Wall clock time and date at job start Tue Mar 31 2020 15:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99818 * 2 1 4 4 H 1.48497 * 109.46938 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46817 * 299.99537 * 3 2 1 6 6 H 1.48492 * 109.47445 * 59.99640 * 3 2 1 7 7 C 1.38816 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99747 * 195.72884 * 7 2 1 9 9 N 1.36936 * 119.99915 * 15.72318 * 7 2 1 10 10 C 1.44580 * 118.64184 * 206.54048 * 9 7 2 11 11 C 1.54863 * 109.57847 * 270.71385 * 10 9 7 12 12 C 1.47093 * 110.32676 * 288.74806 * 11 10 9 13 13 C 1.52568 * 114.32330 * 62.79899 * 12 11 10 14 14 H 1.09001 * 109.49541 * 34.98053 * 13 12 11 15 15 N 1.46501 * 109.48753 * 155.02880 * 13 12 11 16 16 C 1.34785 * 119.99714 * 204.99787 * 15 13 12 17 17 O 1.21718 * 120.00087 * 359.97438 * 16 15 13 18 18 C 1.46439 * 119.99901 * 179.97438 * 16 15 13 19 19 S 1.75833 * 125.46110 * 0.03234 * 18 16 15 20 20 C 1.70613 * 91.58465 * 179.97438 * 19 18 16 21 21 C 1.33769 * 110.99827 * 359.97438 * 20 19 18 22 22 C 1.36789 * 125.46317 * 179.71623 * 18 16 15 23 23 Cl 1.73611 * 123.37639 * 0.02562 * 22 18 16 24 24 C 1.50887 * 109.36073 * 274.99155 * 13 12 11 25 25 C 1.47575 * 118.62379 * 26.49652 * 9 7 2 26 26 H 0.97000 * 120.00099 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.44790 * 150.69070 * 10 9 7 28 28 H 1.08998 * 109.44891 * 30.74188 * 10 9 7 29 29 H 1.09003 * 109.32825 * 49.00950 * 11 10 9 30 30 H 1.09002 * 109.33018 * 168.65688 * 11 10 9 31 31 H 1.08991 * 108.51651 * 184.05491 * 12 11 10 32 32 H 1.09000 * 108.50994 * 301.54903 * 12 11 10 33 33 H 0.96991 * 120.00331 * 25.00013 * 15 13 12 34 34 H 1.07998 * 124.49915 * 180.02562 * 20 19 18 35 35 H 1.08003 * 122.45126 * 180.02562 * 21 20 19 36 36 H 1.08999 * 109.36765 * 212.07738 * 24 13 12 37 37 H 1.09004 * 109.36623 * 331.81915 * 24 13 12 38 38 H 1.08999 * 108.95234 * 17.19623 * 25 9 7 39 39 H 1.08999 * 108.89335 * 258.50631 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0599 -1.2195 0.2541 9 7 1.3640 -2.3660 -0.3203 10 6 1.8686 -3.6098 0.2172 11 6 2.9232 -4.2028 -0.7494 12 6 2.2727 -4.7071 -1.9685 13 6 1.5656 -3.6354 -2.7926 14 1 2.1253 -2.7020 -2.7325 15 7 1.4847 -4.0676 -4.1901 16 6 1.3821 -3.1520 -5.1738 17 8 1.3561 -1.9660 -4.9011 18 6 1.3018 -3.5840 -6.5707 19 16 1.3257 -5.2523 -7.1255 20 6 1.1943 -4.7622 -8.7544 21 6 1.1372 -3.4292 -8.8508 22 6 1.1901 -2.7546 -7.6527 23 17 1.1259 -1.0242 -7.5272 24 6 0.1737 -3.4241 -2.2497 25 6 0.1808 -2.2984 -1.1996 26 1 -0.4850 0.8400 -0.0004 27 1 1.0457 -4.3151 0.3336 28 1 2.3288 -3.4254 1.1879 29 1 3.6422 -3.4288 -1.0179 30 1 3.4441 -5.0233 -0.2557 31 1 3.0292 -5.1813 -2.5936 32 1 1.5411 -5.4629 -1.6830 33 1 1.5050 -5.0127 -4.4074 34 1 1.1608 -5.4384 -9.5959 35 1 1.0517 -2.9199 -9.7994 36 1 -0.4954 -3.1526 -3.0662 37 1 -0.1772 -4.3462 -1.7862 38 1 0.1751 -1.3364 -1.7121 39 1 -0.7182 -2.3788 -0.5885 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052396918.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:04 Heat of formation + Delta-G solvation = -3.518072 kcal Electronic energy + Delta-G solvation = -23876.202683 eV Core-core repulsion = 20357.276762 eV Total energy + Delta-G solvation = -3518.925921 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.14009 -39.51301 -38.62579 -37.08610 -36.31179 -34.52072 -32.77337 -32.40668 -30.64745 -27.87168 -26.34455 -25.32242 -24.99252 -22.54269 -21.69001 -21.01166 -20.40884 -19.56314 -18.55595 -17.61607 -17.09777 -16.80543 -16.40420 -16.25434 -15.88877 -15.55520 -14.94603 -14.81837 -14.52628 -14.51156 -14.32317 -14.02912 -13.78210 -13.61936 -13.22859 -13.01960 -12.80126 -12.53573 -12.49352 -12.30313 -12.11405 -12.02447 -11.84435 -11.74735 -11.51365 -11.40311 -11.33714 -10.96024 -10.44308 -10.22662 -9.87626 -9.49484 -8.64075 -7.85873 -5.30658 -0.69725 0.12635 0.71841 1.19206 1.38885 1.42529 1.43975 1.51337 2.06481 2.09789 2.49802 3.29160 3.66751 3.72701 3.82390 3.99580 4.08867 4.15715 4.38470 4.46874 4.48812 4.66343 4.69381 4.83912 4.91948 4.95365 4.98614 5.03915 5.16290 5.22751 5.25536 5.35382 5.51399 5.58510 5.62735 5.70748 5.78635 6.41706 6.49740 7.19238 7.20717 7.97668 8.35128 9.19115 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.014465 B = 0.004103 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.229233 B = 6823.362328 C = 8231.171754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.049 4.049 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.301 1.301 6 H -0.286 1.286 7 C -0.258 4.258 8 H 0.065 0.935 9 N -0.604 5.604 10 C 0.147 3.853 11 C -0.132 4.132 12 C -0.104 4.104 13 C 0.165 3.835 14 H 0.052 0.948 15 N -0.707 5.707 16 C 0.572 3.428 17 O -0.555 6.555 18 C -0.305 4.305 19 S 0.313 5.687 20 C -0.201 4.201 21 C -0.159 4.159 22 C 0.002 3.998 23 Cl -0.046 7.046 24 C -0.131 4.131 25 C 0.196 3.804 26 H 0.245 0.755 27 H 0.050 0.950 28 H 0.039 0.961 29 H 0.036 0.964 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.409 0.591 34 H 0.220 0.780 35 H 0.172 0.828 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.027 0.973 39 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.232 -19.115 -19.052 27.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.244 4.244 3 Si 0.782 3.218 4 H -0.190 1.190 5 H -0.229 1.229 6 H -0.213 1.213 7 C -0.389 4.389 8 H 0.083 0.917 9 N -0.326 5.326 10 C 0.021 3.979 11 C -0.172 4.172 12 C -0.142 4.142 13 C 0.061 3.939 14 H 0.070 0.930 15 N -0.359 5.359 16 C 0.358 3.642 17 O -0.434 6.434 18 C -0.427 4.427 19 S 0.579 5.421 20 C -0.339 4.339 21 C -0.189 4.189 22 C -0.042 4.042 23 Cl -0.017 7.017 24 C -0.171 4.171 25 C 0.071 3.929 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.245 0.755 34 H 0.237 0.763 35 H 0.190 0.810 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.045 0.955 39 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges 3.208 -19.449 -18.094 26.757 hybrid contribution -0.094 3.043 -0.672 3.117 sum 3.114 -16.406 -18.765 25.120 Atomic orbital electron populations 1.70209 1.06500 1.25255 1.56117 1.25682 0.95946 1.01194 1.01582 0.85408 0.78963 0.80898 0.76502 1.18966 1.22884 1.21285 1.19510 0.92538 0.86385 1.40484 0.91692 1.43848 1.32261 1.02835 1.53704 1.20965 0.95278 0.86904 0.94733 1.21292 0.98778 1.00269 0.96901 1.20536 1.00450 0.96686 0.96478 1.20225 0.96153 0.98706 0.78822 0.92957 1.45898 1.74557 1.09408 1.06056 1.17309 0.76688 0.85842 0.84323 1.90951 1.50422 1.18186 1.83853 1.24595 1.20650 1.01081 0.96334 1.82706 1.64294 0.98403 0.96695 1.25746 1.04865 0.99338 1.03951 1.19904 1.07097 0.94157 0.97754 1.20811 1.02694 0.86411 0.94238 1.98410 1.96155 1.08725 1.98441 1.22241 0.96736 0.99948 0.98195 1.20565 0.87582 0.95344 0.89442 0.94538 0.93208 0.94284 0.94515 0.88961 0.90140 0.89852 0.75459 0.76293 0.81038 0.93517 0.90403 0.95472 0.98538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.13 11.01 21.65 0.24 -58.89 16 2 C -0.05 -2.93 4.87 84.86 0.41 -2.52 16 3 Si 0.95 48.94 29.58 68.60 2.03 50.97 16 4 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.30 -15.97 7.11 99.48 0.71 -15.27 16 6 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 7 C -0.26 -14.91 9.44 84.03 0.79 -14.12 16 8 H 0.07 3.66 7.88 -2.91 -0.02 3.64 16 9 N -0.60 -30.96 2.27 -698.44 -1.58 -32.55 16 10 C 0.15 5.88 5.66 87.37 0.49 6.37 16 11 C -0.13 -4.16 5.74 29.39 0.17 -4.00 16 12 C -0.10 -2.82 4.69 28.61 0.13 -2.68 16 13 C 0.17 5.87 2.06 44.16 0.09 5.96 16 14 H 0.05 2.48 6.92 -2.39 -0.02 2.46 16 15 N -0.71 -20.43 4.93 -450.69 -2.22 -22.65 16 16 C 0.57 19.74 7.60 86.38 0.66 20.40 16 17 O -0.56 -25.62 14.75 -4.41 -0.06 -25.69 16 18 C -0.31 -7.89 6.45 24.07 0.16 -7.73 16 19 S 0.31 3.99 22.15 -56.49 -1.25 2.74 16 20 C -0.20 -2.03 10.92 66.80 0.73 -1.30 16 21 C -0.16 -2.59 10.06 21.10 0.21 -2.38 16 22 C 0.00 0.05 6.40 21.78 0.14 0.19 16 23 Cl -0.05 -1.47 27.24 -2.72 -0.07 -1.54 16 24 C -0.13 -5.18 5.39 30.23 0.16 -5.02 16 25 C 0.20 10.21 4.67 86.49 0.40 10.61 16 26 H 0.25 15.18 8.31 -92.71 -0.77 14.40 16 27 H 0.05 1.81 8.07 -2.39 -0.02 1.79 16 28 H 0.04 1.59 7.99 -2.39 -0.02 1.57 16 29 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.09 2.23 8.14 -2.39 -0.02 2.22 16 31 H 0.08 1.74 8.04 -2.39 -0.02 1.72 16 32 H 0.08 1.87 7.36 -2.39 -0.02 1.86 16 33 H 0.41 8.08 7.71 -92.71 -0.71 7.36 16 34 H 0.22 0.33 8.06 -2.91 -0.02 0.31 16 35 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 36 H 0.05 1.91 7.85 -2.39 -0.02 1.89 16 37 H 0.08 2.58 7.32 -2.39 -0.02 2.57 16 38 H 0.03 1.67 6.33 -2.39 -0.02 1.65 16 39 H 0.00 -0.19 8.03 -2.39 -0.02 -0.21 16 Total: -1.00 -80.27 341.38 1.99 -78.28 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: 0.36 Total: 5.55 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 4.55 Total: 3.79 kcal Atomic # 7 Polarization: -110.52 SS G_CDS: -3.57 Total: -114.09 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.06 Total: -25.69 kcal Atomic # 14 Polarization: 48.94 SS G_CDS: 2.03 Total: 50.97 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -1.25 Total: 2.74 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.07 Total: -1.54 kcal Total: -80.27 1.99 -78.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052396918.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.758 kcal (2) G-P(sol) polarization free energy of solvation -80.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds