Wall clock time and date at job start Tue Mar 31 2020 15:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99818 * 2 1 4 4 H 1.48497 * 109.46938 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46817 * 299.99537 * 3 2 1 6 6 H 1.48492 * 109.47445 * 59.99640 * 3 2 1 7 7 C 1.38816 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99747 * 195.72884 * 7 2 1 9 9 N 1.36936 * 119.99915 * 15.72318 * 7 2 1 10 10 C 1.44580 * 118.64184 * 206.54048 * 9 7 2 11 11 C 1.54863 * 109.57847 * 270.71385 * 10 9 7 12 12 C 1.47093 * 110.32676 * 288.74806 * 11 10 9 13 13 C 1.52568 * 114.32330 * 62.79899 * 12 11 10 14 14 H 1.09001 * 109.49541 * 34.98053 * 13 12 11 15 15 N 1.46501 * 109.48753 * 155.02880 * 13 12 11 16 16 C 1.34785 * 119.99714 * 204.99787 * 15 13 12 17 17 O 1.21718 * 120.00087 * 359.97438 * 16 15 13 18 18 C 1.46439 * 119.99901 * 179.97438 * 16 15 13 19 19 S 1.75833 * 125.46110 * 0.03234 * 18 16 15 20 20 C 1.70613 * 91.58465 * 179.97438 * 19 18 16 21 21 C 1.33769 * 110.99827 * 359.97438 * 20 19 18 22 22 C 1.36789 * 125.46317 * 179.71623 * 18 16 15 23 23 Cl 1.73611 * 123.37639 * 0.02562 * 22 18 16 24 24 C 1.50887 * 109.36073 * 274.99155 * 13 12 11 25 25 C 1.47575 * 118.62379 * 26.49652 * 9 7 2 26 26 H 0.97000 * 120.00099 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.44790 * 150.69070 * 10 9 7 28 28 H 1.08998 * 109.44891 * 30.74188 * 10 9 7 29 29 H 1.09003 * 109.32825 * 49.00950 * 11 10 9 30 30 H 1.09002 * 109.33018 * 168.65688 * 11 10 9 31 31 H 1.08991 * 108.51651 * 184.05491 * 12 11 10 32 32 H 1.09000 * 108.50994 * 301.54903 * 12 11 10 33 33 H 0.96991 * 120.00331 * 25.00013 * 15 13 12 34 34 H 1.07998 * 124.49915 * 180.02562 * 20 19 18 35 35 H 1.08003 * 122.45126 * 180.02562 * 21 20 19 36 36 H 1.08999 * 109.36765 * 212.07738 * 24 13 12 37 37 H 1.09004 * 109.36623 * 331.81915 * 24 13 12 38 38 H 1.08999 * 108.95234 * 17.19623 * 25 9 7 39 39 H 1.08999 * 108.89335 * 258.50631 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0599 -1.2195 0.2541 9 7 1.3640 -2.3660 -0.3203 10 6 1.8686 -3.6098 0.2172 11 6 2.9232 -4.2028 -0.7494 12 6 2.2727 -4.7071 -1.9685 13 6 1.5656 -3.6354 -2.7926 14 1 2.1253 -2.7020 -2.7325 15 7 1.4847 -4.0676 -4.1901 16 6 1.3821 -3.1520 -5.1738 17 8 1.3561 -1.9660 -4.9011 18 6 1.3018 -3.5840 -6.5707 19 16 1.3257 -5.2523 -7.1255 20 6 1.1943 -4.7622 -8.7544 21 6 1.1372 -3.4292 -8.8508 22 6 1.1901 -2.7546 -7.6527 23 17 1.1259 -1.0242 -7.5272 24 6 0.1737 -3.4241 -2.2497 25 6 0.1808 -2.2984 -1.1996 26 1 -0.4850 0.8400 -0.0004 27 1 1.0457 -4.3151 0.3336 28 1 2.3288 -3.4254 1.1879 29 1 3.6422 -3.4288 -1.0179 30 1 3.4441 -5.0233 -0.2557 31 1 3.0292 -5.1813 -2.5936 32 1 1.5411 -5.4629 -1.6830 33 1 1.5050 -5.0127 -4.4074 34 1 1.1608 -5.4384 -9.5959 35 1 1.0517 -2.9199 -9.7994 36 1 -0.4954 -3.1526 -3.0662 37 1 -0.1772 -4.3462 -1.7862 38 1 0.1751 -1.3364 -1.7121 39 1 -0.7182 -2.3788 -0.5885 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052396918.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:05 Heat of formation + Delta-G solvation = 17.745276 kcal Electronic energy + Delta-G solvation = -23875.280635 eV Core-core repulsion = 20357.276762 eV Total energy + Delta-G solvation = -3518.003873 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -39.83047 -38.33059 -37.30822 -36.10157 -34.63468 -32.86200 -31.18603 -30.59142 -29.57642 -26.12924 -25.18472 -23.83311 -23.22509 -21.35962 -20.28221 -19.51054 -19.17710 -18.50210 -16.66908 -16.43259 -15.78670 -15.44892 -15.05998 -14.76235 -14.25269 -13.87457 -13.74422 -13.53489 -13.39163 -13.17090 -12.98162 -12.78238 -12.38609 -11.88887 -11.57364 -11.56700 -11.52605 -11.04304 -10.89358 -10.79945 -10.71888 -10.33915 -10.16550 -10.03923 -9.90171 -9.66416 -9.58435 -9.52224 -9.17136 -8.75760 -8.69532 -8.27397 -6.57445 -5.67675 -3.11466 0.17045 0.94934 1.41849 1.99741 2.37383 3.28008 3.30681 3.46953 3.55361 3.56197 4.56720 4.60808 4.80386 4.90831 5.17759 5.31978 5.36781 5.53609 5.59830 5.63264 5.70994 5.77218 6.03332 6.14233 6.23538 6.30712 6.47395 6.52708 6.62222 6.70001 6.81012 6.88955 7.02518 7.09822 7.52186 7.69700 7.81995 7.94215 8.40979 8.58105 9.34440 10.01548 10.45556 11.39852 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.014465 B = 0.004103 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.229233 B = 6823.362328 C = 8231.171754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.008 3.992 3 Si 0.898 3.102 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.292 1.292 7 C -0.259 4.259 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.157 3.843 11 C -0.145 4.145 12 C -0.106 4.106 13 C 0.156 3.844 14 H 0.106 0.894 15 N -0.723 5.723 16 C 0.576 3.424 17 O -0.493 6.493 18 C -0.253 4.253 19 S 0.232 5.768 20 C -0.229 4.229 21 C -0.140 4.140 22 C 0.010 3.990 23 Cl -0.011 7.011 24 C -0.147 4.147 25 C 0.183 3.817 26 H 0.252 0.748 27 H 0.032 0.968 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.387 0.613 34 H 0.176 0.824 35 H 0.153 0.847 36 H 0.056 0.944 37 H 0.046 0.954 38 H 0.079 0.921 39 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.071 -14.629 -17.217 22.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.219 1.219 7 C -0.389 4.389 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.028 3.972 11 C -0.186 4.186 12 C -0.144 4.144 13 C 0.053 3.947 14 H 0.124 0.876 15 N -0.374 5.374 16 C 0.360 3.640 17 O -0.367 6.367 18 C -0.374 4.374 19 S 0.498 5.502 20 C -0.367 4.367 21 C -0.172 4.172 22 C -0.032 4.032 23 Cl 0.018 6.982 24 C -0.187 4.187 25 C 0.057 3.943 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.220 0.780 34 H 0.194 0.806 35 H 0.171 0.829 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 2.012 -14.869 -16.261 22.126 hybrid contribution 0.259 1.825 -1.177 2.187 sum 2.271 -13.044 -17.438 21.895 Atomic orbital electron populations 1.70060 1.05240 1.25259 1.54108 1.24995 0.95214 0.98292 1.00556 0.86297 0.79427 0.84331 0.77167 1.20308 1.21505 1.21872 1.19206 0.92379 0.85019 1.42282 0.91733 1.43678 1.32503 1.01929 1.53159 1.20691 0.93870 0.88406 0.94192 1.21453 1.00392 0.99964 0.96820 1.20573 0.99166 0.97423 0.97285 1.20590 0.97916 0.99446 0.76724 0.87607 1.46206 1.75191 1.08444 1.07537 1.16765 0.78122 0.86489 0.82618 1.90982 1.47655 1.15579 1.82532 1.24785 1.17052 0.97277 0.98323 1.83036 1.66708 1.03377 0.97106 1.25149 1.08972 0.99651 1.02886 1.19781 1.05712 0.93325 0.98381 1.20398 1.02242 0.87989 0.92602 1.98427 1.95957 1.05499 1.98285 1.22459 0.95339 1.00956 0.99978 1.20941 0.88536 0.95674 0.89106 0.93793 0.95001 0.93572 0.91866 0.92992 0.93413 0.92743 0.78013 0.80649 0.82893 0.92530 0.93529 0.90288 0.95650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 11.01 55.49 0.61 -26.35 16 2 C 0.01 0.23 4.87 -17.43 -0.08 0.15 16 3 Si 0.90 22.77 29.58 -169.99 -5.03 17.74 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 7 C -0.26 -7.21 9.44 -15.06 -0.14 -7.35 16 8 H 0.06 1.77 7.88 -52.49 -0.41 1.36 16 9 N -0.59 -14.72 2.27 -172.11 -0.39 -15.11 16 10 C 0.16 3.21 5.66 -4.08 -0.02 3.18 16 11 C -0.15 -2.49 5.74 -28.58 -0.16 -2.65 16 12 C -0.11 -1.64 4.69 -29.79 -0.14 -1.78 16 13 C 0.16 2.81 2.06 -69.21 -0.14 2.66 16 14 H 0.11 2.40 6.92 -51.93 -0.36 2.04 16 15 N -0.72 -10.88 4.93 -56.44 -0.28 -11.16 16 16 C 0.58 9.78 7.60 -12.96 -0.10 9.68 16 17 O -0.49 -10.62 14.75 5.17 0.08 -10.54 16 18 C -0.25 -3.39 6.45 -36.81 -0.24 -3.63 16 19 S 0.23 1.97 22.15 -107.50 -2.38 -0.41 16 20 C -0.23 -1.72 10.92 29.16 0.32 -1.40 16 21 C -0.14 -1.34 10.06 -41.38 -0.42 -1.75 16 22 C 0.01 0.13 6.40 -40.34 -0.26 -0.13 16 23 Cl -0.01 -0.16 27.24 -51.86 -1.41 -1.57 16 24 C -0.15 -2.89 5.39 -27.30 -0.15 -3.03 16 25 C 0.18 4.51 4.67 -2.96 -0.01 4.50 16 26 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 28 H 0.05 0.96 7.99 -51.93 -0.41 0.55 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.64 8.04 -51.93 -0.42 0.22 16 32 H 0.05 0.77 7.36 -51.93 -0.38 0.38 16 33 H 0.39 4.47 7.71 -40.82 -0.31 4.16 16 34 H 0.18 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.15 1.13 8.06 -52.48 -0.42 0.71 16 36 H 0.06 1.13 7.85 -51.93 -0.41 0.72 16 37 H 0.05 0.82 7.32 -51.93 -0.38 0.44 16 38 H 0.08 2.26 6.33 -51.93 -0.33 1.93 16 39 H 0.03 0.67 8.03 -51.93 -0.42 0.26 16 LS Contribution 341.38 15.07 5.14 5.14 Total: -1.00 -32.65 341.38 -10.29 -42.94 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -5.08 Total: 0.87 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -1.55 Total: -1.55 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.06 Total: -52.63 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.08 Total: -10.54 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.03 Total: 17.74 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.38 Total: -0.41 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.41 Total: -1.57 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.65 -10.29 -42.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052396918.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.685 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds