6299 2.4612 32 1 4.0984 -5.2535 0.8482 33 1 3.5355 -8.0008 0.0390 34 1 5.7304 -12.6150 1.0928 35 1 4.7241 -12.5686 3.4125 36 1 2.8578 -5.9704 -1.1986 37 1 1.3221 -6.8575 -1.0435 38 1 0.9218 -4.4823 -1.6328 39 1 0.2703 -4.8584 -0.0196 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034650456.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:33 Heat of formation + Delta-G solvation = -30.604641 kcal Electronic energy + Delta-G solvation = -22753.433485 eV Core-core repulsion = 19233.333002 eV Total energy + Delta-G solvation = -3520.100483 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.15471 -39.55918 -38.65602 -37.07851 -36.36321 -34.69078 -32.60697 -31.69182 -30.95806 -28.84887 -26.19366 -25.35011 -23.68473 -23.02156 -21.90085 -21.12414 -20.43092 -19.69048 -18.98466 -17.62711 -16.96157 -16.93165 -16.42193 -16.26572 -15.68123 -15.37732 -15.06671 -14.86513 -14.81842 -14.50108 -14.30626 -14.02849 -13.78741 -13.44324 -13.14699 -13.08436 -12.83066 -12.52142 -12.42568 -12.30652 -12.28739 -12.14830 -12.03477 -11.84900 -11.64723 -11.46439 -11.20842 -11.01740 -10.82704 -10.21469 -9.87039 -9.49155 -8.98329 -7.92510 -5.20479 -0.69749 0.13752 0.71820 1.18995 1.42767 1.47147 1.48905 1.57079 2.01207 2.05063 2.57409 3.40359 3.63511 3.77388 3.85401 3.90144 4.00764 4.15657 4.29059 4.37350 4.40153 4.52707 4.59789 4.64905 4.68125 4.85001 4.93850 4.99253 5.00737 5.11280 5.13564 5.25636 5.28392 5.42899 5.52051 5.55943 5.64679 6.30365 6.43519 7.12111 7.35730 8.13731 8.35835 9.31267 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.026083 B = 0.002365 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.230871 B =11838.081391 C =12266.478890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.970 3.030 4 H -0.285 1.285 5 H -0.298 1.298 6 H -0.271 1.271 7 C -0.235 4.235 8 H 0.075 0.925 9 N -0.739 5.739 10 C 0.173 3.827 11 H 0.050 0.950 12 C -0.122 4.122 13 C -0.112 4.112 14 C 0.155 3.845 15 H 0.067 0.933 16 N -0.706 5.706 17 C 0.580 3.420 18 O -0.554 6.554 19 C -0.305 4.305 20 S 0.307 5.693 21 C -0.203 4.203 22 C -0.160 4.160 23 C 0.004 3.996 24 Cl -0.041 7.041 25 C -0.106 4.106 26 C -0.113 4.113 27 H 0.250 0.750 28 H 0.371 0.629 29 H 0.040 0.960 30 H 0.038 0.962 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.411 0.589 34 H 0.216 0.784 35 H 0.171 0.829 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.376 -30.570 -1.539 33.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.800 3.200 4 H -0.212 1.212 5 H -0.225 1.225 6 H -0.196 1.196 7 C -0.367 4.367 8 H 0.093 0.907 9 N -0.378 5.378 10 C 0.065 3.935 11 H 0.068 0.932 12 C -0.163 4.163 13 C -0.151 4.151 14 C 0.050 3.950 15 H 0.086 0.914 16 N -0.358 5.358 17 C 0.367 3.633 18 O -0.433 6.433 19 C -0.427 4.427 20 S 0.574 5.426 21 C -0.341 4.341 22 C -0.190 4.190 23 C -0.039 4.039 24 Cl -0.012 7.012 25 C -0.144 4.144 26 C -0.152 4.152 27 H 0.058 0.942 28 H 0.203 0.797 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.247 0.753 34 H 0.233 0.767 35 H 0.188 0.812 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.356 -29.667 -2.196 32.609 hybrid contribution -0.540 0.733 1.872 2.082 sum 12.816 -28.934 -0.323 31.647 Atomic orbital electron populations 1.69821 1.06607 1.25890 1.59961 1.25551 0.96361 1.01057 1.04190 0.85179 0.77651 0.79724 0.77478 1.21196 1.22506 1.19584 1.19624 0.91386 0.85302 1.40359 0.90676 1.42680 1.05454 1.01158 1.88556 1.20494 0.94595 0.85002 0.93444 0.93246 1.22026 0.98950 0.95792 0.99569 1.21762 0.99018 0.93870 1.00484 1.20896 0.94372 0.81597 0.98092 0.91444 1.45774 1.53168 1.20966 1.15891 1.17159 0.80073 0.82721 0.83367 1.90887 1.44368 1.73949 1.34144 1.24569 1.13986 1.02068 1.02045 1.82867 1.39376 1.10028 1.10330 1.25733 1.05504 1.04952 0.97947 1.19921 1.00864 0.98696 0.99498 1.20757 0.98736 0.95982 0.88475 1.98403 1.78646 1.96268 1.27915 1.21680 1.01891 0.96743 0.94109 1.21646 0.98346 0.94044 1.01136 0.94164 0.79740 0.94115 0.94324 0.93493 0.90393 0.75257 0.76691 0.81161 0.89129 0.89174 0.91219 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.52 13.06 21.65 0.28 -60.23 16 2 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 3 Si 0.97 46.79 29.55 68.60 2.03 48.82 16 4 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 5 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.23 -13.14 9.93 84.03 0.83 -12.31 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.74 -37.62 5.12 -322.93 -1.65 -39.27 16 10 C 0.17 6.67 2.77 44.99 0.12 6.80 16 11 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 12 C -0.12 -4.56 5.50 30.59 0.17 -4.39 16 13 C -0.11 -3.28 5.50 30.59 0.17 -3.11 16 14 C 0.15 3.92 2.46 44.99 0.11 4.03 16 15 H 0.07 2.08 7.57 -2.39 -0.02 2.06 16 16 N -0.71 -14.53 5.07 -446.73 -2.27 -16.80 16 17 C 0.58 14.87 7.74 86.38 0.67 15.53 16 18 O -0.55 -19.14 14.74 -4.39 -0.06 -19.20 16 19 C -0.31 -5.94 6.45 24.07 0.16 -5.78 16 20 S 0.31 2.67 22.15 -56.49 -1.25 1.42 16 21 C -0.20 -1.35 10.92 66.80 0.73 -0.62 16 22 C -0.16 -1.91 10.06 21.10 0.21 -1.70 16 23 C 0.00 0.08 6.40 21.78 0.14 0.22 16 24 Cl -0.04 -1.01 27.24 -2.72 -0.07 -1.08 16 25 C -0.11 -2.29 5.39 30.61 0.17 -2.12 16 26 C -0.11 -3.46 5.40 30.61 0.17 -3.29 16 27 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 28 H 0.37 20.42 7.80 -92.70 -0.72 19.69 16 29 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.04 1.55 8.14 -2.39 -0.02 1.54 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16 32 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.41 5.50 7.71 -92.71 -0.71 4.79 16 34 H 0.22 -0.22 8.06 -2.91 -0.02 -0.24 16 35 H 0.17 1.39 8.06 -2.91 -0.02 1.36 16 36 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -74.77 350.82 0.76 -74.01 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: -0.35 Total: 23.26 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: 4.11 Total: -10.92 kcal Atomic # 7 Polarization: -112.67 SS G_CDS: -3.64 Total: -116.31 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.06 Total: -19.20 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -1.25 Total: 1.42 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.07 Total: -1.08 kcal Total: -74.77 0.76 -74.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034650456.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.405 kcal (2) G-P(sol) polarization free energy of solvation -74.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds