Wall clock time and date at job start Tue Mar 31 2020 15:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99774 * 2 1 4 4 H 1.48500 * 109.46882 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47131 * 300.00081 * 3 2 1 6 6 H 1.48504 * 109.46962 * 60.00026 * 3 2 1 7 7 C 1.38805 * 120.00186 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99962 * 160.14195 * 7 2 1 9 9 N 1.36934 * 120.00055 * 340.40800 * 7 2 1 10 10 C 1.43435 * 120.53511 * 156.51232 * 9 7 2 11 11 C 1.54397 * 116.39377 * 271.73377 * 10 9 7 12 12 C 1.54845 * 110.07242 * 318.65140 * 11 10 9 13 13 C 1.50124 * 110.81584 * 321.07549 * 12 11 10 14 14 H 1.09003 * 110.37008 * 338.64594 * 13 12 11 15 15 N 1.46494 * 110.25207 * 216.65037 * 13 12 11 16 16 C 1.34778 * 120.00490 * 159.01511 * 15 13 12 17 17 O 1.21724 * 119.99692 * 0.02562 * 16 15 13 18 18 C 1.46440 * 120.00340 * 180.02562 * 16 15 13 19 19 S 1.75819 * 125.46012 * 0.02982 * 18 16 15 20 20 C 1.70609 * 91.58607 * 179.97438 * 19 18 16 21 21 C 1.33773 * 110.99554 * 359.97438 * 20 19 18 22 22 C 1.36789 * 125.45879 * 179.71982 * 18 16 15 23 23 Cl 1.73603 * 123.38088 * 0.02562 * 22 18 16 24 24 C 1.52532 * 105.41511 * 97.68023 * 13 12 11 25 25 C 1.46243 * 114.27359 * 270.59198 * 24 13 12 26 26 H 0.96997 * 120.00315 * 0.02562 * 1 2 3 27 27 H 1.09000 * 108.16231 * 33.31804 * 10 9 7 28 28 H 1.09002 * 108.15941 * 149.87943 * 10 9 7 29 29 H 1.09003 * 109.44813 * 198.44115 * 11 10 9 30 30 H 1.09001 * 109.24077 * 78.73788 * 11 10 9 31 31 H 1.09000 * 109.21333 * 200.72719 * 12 11 10 32 32 H 1.09001 * 109.20655 * 81.41666 * 12 11 10 33 33 H 0.96998 * 119.99972 * 339.02536 * 15 13 12 34 34 H 1.07998 * 124.50128 * 179.97438 * 20 19 18 35 35 H 1.08009 * 122.45026 * 179.97438 * 21 20 19 36 36 H 1.09000 * 108.52530 * 149.35733 * 24 13 12 37 37 H 1.09000 * 108.52516 * 31.83115 * 24 13 12 38 38 H 1.08993 * 109.84883 * 298.89994 * 25 24 13 39 39 H 1.09005 * 109.90053 * 177.94469 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0421 -1.2297 -0.3183 9 7 1.3851 -2.3538 0.3966 10 6 1.8623 -3.6319 -0.0462 11 6 1.2895 -4.1533 -1.3818 12 6 -0.2292 -3.8612 -1.4589 13 6 -0.8815 -4.0719 -0.1233 14 1 -0.2689 -4.7239 0.4994 15 7 -2.2178 -4.6465 -0.2966 16 6 -2.8076 -5.3007 0.7235 17 8 -2.2301 -5.4136 1.7891 18 6 -4.1433 -5.8755 0.5501 19 16 -5.1037 -5.7986 -0.9206 20 6 -6.3753 -6.6723 -0.1922 21 6 -6.0756 -6.9906 1.0720 22 6 -4.8411 -6.5636 1.5044 23 17 -4.2321 -6.8642 3.1021 24 6 -0.9806 -2.6845 0.5028 25 6 0.1850 -2.2990 1.2976 26 1 -0.4850 0.8400 -0.0004 27 1 2.9461 -3.5738 -0.1466 28 1 1.6373 -4.3654 0.7281 29 1 1.4546 -5.2285 -1.4525 30 1 1.7957 -3.6550 -2.2087 31 1 -0.6860 -4.5279 -2.1903 32 1 -0.3802 -2.8283 -1.7728 33 1 -2.6781 -4.5563 -1.1456 34 1 -7.2995 -6.9337 -0.6863 35 1 -6.7519 -7.5449 1.7060 36 1 -1.8616 -2.6561 1.1441 37 1 -1.1132 -1.9533 -0.2946 38 1 0.3132 -2.9937 2.1275 39 1 0.0551 -1.2863 1.6795 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052396917.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:02 Heat of formation + Delta-G solvation = 24.339245 kcal Electronic energy + Delta-G solvation = -23848.350377 eV Core-core repulsion = 20330.632440 eV Total energy + Delta-G solvation = -3517.717937 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -39.81518 -38.33108 -37.31144 -36.12393 -34.56195 -32.55348 -31.18895 -30.56580 -29.63114 -26.24542 -25.20456 -23.77015 -23.09273 -21.42204 -20.03823 -19.66932 -19.20368 -18.33559 -16.68914 -16.42900 -15.78944 -15.26928 -14.93219 -14.82170 -13.94613 -13.84140 -13.72320 -13.71678 -13.58535 -13.17322 -13.00672 -12.72182 -12.00959 -11.78948 -11.58883 -11.50042 -11.39950 -11.20989 -10.89561 -10.76039 -10.73445 -10.33394 -10.15210 -9.98655 -9.79535 -9.60541 -9.50078 -9.23029 -9.15825 -8.73869 -8.64282 -8.31080 -6.68950 -5.76475 -3.15261 0.18487 0.96609 1.44404 2.00295 2.35956 3.27474 3.36134 3.39137 3.47999 3.49911 4.53420 4.58989 4.81359 4.92952 5.33988 5.37997 5.43490 5.61381 5.62850 5.68311 5.73019 5.77635 6.13272 6.27641 6.32487 6.49455 6.51314 6.68261 6.87944 6.90756 6.95184 7.08730 7.14810 7.28569 7.61727 7.75763 7.77043 7.98665 8.41033 8.45787 9.21937 9.90007 10.43565 11.30679 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.020203 B = 0.003235 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.612815 B = 8652.914812 C = 8800.219874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.001 3.999 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.290 1.290 7 C -0.246 4.246 8 H 0.068 0.932 9 N -0.588 5.588 10 C 0.153 3.847 11 C -0.139 4.139 12 C -0.113 4.113 13 C 0.148 3.852 14 H 0.086 0.914 15 N -0.714 5.714 16 C 0.580 3.420 17 O -0.507 6.507 18 C -0.254 4.254 19 S 0.240 5.760 20 C -0.230 4.230 21 C -0.142 4.142 22 C 0.010 3.990 23 Cl -0.015 7.015 24 C -0.132 4.132 25 C 0.169 3.831 26 H 0.251 0.749 27 H 0.033 0.967 28 H 0.029 0.971 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.040 0.960 32 H 0.082 0.918 33 H 0.390 0.610 34 H 0.176 0.824 35 H 0.153 0.847 36 H 0.030 0.970 37 H 0.102 0.898 38 H 0.010 0.990 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.701 -14.205 -2.954 19.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.729 3.271 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.217 1.217 7 C -0.375 4.375 8 H 0.085 0.915 9 N -0.310 5.310 10 C 0.024 3.976 11 C -0.181 4.181 12 C -0.151 4.151 13 C 0.046 3.954 14 H 0.104 0.896 15 N -0.364 5.364 16 C 0.364 3.636 17 O -0.384 6.384 18 C -0.376 4.376 19 S 0.505 5.495 20 C -0.368 4.368 21 C -0.173 4.173 22 C -0.032 4.032 23 Cl 0.014 6.986 24 C -0.172 4.172 25 C 0.045 3.955 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.223 0.777 34 H 0.194 0.806 35 H 0.171 0.829 36 H 0.049 0.951 37 H 0.120 0.880 38 H 0.028 0.972 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.069 -13.512 -3.453 19.113 hybrid contribution -0.400 0.229 0.897 1.008 sum -13.469 -13.283 -2.556 19.089 Atomic orbital electron populations 1.69971 1.05079 1.25029 1.54546 1.24875 0.95213 0.98133 1.01418 0.86282 0.79437 0.84265 0.77125 1.20443 1.21994 1.21716 1.19266 0.93691 0.85362 1.39208 0.91463 1.44298 1.33727 1.00901 1.52029 1.20337 0.96519 0.88302 0.92423 1.22750 0.94819 0.98502 1.02012 1.21707 0.96130 1.02500 0.94761 1.20552 0.80313 0.96280 0.98285 0.89562 1.46175 1.19938 1.56090 1.14187 1.16739 0.83238 0.78793 0.84846 1.90896 1.63483 1.58514 1.25474 1.24785 1.01980 1.11711 0.99074 1.83159 1.05782 1.49465 1.11046 1.25172 1.05619 1.06456 0.99514 1.19763 0.96207 1.04867 0.96476 1.20349 0.94100 0.99640 0.89126 1.98408 1.87188 1.93909 1.19065 1.21336 0.98973 0.94449 1.02419 1.20093 0.84833 1.00587 0.89949 0.93875 0.94908 0.95256 0.93601 0.92589 0.94107 0.89971 0.77697 0.80633 0.82932 0.95100 0.87990 0.97165 0.89078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.59 9.42 55.49 0.52 -24.07 16 2 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 3 Si 0.90 21.39 29.60 -169.99 -5.03 16.36 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.25 -6.56 9.62 -15.06 -0.14 -6.70 16 8 H 0.07 1.79 7.89 -52.48 -0.41 1.38 16 9 N -0.59 -14.41 2.61 -175.41 -0.46 -14.87 16 10 C 0.15 3.23 5.13 -4.93 -0.03 3.20 16 11 C -0.14 -2.55 6.40 -25.03 -0.16 -2.71 16 12 C -0.11 -2.03 5.30 -27.19 -0.14 -2.18 16 13 C 0.15 2.78 2.17 -69.60 -0.15 2.63 16 14 H 0.09 1.77 5.83 -51.93 -0.30 1.47 16 15 N -0.71 -11.35 5.01 -56.83 -0.28 -11.63 16 16 C 0.58 9.74 7.63 -12.96 -0.10 9.64 16 17 O -0.51 -10.25 14.80 5.17 0.08 -10.17 16 18 C -0.25 -3.42 6.45 -36.81 -0.24 -3.65 16 19 S 0.24 2.17 22.15 -107.50 -2.38 -0.21 16 20 C -0.23 -1.78 10.92 29.17 0.32 -1.46 16 21 C -0.14 -1.33 10.06 -41.38 -0.42 -1.75 16 22 C 0.01 0.13 6.40 -40.34 -0.26 -0.13 16 23 Cl -0.01 -0.21 27.24 -51.86 -1.41 -1.62 16 24 C -0.13 -2.90 4.73 -30.18 -0.14 -3.04 16 25 C 0.17 4.09 5.25 -5.20 -0.03 4.06 16 26 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 27 H 0.03 0.68 7.99 -51.93 -0.41 0.27 16 28 H 0.03 0.60 6.90 -51.93 -0.36 0.24 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.04 0.62 7.81 -51.93 -0.41 0.21 16 32 H 0.08 1.72 6.83 -51.93 -0.35 1.37 16 33 H 0.39 5.12 7.56 -40.82 -0.31 4.81 16 34 H 0.18 0.80 8.06 -52.49 -0.42 0.37 16 35 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 36 H 0.03 0.69 7.90 -51.93 -0.41 0.28 16 37 H 0.10 2.48 5.29 -51.93 -0.27 2.21 16 38 H 0.01 0.24 8.13 -51.93 -0.42 -0.18 16 39 H 0.09 2.45 6.05 -51.93 -0.31 2.13 16 LS Contribution 336.00 15.07 5.06 5.06 Total: -1.00 -29.87 336.00 -10.28 -40.15 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -4.81 Total: 3.13 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -1.57 Total: -2.13 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.22 Total: -50.57 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -2.38 Total: -0.21 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.41 Total: -1.62 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.87 -10.28 -40.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052396917.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.491 kcal (2) G-P(sol) polarization free energy of solvation -29.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds