Wall clock time and date at job start Tue Mar 31 2020 15:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 119.99844 * 2 1 4 4 H 1.48502 * 109.47315 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47431 * 300.00004 * 3 2 1 6 6 H 1.48499 * 109.46918 * 59.99964 * 3 2 1 7 7 C 1.38812 * 120.00617 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00212 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99597 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00035 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47297 * 324.99865 * 10 9 7 12 12 C 1.52997 * 109.47007 * 85.00367 * 10 9 7 13 13 C 1.53002 * 109.46817 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.46972 * 299.99733 * 13 12 10 15 15 H 1.09000 * 109.47380 * 299.99696 * 14 13 12 16 16 N 1.46510 * 109.46858 * 180.02562 * 14 13 12 17 17 C 1.34773 * 119.99925 * 155.00046 * 16 14 13 18 18 O 1.21729 * 120.00098 * 0.02562 * 17 16 14 19 19 C 1.46459 * 120.00213 * 179.97438 * 17 16 14 20 20 C 1.36698 * 125.45036 * 180.02562 * 19 17 16 21 21 C 1.37407 * 113.31400 * 179.97438 * 20 19 17 22 22 C 1.34007 * 115.07546 * 359.97438 * 21 20 19 23 23 Cl 1.73605 * 124.53395 * 180.02562 * 22 21 20 24 24 S 1.70622 * 110.93793 * 359.75207 * 22 21 20 25 25 C 1.52997 * 109.47131 * 60.00459 * 14 13 12 26 26 C 1.52999 * 109.46991 * 299.99311 * 25 14 13 27 27 H 0.96997 * 120.00420 * 0.02562 * 1 2 3 28 28 H 0.97002 * 119.99935 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.47153 * 299.99911 * 12 10 9 30 30 H 1.08996 * 109.46952 * 60.00083 * 12 10 9 31 31 H 1.08996 * 109.47407 * 60.00219 * 13 12 10 32 32 H 1.09000 * 109.46986 * 179.97438 * 13 12 10 33 33 H 0.96994 * 119.99768 * 334.99990 * 16 14 13 34 34 H 1.07998 * 123.34000 * 359.93687 * 20 19 17 35 35 H 1.08003 * 122.46043 * 180.02562 * 21 20 19 36 36 H 1.09002 * 109.47153 * 179.97438 * 25 14 13 37 37 H 1.08993 * 109.47194 * 60.00154 * 25 14 13 38 38 H 1.08993 * 109.47839 * 300.00447 * 26 25 14 39 39 H 1.09000 * 109.47160 * 180.02562 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9689 -3.5505 -0.5900 12 6 2.4220 -4.0355 1.4365 13 6 3.1876 -5.3602 1.4364 14 6 2.3110 -6.4558 0.8265 15 1 1.4003 -6.5626 1.4158 16 7 3.0439 -7.7244 0.8270 17 6 2.3703 -8.8918 0.8268 18 8 1.1531 -8.8921 0.8258 19 6 3.1029 -10.1600 0.8267 20 6 2.5353 -11.4035 0.8260 21 6 3.4574 -12.4222 0.8255 22 6 4.7384 -12.0288 0.8252 23 17 6.0991 -13.1069 0.8240 24 16 4.8534 -10.3264 0.8187 25 6 1.9472 -6.0770 -0.6105 26 6 1.1815 -4.7524 -0.6104 27 1 -0.4850 0.8400 -0.0004 28 1 0.3557 -2.3880 -0.0005 29 1 3.0469 -3.2552 1.8708 30 1 1.5113 -4.1418 2.0258 31 1 4.0984 -5.2535 0.8471 32 1 3.4472 -5.6299 2.4601 33 1 4.0138 -7.7241 0.8274 34 1 1.4680 -11.5688 0.8265 35 1 3.1708 -13.4635 0.8246 36 1 1.3230 -6.8578 -1.0452 37 1 2.8579 -5.9704 -1.1998 38 1 0.2708 -4.8590 -0.0212 39 1 0.9219 -4.4827 -1.6342 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034787792.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:58 Heat of formation + Delta-G solvation = -13.032035 kcal Electronic energy + Delta-G solvation = -22436.065985 eV Core-core repulsion = 18916.727508 eV Total energy + Delta-G solvation = -3519.338478 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -40.21920 -38.57199 -37.80960 -36.95122 -34.93002 -33.13527 -30.97429 -30.43575 -29.87108 -27.41776 -25.32807 -23.67660 -22.35753 -22.06532 -20.78589 -20.07638 -19.60765 -18.76808 -17.06404 -16.76757 -16.30100 -15.82100 -15.33627 -15.04193 -14.36047 -14.23251 -13.93122 -13.80354 -13.76078 -13.56194 -13.16773 -12.87918 -12.63268 -12.27335 -11.97720 -11.87197 -11.81649 -11.47842 -11.35233 -10.90811 -10.83567 -10.76172 -10.73162 -10.31072 -10.21894 -10.12866 -9.73488 -9.57508 -9.28966 -9.18341 -9.04299 -8.86520 -6.94288 -5.75482 -3.04127 -0.12484 0.48711 1.17306 1.61298 1.82024 2.88201 2.91691 3.43250 3.48620 3.51078 4.43977 4.59535 4.62171 4.82748 4.88738 5.01390 5.26216 5.30259 5.49168 5.52809 5.55881 5.62879 5.69388 5.71809 5.80930 5.85582 6.01685 6.18941 6.25118 6.28910 6.42189 6.57326 6.58400 6.69052 6.97283 7.11340 7.25271 7.71045 7.92825 8.43240 9.54243 10.13213 10.47619 11.47273 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.034557 B = 0.002060 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.066161 B =13586.176640 C =14131.307356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.131 4.131 13 C -0.123 4.123 14 C 0.146 3.854 15 H 0.092 0.908 16 N -0.719 5.719 17 C 0.588 3.412 18 O -0.521 6.521 19 C -0.254 4.254 20 C -0.051 4.051 21 C -0.133 4.133 22 C -0.170 4.170 23 Cl -0.008 7.008 24 S 0.250 5.750 25 C -0.121 4.121 26 C -0.121 4.121 27 H 0.254 0.746 28 H 0.384 0.616 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.395 0.605 34 H 0.163 0.837 35 H 0.155 0.845 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.641 -27.365 2.184 29.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.172 4.172 13 C -0.161 4.161 14 C 0.043 3.957 15 H 0.110 0.890 16 N -0.369 5.369 17 C 0.373 3.627 18 O -0.399 6.399 19 C -0.375 4.375 20 C -0.084 4.084 21 C -0.166 4.166 22 C -0.316 4.316 23 Cl 0.021 6.979 24 S 0.516 5.484 25 C -0.161 4.161 26 C -0.160 4.160 27 H 0.064 0.936 28 H 0.217 0.783 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.228 0.772 34 H 0.181 0.819 35 H 0.173 0.827 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.238 -26.263 2.162 29.055 hybrid contribution -0.333 -0.387 0.065 0.514 sum 11.906 -26.650 2.227 29.273 Atomic orbital electron populations 1.69669 1.05090 1.25492 1.57843 1.24751 0.95511 0.97684 1.03188 0.86144 0.78754 0.84286 0.77165 1.20598 1.21922 1.21934 1.19281 0.90977 0.84143 1.42380 0.91166 1.42447 1.05840 0.99786 1.88494 1.20243 0.94421 0.86074 0.92590 0.93570 1.22227 0.99738 0.94009 1.01258 1.21831 0.98711 0.95442 1.00163 1.21209 0.95922 0.80855 0.97758 0.89029 1.46088 1.09901 1.05982 1.74938 1.16844 0.86925 0.82104 0.76807 1.90875 1.12506 1.86841 1.49653 1.24876 0.96876 0.98517 1.17215 1.20673 1.01852 0.89177 0.96698 1.20099 0.89954 1.02203 1.04330 1.25007 0.93893 0.98109 1.14543 1.98394 1.40570 1.61990 1.96985 1.83197 1.01959 0.95912 1.67313 1.21851 1.00649 0.98024 0.95541 1.21762 0.98960 0.93515 1.01748 0.93585 0.78263 0.91450 0.92308 0.91737 0.92095 0.77153 0.81931 0.82712 0.91895 0.91930 0.91978 0.91513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.17 13.06 55.49 0.72 -27.44 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 7 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -17.94 5.12 -53.42 -0.27 -18.21 16 10 C 0.18 3.38 2.77 -67.93 -0.19 3.19 16 11 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 12 C -0.13 -2.21 5.50 -26.73 -0.15 -2.35 16 13 C -0.12 -1.55 5.39 -26.73 -0.14 -1.69 16 14 C 0.15 1.87 2.45 -67.93 -0.17 1.70 16 15 H 0.09 1.35 7.58 -51.93 -0.39 0.95 16 16 N -0.72 -7.75 5.07 -55.18 -0.28 -8.03 16 17 C 0.59 7.17 7.74 -12.95 -0.10 7.07 16 18 O -0.52 -8.25 16.50 5.16 0.09 -8.16 16 19 C -0.25 -2.42 6.45 -36.83 -0.24 -2.65 16 20 C -0.05 -0.44 10.01 -40.44 -0.40 -0.84 16 21 C -0.13 -0.94 10.08 -41.37 -0.42 -1.36 16 22 C -0.17 -1.25 6.82 29.24 0.20 -1.05 16 23 Cl -0.01 -0.05 29.27 -51.86 -1.52 -1.57 16 24 S 0.25 1.78 22.15 -107.50 -2.38 -0.60 16 25 C -0.12 -1.67 5.50 -26.73 -0.15 -1.82 16 26 C -0.12 -2.00 5.39 -26.73 -0.14 -2.15 16 27 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.38 10.18 7.80 -40.82 -0.32 9.86 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.39 3.25 7.71 -40.82 -0.31 2.93 16 34 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.16 0.79 8.06 -52.48 -0.42 0.37 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 354.13 15.07 5.34 5.34 Total: -1.00 -31.56 354.13 -10.69 -42.26 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -5.22 Total: 8.30 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -2.14 Total: -9.12 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: 0.17 Total: -53.68 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.09 Total: -8.16 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.38 Total: -0.60 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -1.52 Total: -1.57 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.56 -10.69 -42.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034787792.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.224 kcal (2) G-P(sol) polarization free energy of solvation -31.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds