Wall clock time and date at job start Tue Mar 31 2020 15:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 119.99844 * 2 1 4 4 H 1.48502 * 109.47315 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47431 * 300.00004 * 3 2 1 6 6 H 1.48499 * 109.46918 * 59.99964 * 3 2 1 7 7 C 1.38812 * 120.00617 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00212 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99597 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00035 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47297 * 324.99865 * 10 9 7 12 12 C 1.52997 * 109.47007 * 85.00367 * 10 9 7 13 13 C 1.53002 * 109.46817 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.46972 * 299.99733 * 13 12 10 15 15 H 1.09000 * 109.47380 * 299.99696 * 14 13 12 16 16 N 1.46510 * 109.46858 * 180.02562 * 14 13 12 17 17 C 1.34773 * 119.99925 * 155.00046 * 16 14 13 18 18 O 1.21729 * 120.00098 * 0.02562 * 17 16 14 19 19 C 1.46459 * 120.00213 * 179.97438 * 17 16 14 20 20 C 1.36698 * 125.45036 * 180.02562 * 19 17 16 21 21 C 1.37407 * 113.31400 * 179.97438 * 20 19 17 22 22 C 1.34007 * 115.07546 * 359.97438 * 21 20 19 23 23 Cl 1.73605 * 124.53395 * 180.02562 * 22 21 20 24 24 S 1.70622 * 110.93793 * 359.75207 * 22 21 20 25 25 C 1.52997 * 109.47131 * 60.00459 * 14 13 12 26 26 C 1.52999 * 109.46991 * 299.99311 * 25 14 13 27 27 H 0.96997 * 120.00420 * 0.02562 * 1 2 3 28 28 H 0.97002 * 119.99935 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.47153 * 299.99911 * 12 10 9 30 30 H 1.08996 * 109.46952 * 60.00083 * 12 10 9 31 31 H 1.08996 * 109.47407 * 60.00219 * 13 12 10 32 32 H 1.09000 * 109.46986 * 179.97438 * 13 12 10 33 33 H 0.96994 * 119.99768 * 334.99990 * 16 14 13 34 34 H 1.07998 * 123.34000 * 359.93687 * 20 19 17 35 35 H 1.08003 * 122.46043 * 180.02562 * 21 20 19 36 36 H 1.09002 * 109.47153 * 179.97438 * 25 14 13 37 37 H 1.08993 * 109.47194 * 60.00154 * 25 14 13 38 38 H 1.08993 * 109.47839 * 300.00447 * 26 25 14 39 39 H 1.09000 * 109.47160 * 180.02562 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9689 -3.5505 -0.5900 12 6 2.4220 -4.0355 1.4365 13 6 3.1876 -5.3602 1.4364 14 6 2.3110 -6.4558 0.8265 15 1 1.4003 -6.5626 1.4158 16 7 3.0439 -7.7244 0.8270 17 6 2.3703 -8.8918 0.8268 18 8 1.1531 -8.8921 0.8258 19 6 3.1029 -10.1600 0.8267 20 6 2.5353 -11.4035 0.8260 21 6 3.4574 -12.4222 0.8255 22 6 4.7384 -12.0288 0.8252 23 17 6.0991 -13.1069 0.8240 24 16 4.8534 -10.3264 0.8187 25 6 1.9472 -6.0770 -0.6105 26 6 1.1815 -4.7524 -0.6104 27 1 -0.4850 0.8400 -0.0004 28 1 0.3557 -2.3880 -0.0005 29 1 3.0469 -3.2552 1.8708 30 1 1.5113 -4.1418 2.0258 31 1 4.0984 -5.2535 0.8471 32 1 3.4472 -5.6299 2.4601 33 1 4.0138 -7.7241 0.8274 34 1 1.4680 -11.5688 0.8265 35 1 3.1708 -13.4635 0.8246 36 1 1.3230 -6.8578 -1.0452 37 1 2.8579 -5.9704 -1.1998 38 1 0.2708 -4.8590 -0.0212 39 1 0.9219 -4.4827 -1.6342 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034787792.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:57 Heat of formation + Delta-G solvation = -32.627800 kcal Electronic energy + Delta-G solvation = -22436.915722 eV Core-core repulsion = 18916.727508 eV Total energy + Delta-G solvation = -3520.188214 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.20470 -39.53673 -38.72405 -37.57075 -36.38122 -34.71674 -32.59662 -31.69683 -30.82026 -28.83230 -26.22941 -25.35526 -23.63432 -23.12498 -21.92163 -21.19723 -20.47980 -19.68157 -19.04821 -17.59366 -17.15962 -16.93248 -16.48436 -16.28259 -15.74047 -15.36911 -15.17494 -15.09731 -14.72000 -14.48714 -14.40057 -14.06164 -13.70662 -13.60673 -13.16106 -13.08115 -12.84558 -12.60633 -12.51818 -12.38644 -12.20527 -12.02361 -11.99064 -11.89209 -11.73267 -11.62810 -11.26472 -11.04524 -10.86153 -10.22116 -9.78554 -9.72577 -8.97629 -7.91465 -5.19733 -0.78284 -0.10308 0.56576 1.04262 1.17316 1.48584 1.49213 1.59107 1.97346 2.05780 2.58248 3.41689 3.61411 3.76541 3.87884 3.89449 4.03215 4.24053 4.26411 4.38367 4.39750 4.52167 4.59920 4.66277 4.74068 4.83732 4.90864 4.99978 5.09212 5.11713 5.13223 5.24181 5.29762 5.39374 5.52928 5.56573 5.66708 6.31055 6.37848 7.04188 7.36321 8.14078 8.36275 9.32609 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.034557 B = 0.002060 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.066161 B =13586.176640 C =14131.307356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.083 4.083 3 Si 0.971 3.029 4 H -0.263 1.263 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.231 4.231 8 H 0.079 0.921 9 N -0.741 5.741 10 C 0.171 3.829 11 H 0.049 0.951 12 C -0.123 4.123 13 C -0.109 4.109 14 C 0.153 3.847 15 H 0.071 0.929 16 N -0.707 5.707 17 C 0.589 3.411 18 O -0.566 6.566 19 C -0.282 4.282 20 C -0.049 4.049 21 C -0.134 4.134 22 C -0.175 4.175 23 Cl 0.000 7.000 24 S 0.295 5.705 25 C -0.111 4.111 26 C -0.112 4.112 27 H 0.249 0.751 28 H 0.370 0.630 29 H 0.053 0.947 30 H 0.044 0.956 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.410 0.590 34 H 0.162 0.838 35 H 0.175 0.825 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.050 0.950 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.506 -29.021 2.308 32.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.274 4.274 3 Si 0.801 3.199 4 H -0.187 1.187 5 H -0.224 1.224 6 H -0.224 1.224 7 C -0.363 4.363 8 H 0.097 0.903 9 N -0.380 5.380 10 C 0.063 3.937 11 H 0.067 0.933 12 C -0.164 4.164 13 C -0.148 4.148 14 C 0.049 3.951 15 H 0.089 0.911 16 N -0.358 5.358 17 C 0.376 3.624 18 O -0.447 6.447 19 C -0.403 4.403 20 C -0.083 4.083 21 C -0.166 4.166 22 C -0.321 4.321 23 Cl 0.028 6.972 24 S 0.561 5.439 25 C -0.150 4.150 26 C -0.151 4.151 27 H 0.058 0.942 28 H 0.201 0.799 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.247 0.753 34 H 0.180 0.820 35 H 0.192 0.808 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 15.197 -27.961 2.290 31.907 hybrid contribution -1.164 -0.009 0.018 1.164 sum 14.033 -27.970 2.307 31.378 Atomic orbital electron populations 1.69832 1.06690 1.25788 1.60117 1.25577 0.96361 1.01157 1.04331 0.85094 0.78399 0.79990 0.76434 1.18710 1.22360 1.22371 1.19680 0.91489 0.85120 1.40034 0.90305 1.42706 1.05449 1.01211 1.88611 1.20502 0.94275 0.84600 0.94275 0.93315 1.22004 0.99463 0.96089 0.98808 1.21697 0.98539 0.92608 1.01950 1.20942 0.95591 0.81919 0.96696 0.91102 1.45854 1.10570 1.04918 1.74420 1.17160 0.86521 0.83026 0.75719 1.90853 1.14515 1.87554 1.51767 1.24668 0.98660 0.97494 1.19526 1.20813 1.02251 0.89307 0.95895 1.20227 0.89535 1.02874 1.03965 1.25213 0.94332 0.98655 1.13912 1.98404 1.40097 1.61761 1.96896 1.82973 0.99235 0.95387 1.66257 1.21744 1.00830 0.95887 0.96563 1.21630 0.98528 0.94356 1.00625 0.94230 0.79872 0.92806 0.93748 0.89514 0.90028 0.75315 0.82047 0.80799 0.92316 0.90138 0.93141 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.28 13.06 21.65 0.28 -60.00 16 2 C -0.08 -4.75 5.50 84.86 0.47 -4.29 16 3 Si 0.97 46.13 29.55 68.60 2.03 48.15 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 5 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 7 C -0.23 -12.69 9.93 84.03 0.83 -11.86 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 9 N -0.74 -37.24 5.12 -322.94 -1.65 -38.89 16 10 C 0.17 6.51 2.77 44.99 0.12 6.63 16 11 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 12 C -0.12 -4.04 5.50 30.59 0.17 -3.87 16 13 C -0.11 -2.49 5.39 30.59 0.16 -2.33 16 14 C 0.15 3.70 2.45 44.99 0.11 3.81 16 15 H 0.07 2.07 7.58 -2.39 -0.02 2.05 16 16 N -0.71 -13.81 5.07 -446.69 -2.27 -16.08 16 17 C 0.59 13.74 7.74 86.39 0.67 14.41 16 18 O -0.57 -18.00 16.50 -4.44 -0.07 -18.08 16 19 C -0.28 -4.94 6.45 24.05 0.16 -4.78 16 20 C -0.05 -0.77 10.01 21.71 0.22 -0.55 16 21 C -0.13 -1.60 10.08 21.11 0.21 -1.39 16 22 C -0.17 -2.14 6.82 66.86 0.46 -1.68 16 23 Cl 0.00 0.00 29.27 -2.72 -0.08 -0.08 16 24 S 0.29 3.41 22.15 -56.49 -1.25 2.16 16 25 C -0.11 -2.92 5.50 30.59 0.17 -2.76 16 26 C -0.11 -3.75 5.39 30.60 0.17 -3.58 16 27 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 28 H 0.37 20.34 7.80 -92.71 -0.72 19.62 16 29 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.41 5.47 7.71 -92.71 -0.71 4.76 16 34 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 35 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 36 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -69.18 354.13 0.55 -68.64 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: -0.35 Total: 26.41 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: 3.91 Total: -12.23 kcal Atomic # 7 Polarization: -111.33 SS G_CDS: -3.64 Total: -114.97 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.07 Total: -18.08 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.15 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -1.25 Total: 2.16 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -0.08 Total: -0.08 kcal Total: -69.18 0.55 -68.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034787792.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.009 kcal (2) G-P(sol) polarization free energy of solvation -69.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds